Wall clock time and date at job start Wed Apr 1 2020 04:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47262 * 2 1 4 4 C 1.53010 * 109.47209 * 240.00394 * 2 1 3 5 5 C 1.50701 * 109.47374 * 120.00440 * 2 1 3 6 6 O 1.21281 * 119.99744 * 355.82478 * 5 2 1 7 7 N 1.34775 * 120.00117 * 175.82009 * 5 2 1 8 8 C 1.47026 * 125.64996 * 354.38629 * 7 5 2 9 9 C 1.54322 * 107.39989 * 181.09618 * 8 7 5 10 10 H 1.09008 * 110.71692 * 140.47370 * 9 8 7 11 11 O 1.42891 * 110.72039 * 263.56997 * 9 8 7 12 12 C 1.55152 * 102.94274 * 22.11599 * 9 8 7 13 13 H 1.08995 * 111.01017 * 82.61078 * 12 9 8 14 14 C 1.53002 * 111.00426 * 206.42037 * 12 9 8 15 15 N 1.46497 * 109.47482 * 184.99483 * 14 12 9 16 16 C 1.34776 * 119.99946 * 179.97438 * 15 14 12 17 17 O 1.21279 * 120.00352 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99688 * 180.02562 * 16 15 14 19 19 S 1.81008 * 109.46908 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99839 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99983 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99878 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99891 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47281 * 89.99829 * 24 22 20 26 26 H 1.48505 * 109.46946 * 210.00005 * 24 22 20 27 27 H 1.48509 * 109.47118 * 329.99754 * 24 22 20 28 28 C 1.47740 * 125.82102 * 174.28312 * 7 5 2 29 29 H 1.09001 * 109.47482 * 299.99917 * 1 2 3 30 30 H 1.09008 * 109.47409 * 59.99658 * 1 2 3 31 31 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47206 * 185.83765 * 3 2 1 33 33 H 1.08995 * 109.47054 * 305.84131 * 3 2 1 34 34 H 1.08997 * 109.47051 * 65.84046 * 3 2 1 35 35 H 1.08994 * 109.46974 * 283.85117 * 4 2 1 36 36 H 1.08997 * 109.46782 * 43.84854 * 4 2 1 37 37 H 1.08999 * 109.47454 * 163.85074 * 4 2 1 38 38 H 1.09001 * 109.88260 * 61.59954 * 8 7 5 39 39 H 1.09003 * 109.87629 * 300.59089 * 8 7 5 40 40 H 0.96699 * 114.00215 * 298.54390 * 11 9 8 41 41 H 1.09000 * 109.47099 * 304.99941 * 14 12 9 42 42 H 1.09004 * 109.46711 * 64.99566 * 14 12 9 43 43 H 0.97001 * 120.00032 * 0.02562 * 15 14 12 44 44 H 1.09000 * 109.47403 * 300.00475 * 18 16 15 45 45 H 1.09003 * 109.46976 * 60.01088 * 18 16 15 46 46 H 0.96997 * 119.99909 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.28981 * 37.03097 * 28 7 5 48 48 H 1.09004 * 110.53050 * 274.76045 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2304 6 8 1.2468 -1.1048 2.0661 7 7 3.3544 -0.9078 1.4020 8 6 4.4028 -0.5889 0.4217 9 6 5.7539 -1.0090 1.0378 10 1 6.3989 -1.4586 0.2827 11 8 6.3993 0.1088 1.6508 12 6 5.3391 -2.0596 2.1015 13 1 5.1957 -3.0399 1.6472 14 6 6.3656 -2.1282 3.2340 15 7 6.0055 -3.2091 4.1548 16 6 6.7722 -3.4576 5.2350 17 8 7.7600 -2.7861 5.4451 18 6 6.4020 -4.5701 6.1820 19 16 7.6163 -4.6510 7.5218 20 6 6.9583 -5.9963 8.4502 21 1 6.0581 -6.4923 8.1184 22 6 7.5969 -6.4186 9.6080 23 7 8.6937 -5.8138 10.0126 24 14 6.8997 -7.8452 10.5918 25 1 7.4857 -9.1183 10.1009 26 1 7.2349 -7.6671 12.0275 27 1 5.4241 -7.8844 10.4292 28 6 3.9946 -1.4781 2.6052 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1249 1.4443 -0.1045 33 1 1.5938 1.9856 -0.8330 34 1 1.7645 1.9253 0.9376 35 1 1.9291 -1.7975 -1.1182 36 1 1.4623 -0.3994 -2.1159 37 1 3.0917 -0.4804 -1.4040 38 1 4.4055 0.4817 0.2170 39 1 4.2280 -1.1421 -0.5010 40 1 6.6100 0.8263 1.0377 41 1 7.3543 -2.3202 2.8171 42 1 6.3762 -1.1805 3.7725 43 1 5.2156 -3.7465 3.9867 44 1 5.4134 -4.3782 6.5991 45 1 6.3914 -5.5175 5.6430 46 1 9.1397 -6.1087 10.8219 47 1 3.3729 -2.2687 3.0253 48 1 4.1722 -0.7008 3.3485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081287534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:45 Heat of formation + Delta-G solvation = -121.514965 kcal Electronic energy + Delta-G solvation = -27997.572238 eV Core-core repulsion = 23985.804420 eV Total energy + Delta-G solvation = -4011.767818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10110 -39.37183 -38.58752 -36.16823 -35.76685 -34.71201 -32.40210 -31.70729 -29.57309 -28.99573 -27.95107 -27.57113 -26.14569 -25.42593 -23.84557 -22.05160 -20.80618 -20.31537 -19.40878 -18.16902 -17.74776 -17.05384 -16.23079 -16.08783 -15.99989 -15.69719 -15.47176 -15.23050 -14.77855 -14.59768 -14.48848 -14.29403 -14.10905 -13.80121 -13.32579 -13.24045 -13.03313 -12.91939 -12.79457 -12.61785 -12.54783 -12.27509 -12.14575 -11.94944 -11.69310 -11.57967 -11.48567 -11.44890 -11.07286 -11.03835 -10.99570 -10.73288 -10.62515 -9.96793 -9.78758 -9.36525 -9.04398 -9.04288 -8.85093 -8.20403 -6.46822 -6.18962 -3.89197 2.26674 2.50153 3.04192 3.14512 3.24541 3.29638 3.33796 3.53765 3.69618 3.85558 3.91773 4.12719 4.23182 4.28508 4.33705 4.41247 4.61091 4.71649 4.79055 4.84135 4.97294 5.00714 5.07490 5.10412 5.16129 5.22095 5.23336 5.32388 5.36612 5.39024 5.47237 5.53370 5.57611 5.64109 5.69495 5.75927 5.78237 5.89649 5.93372 6.03431 6.17952 6.62714 7.08529 7.14023 7.62409 7.72401 7.79187 8.38097 8.65162 9.26372 10.88465 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.001944 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.583830 B =14396.138353 C =15413.383888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.151 4.151 5 C 0.538 3.462 6 O -0.534 6.534 7 N -0.614 5.614 8 C 0.059 3.941 9 C 0.100 3.900 10 H 0.085 0.915 11 O -0.548 6.548 12 C -0.106 4.106 13 H 0.103 0.897 14 C 0.142 3.858 15 N -0.743 5.743 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.111 3.889 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.381 0.619 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.397 0.603 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.082 0.918 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 13.578 -29.071 34.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.201 4.201 4 C -0.208 4.208 5 C 0.326 3.674 6 O -0.409 6.409 7 N -0.349 5.349 8 C -0.065 4.065 9 C 0.040 3.960 10 H 0.102 0.898 11 O -0.354 6.354 12 C -0.125 4.125 13 H 0.121 0.879 14 C 0.018 3.982 15 N -0.398 5.398 16 C 0.318 3.682 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.011 4.011 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.229 0.771 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.101 0.899 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.254 14.160 -27.599 32.998 hybrid contribution -1.903 -1.609 -0.274 2.508 sum -13.157 12.551 -27.874 33.281 Atomic orbital electron populations 1.21679 0.91667 1.02938 1.02241 1.20776 0.98091 0.96418 0.93336 1.21963 1.01469 0.93663 1.03045 1.22136 1.01891 1.00592 0.96225 1.20335 0.80218 0.78938 0.87871 1.90730 1.54253 1.50528 1.45433 1.48410 1.05295 1.63385 1.17827 1.23326 0.88242 1.01712 0.93187 1.22756 0.91241 0.87655 0.94395 0.89759 1.86615 1.80073 1.29313 1.39408 1.22729 0.95003 0.98412 0.96381 0.87857 1.20972 0.96677 0.91539 0.89025 1.46056 1.30428 1.36610 1.26656 1.20282 0.82659 0.84595 0.80631 1.90708 1.26112 1.49119 1.73048 1.23539 1.06489 0.98815 1.01598 1.85391 1.31780 1.44921 1.21289 1.22873 1.14398 1.18954 1.12081 0.90933 1.24994 0.94787 0.97302 0.96557 1.70019 1.17109 1.39874 1.23297 0.86167 0.79212 0.81289 0.78823 1.20293 1.20765 1.19696 1.22423 0.92223 0.98680 0.87788 0.91745 0.91888 0.91931 0.91745 0.91181 0.92000 0.92086 0.91230 0.91234 0.90127 0.89625 0.77068 0.91003 0.90303 0.76974 0.89203 0.89249 0.92210 0.89942 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 7.71 37.15 0.29 -0.61 16 2 C -0.08 -0.55 0.75 -155.66 -0.12 -0.67 16 3 C -0.14 -0.72 8.27 37.16 0.31 -0.41 16 4 C -0.15 -0.66 7.68 37.16 0.29 -0.37 16 5 C 0.54 5.45 6.51 -10.99 -0.07 5.38 16 6 O -0.53 -7.74 16.23 5.56 0.09 -7.65 16 7 N -0.61 -5.11 3.33 -170.26 -0.57 -5.68 16 8 C 0.06 0.27 4.86 -3.06 -0.01 0.26 16 9 C 0.10 0.54 4.08 -24.90 -0.10 0.44 16 10 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 11 O -0.55 -3.59 12.27 -35.23 -0.43 -4.02 16 12 C -0.11 -0.82 2.98 -88.47 -0.26 -1.08 16 13 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 14 C 0.14 1.64 4.61 -4.04 -0.02 1.62 16 15 N -0.74 -9.91 5.50 -60.29 -0.33 -10.24 16 16 C 0.53 10.08 7.85 -10.98 -0.09 10.00 16 17 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 18 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 21 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 24 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.11 1.05 6.37 -2.35 -0.01 1.04 16 29 H 0.06 0.53 8.05 -51.93 -0.42 0.12 16 30 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.25 5.13 -51.93 -0.27 -0.02 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.32 8.03 -51.93 -0.42 -0.09 16 36 H 0.07 0.23 8.04 -51.93 -0.42 -0.19 16 37 H 0.07 0.20 4.99 -51.93 -0.26 -0.06 16 38 H 0.08 0.27 5.51 -51.93 -0.29 -0.02 16 39 H 0.09 0.27 5.70 -51.93 -0.30 -0.03 16 40 H 0.38 0.78 9.09 45.56 0.41 1.19 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.08 7.56 -51.93 -0.39 0.68 16 43 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 48 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -38.91 396.51 -7.93 -46.83 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.86 Total: 0.04 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.61 Total: -0.49 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.16 Total: -41.64 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.25 Total: -23.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.91 -7.93 -46.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081287534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.685 kcal (2) G-P(sol) polarization free energy of solvation -38.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds