Wall clock time and date at job start Wed Apr 1 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34177 * 127.02596 * 2 1 4 4 O 1.34217 * 109.12869 * 179.97438 * 3 2 1 5 5 C 1.33650 * 110.90467 * 359.97438 * 4 3 2 6 6 C 1.36414 * 108.39933 * 359.75710 * 5 4 3 7 7 C 1.47385 * 127.19506 * 180.26144 * 6 5 4 8 8 O 1.21614 * 120.00161 * 204.08878 * 7 6 5 9 9 N 1.34776 * 119.99491 * 24.09712 * 7 6 5 10 10 C 1.48125 * 127.03085 * 185.28753 * 9 7 6 11 11 C 1.54590 * 103.42465 * 219.28276 * 10 9 7 12 12 H 1.08998 * 110.57380 * 81.16534 * 11 10 9 13 13 C 1.50701 * 110.83490 * 204.44747 * 11 10 9 14 14 C 1.34668 * 125.98903 * 28.27438 * 13 11 10 15 15 N 1.36882 * 106.81643 * 179.85020 * 14 13 11 16 16 C 1.46501 * 126.39467 * 180.12236 * 15 14 13 17 17 C 1.35043 * 107.20135 * 0.41477 * 15 14 13 18 18 N 1.30494 * 108.70084 * 359.73960 * 17 15 14 19 19 C 1.54620 * 102.91090 * 322.86569 * 11 10 9 20 20 H 1.08996 * 110.33060 * 262.80648 * 19 11 10 21 21 N 1.46503 * 110.32768 * 140.59034 * 19 11 10 22 22 C 1.36929 * 120.00187 * 157.92811 * 21 19 11 23 23 H 1.07996 * 119.99916 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00283 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99914 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00337 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46940 * 59.99788 * 26 24 22 28 28 H 1.48501 * 109.47090 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46906 * 299.99722 * 26 24 22 30 30 C 1.47481 * 127.04005 * 5.59569 * 9 7 6 31 31 H 1.09003 * 109.46964 * 90.02243 * 1 2 3 32 32 H 1.08997 * 109.47077 * 210.02842 * 1 2 3 33 33 H 1.09004 * 109.46983 * 330.02368 * 1 2 3 34 34 H 1.08002 * 125.43710 * 359.92656 * 3 2 1 35 35 H 1.08006 * 125.80177 * 180.02562 * 5 4 3 36 36 H 1.09003 * 110.65600 * 337.76882 * 10 9 7 37 37 H 1.09007 * 110.65894 * 100.87940 * 10 9 7 38 38 H 1.08004 * 126.59056 * 359.96797 * 14 13 11 39 39 H 1.08998 * 109.46704 * 270.31725 * 16 15 14 40 40 H 1.08992 * 109.47610 * 30.32156 * 16 15 14 41 41 H 1.09006 * 109.46720 * 150.32665 * 16 15 14 42 42 H 1.08000 * 125.64494 * 179.76253 * 17 15 14 43 43 H 0.97004 * 119.99672 * 337.92438 * 21 19 11 44 44 H 0.96992 * 120.00029 * 180.02562 * 25 24 22 45 45 H 1.08998 * 109.91285 * 273.88312 * 30 9 7 46 46 H 1.09001 * 109.90965 * 35.16188 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6759 0.0015 6 6 2.3923 -1.1738 0.0071 7 6 1.9913 -2.5920 0.0153 8 8 0.8996 -2.9178 -0.4103 9 7 2.8344 -3.5278 0.4948 10 6 2.6400 -4.9962 0.4784 11 6 3.1905 -5.4464 1.8510 12 1 2.4457 -5.2924 2.6317 13 6 3.6288 -6.8876 1.8062 14 6 4.0732 -7.5461 0.7188 15 7 4.3640 -8.8221 1.1200 16 6 4.8818 -9.9019 0.2761 17 6 4.0782 -8.9015 2.4375 18 7 3.6391 -7.7408 2.8410 19 6 4.4041 -4.5114 2.0600 20 1 5.3246 -5.0133 1.7620 21 7 4.4848 -4.0874 3.4601 22 6 5.6759 -3.6513 3.9759 23 1 6.5560 -3.6203 3.3507 24 6 5.7524 -3.2501 5.3025 25 7 4.6799 -3.2884 6.0646 26 14 7.3775 -2.6558 6.0064 27 1 7.8420 -1.4684 5.2451 28 1 7.1941 -2.2888 7.4336 29 1 8.3884 -3.7385 5.9002 30 6 4.1365 -3.2992 1.1486 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8897 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 1.9895 2.1010 -0.0011 35 1 4.5702 -1.2609 0.0025 36 1 1.5820 -5.2430 0.3895 37 1 3.2115 -5.4508 -0.3309 38 1 4.1813 -7.1441 -0.2778 39 1 4.0489 -10.4547 -0.1584 40 1 5.4925 -9.4789 -0.5213 41 1 5.4892 -10.5758 0.8804 42 1 4.1943 -9.7799 3.0549 43 1 3.6943 -4.1156 4.0216 44 1 4.7333 -3.0077 6.9915 45 1 4.9210 -3.2202 0.3960 46 1 4.0974 -2.3877 1.7450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070521927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:47 Heat of formation + Delta-G solvation = 49.797799 kcal Electronic energy + Delta-G solvation = -30270.639357 eV Core-core repulsion = 26163.149017 eV Total energy + Delta-G solvation = -4107.490339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.49971 -42.95416 -40.85056 -38.77611 -35.79636 -35.04672 -34.77960 -33.46399 -32.48573 -31.29750 -29.45102 -28.84991 -28.12893 -27.54534 -26.21589 -25.03241 -23.34636 -22.22539 -22.02539 -21.40609 -20.70542 -20.27360 -19.07566 -18.49830 -17.99029 -17.45232 -17.07446 -16.82109 -16.54529 -16.37778 -16.26088 -15.57116 -15.36157 -15.20882 -14.95942 -14.83273 -14.64114 -14.32753 -14.04298 -13.97117 -13.77020 -13.54302 -13.41021 -13.33153 -13.25204 -13.19441 -12.81549 -12.55693 -12.48158 -12.45364 -12.16306 -11.85044 -11.69109 -11.18211 -10.95669 -10.72766 -10.52996 -10.36772 -9.77607 -9.58993 -9.28653 -8.89289 -7.88474 -5.18163 0.40992 1.09515 1.19982 1.48872 1.52191 1.57870 1.76901 2.07092 2.11726 2.23702 2.28163 2.59437 3.40870 3.43451 3.57922 3.66001 3.81903 3.83232 4.01002 4.06261 4.09698 4.13825 4.31788 4.32842 4.39068 4.44582 4.51054 4.53785 4.63041 4.71976 4.79156 4.79831 4.80586 4.86575 4.91258 5.01949 5.05348 5.11938 5.16739 5.39023 5.43068 5.50390 5.56615 5.87181 6.02367 6.29976 6.42287 6.48109 7.08097 7.31927 7.36689 8.10023 8.34470 9.35074 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.006935 B = 0.004523 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4036.313278 B = 6189.278001 C = 9368.745419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.168 4.168 3 C -0.032 4.032 4 O -0.176 6.176 5 C 0.035 3.965 6 C -0.262 4.262 7 C 0.601 3.399 8 O -0.579 6.579 9 N -0.610 5.610 10 C 0.128 3.872 11 C -0.016 4.016 12 H 0.052 0.948 13 C -0.005 4.005 14 C -0.044 4.044 15 N -0.460 5.460 16 C 0.068 3.932 17 C 0.174 3.826 18 N -0.539 5.539 19 C 0.182 3.818 20 H 0.070 0.930 21 N -0.722 5.722 22 C -0.235 4.235 23 H 0.084 0.916 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.970 3.030 27 H -0.272 1.272 28 H -0.302 1.302 29 H -0.280 1.280 30 C 0.077 3.923 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.232 0.768 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.205 0.795 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.231 0.769 43 H 0.368 0.632 44 H 0.248 0.752 45 H 0.097 0.903 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -4.656 -19.179 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.169 4.169 3 C -0.098 4.098 4 O -0.070 6.070 5 C -0.035 4.035 6 C -0.266 4.266 7 C 0.393 3.607 8 O -0.461 6.461 9 N -0.342 5.342 10 C 0.005 3.995 11 C -0.037 4.037 12 H 0.070 0.930 13 C -0.134 4.134 14 C -0.178 4.178 15 N -0.142 5.142 16 C -0.073 4.073 17 C -0.109 4.109 18 N -0.257 5.257 19 C 0.071 3.929 20 H 0.088 0.912 21 N -0.360 5.360 22 C -0.366 4.366 23 H 0.102 0.898 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.799 3.201 27 H -0.198 1.198 28 H -0.229 1.229 29 H -0.206 1.206 30 C -0.048 4.048 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.264 0.736 35 H 0.248 0.752 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.221 0.779 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.247 0.753 43 H 0.200 0.800 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.102 -4.478 -18.715 19.243 hybrid contribution 0.339 -0.193 0.727 0.825 sum 0.441 -4.671 -17.988 18.590 Atomic orbital electron populations 1.20122 0.87966 1.02516 1.02656 1.21697 0.97968 0.90721 1.06550 1.24396 0.78806 1.00753 1.05803 1.83816 1.30273 1.22217 1.70702 1.25018 0.99065 0.81070 0.98362 1.21418 0.94976 0.93558 1.16659 1.17156 0.82699 0.84106 0.76731 1.90706 1.22308 1.82510 1.50530 1.48604 1.20872 1.06884 1.57864 1.22379 1.01870 0.78945 0.96299 1.20449 0.96971 0.89361 0.96948 0.92958 1.20148 1.07682 0.95190 0.90428 1.22701 1.08630 0.85386 1.01063 1.45650 1.47874 1.10904 1.09777 1.22368 1.01049 0.88334 0.95503 1.25488 1.02865 0.98723 0.83796 1.70111 1.21211 1.02072 1.32340 1.21250 0.96104 0.91062 0.84499 0.91198 1.42594 1.09285 1.77031 1.07125 1.19596 0.89298 1.33553 0.94177 0.89803 1.25551 1.00159 1.03686 0.97295 1.69854 1.29699 1.55732 1.06913 0.85268 0.79631 0.78451 0.76746 1.19762 1.22902 1.20614 1.23412 0.83784 1.01473 0.96118 0.90601 0.93750 0.89105 0.73616 0.75182 0.90812 0.87379 0.77866 0.89116 0.88113 0.87798 0.75304 0.80021 0.94335 0.88472 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.97 71.24 0.71 -1.21 16 2 C -0.17 -4.71 6.37 -18.49 -0.12 -4.83 16 3 C -0.03 -0.72 11.96 66.89 0.80 0.08 16 4 O -0.18 -4.41 10.52 4.47 0.05 -4.37 16 5 C 0.04 0.94 10.37 67.39 0.70 1.64 16 6 C -0.26 -8.36 5.99 -18.99 -0.11 -8.47 16 7 C 0.60 21.70 7.84 86.65 0.68 22.38 16 8 O -0.58 -23.88 16.26 -4.07 -0.07 -23.94 16 9 N -0.61 -19.96 3.29 -813.97 -2.68 -22.65 16 10 C 0.13 3.81 6.38 86.61 0.55 4.37 16 11 C -0.02 -0.58 3.28 -10.45 -0.03 -0.61 16 12 H 0.05 2.31 7.74 -2.39 -0.02 2.29 16 13 C -0.01 -0.18 6.04 41.39 0.25 0.07 16 14 C -0.04 -1.05 10.68 83.09 0.89 -0.16 16 15 N -0.46 -9.29 3.15 -552.53 -1.74 -11.03 16 16 C 0.07 0.57 11.18 127.77 1.43 2.00 16 17 C 0.17 4.60 12.56 180.26 2.26 6.86 16 18 N -0.54 -20.26 11.25 -188.33 -2.12 -22.38 16 19 C 0.18 6.97 3.21 45.88 0.15 7.11 16 20 H 0.07 2.63 7.81 -2.39 -0.02 2.61 16 21 N -0.72 -36.59 5.07 -318.73 -1.62 -38.20 16 22 C -0.23 -12.72 9.97 84.03 0.84 -11.88 16 23 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 25 N -0.97 -61.20 13.06 21.65 0.28 -60.91 16 26 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 29 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 30 C 0.08 2.50 5.08 86.53 0.44 2.94 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.38 7.58 -2.39 -0.02 1.36 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.23 4.93 6.05 -2.91 -0.02 4.91 16 36 H 0.07 2.37 7.81 -2.39 -0.02 2.35 16 37 H 0.11 2.40 6.39 -2.38 -0.02 2.39 16 38 H 0.20 3.27 6.91 -2.91 -0.02 3.25 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 41 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.23 4.18 8.06 -2.91 -0.02 4.16 16 43 H 0.37 21.29 7.54 -92.71 -0.70 20.59 16 44 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.10 2.36 7.48 -2.39 -0.02 2.35 16 46 H 0.07 2.55 6.68 -2.39 -0.02 2.53 16 Total: -1.00 -85.51 384.84 4.35 -81.15 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.32 Total: 37.79 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 9.90 Total: 16.44 kcal Atomic # 7 Polarization: -147.30 SS G_CDS: -7.88 Total: -155.17 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.02 Total: -28.31 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -85.51 4.35 -81.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070521927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.950 kcal (2) G-P(sol) polarization free energy of solvation -85.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds