Wall clock time and date at job start Wed Apr 1 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46999 * 2 1 4 4 N 1.30003 * 127.40127 * 270.00245 * 3 2 1 5 5 O 1.20859 * 113.52947 * 180.02562 * 4 3 2 6 6 C 1.34442 * 113.06951 * 359.97438 * 5 4 3 7 7 N 1.32341 * 134.98486 * 179.97438 * 6 5 4 8 8 C 1.31471 * 121.78081 * 180.02562 * 7 6 5 9 9 C 1.40017 * 121.51825 * 359.97438 * 8 7 6 10 10 C 1.47706 * 120.49980 * 179.97438 * 9 8 7 11 11 O 1.21575 * 120.00406 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00038 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99899 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46729 * 179.97438 * 13 12 10 15 15 H 1.08993 * 112.85415 * 316.19605 * 14 13 12 16 16 C 1.53955 * 113.66265 * 87.44496 * 14 13 12 17 17 C 1.53791 * 87.01917 * 139.93147 * 16 14 13 18 18 H 1.08996 * 113.61486 * 89.23214 * 17 16 14 19 19 N 1.46505 * 113.61264 * 220.04706 * 17 16 14 20 20 C 1.36931 * 119.99788 * 254.13455 * 19 17 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 17 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 C 1.53780 * 87.17106 * 334.63326 * 17 16 14 29 29 C 1.39903 * 118.99826 * 0.25400 * 9 8 7 30 30 C 1.38657 * 117.70985 * 359.50728 * 29 9 8 31 31 H 1.09005 * 109.47196 * 59.99797 * 1 2 3 32 32 H 1.09000 * 109.47014 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46930 * 299.99886 * 1 2 3 34 34 H 1.09005 * 109.47255 * 240.00454 * 2 1 3 35 35 H 1.08991 * 109.47314 * 120.00107 * 2 1 3 36 36 H 1.07999 * 119.23978 * 180.02562 * 8 7 6 37 37 H 0.96999 * 119.99886 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.47112 * 60.00415 * 13 12 10 39 39 H 1.08998 * 109.47513 * 300.00125 * 13 12 10 40 40 H 1.09000 * 113.61729 * 25.41379 * 16 14 13 41 41 H 1.08997 * 113.66555 * 254.45486 * 16 14 13 42 42 H 0.97000 * 119.99792 * 74.13250 * 19 17 16 43 43 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 44 44 H 1.08999 * 113.60991 * 139.93475 * 28 17 16 45 45 H 1.08995 * 113.62121 * 270.84227 * 28 17 16 46 46 H 1.08006 * 121.14498 * 179.74618 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2955 2.1653 -1.0327 5 8 2.6871 3.2714 -0.7430 6 6 2.7586 3.4740 0.5842 7 7 3.1172 4.4859 1.3581 8 6 3.0868 4.3993 2.6696 9 6 2.6717 3.2289 3.3163 10 6 2.6468 3.1560 4.7914 11 8 2.2852 2.1351 5.3436 12 7 3.0249 4.2214 5.5252 13 6 2.9996 4.1493 6.9883 14 6 3.4731 5.4817 7.5727 15 1 4.3518 5.8785 7.0643 16 6 2.3449 6.5140 7.7509 17 6 3.0104 6.8916 9.0850 18 1 3.7620 7.6754 8.9915 19 7 2.0550 7.1458 10.1661 20 6 1.8157 8.4286 10.5809 21 1 2.3310 9.2532 10.1107 22 6 0.9062 8.6699 11.6014 23 7 0.2778 7.6651 12.1740 24 14 0.5740 10.4206 12.1620 25 1 -0.5436 10.9910 11.3678 26 1 0.2079 10.4185 13.6011 27 1 1.7937 11.2439 11.9627 28 6 3.6002 5.4716 9.1053 29 6 2.2866 2.1275 2.5444 30 6 2.3279 2.2609 1.1649 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.3881 5.2508 3.2616 37 1 3.3137 5.0359 5.0847 38 1 3.6606 3.3503 7.3241 39 1 1.9831 3.9454 7.3245 40 1 1.3578 6.0664 7.8668 41 1 2.3637 7.3146 7.0116 42 1 1.5919 6.4052 10.5881 43 1 -0.3575 7.8337 12.8874 44 1 4.6309 5.4320 9.4576 45 1 2.9570 4.7385 9.5920 46 1 1.9644 1.2063 3.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086279667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:36 Heat of formation + Delta-G solvation = 83.389892 kcal Electronic energy + Delta-G solvation = -28224.766825 eV Core-core repulsion = 24118.733148 eV Total energy + Delta-G solvation = -4106.033677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.26646 -40.81907 -39.33528 -38.41604 -36.13317 -34.95977 -33.42110 -33.14142 -31.99179 -31.58711 -30.28809 -27.87564 -25.94288 -25.15858 -24.88161 -24.52824 -23.82703 -21.73552 -21.22599 -21.18562 -19.35667 -18.76455 -18.51669 -18.30038 -17.42662 -17.08110 -16.50125 -15.92420 -15.62650 -15.05914 -14.97610 -14.76530 -14.62079 -14.27917 -14.10068 -13.94964 -13.83572 -13.58864 -13.42071 -13.28281 -12.98560 -12.36651 -12.23858 -11.99234 -11.88605 -11.65009 -11.49801 -11.44001 -11.29018 -10.87186 -10.72804 -10.51846 -10.24558 -10.15902 -9.98452 -9.91351 -9.87552 -9.73358 -9.55332 -9.21080 -8.90103 -6.99663 -5.81192 -3.10155 -0.06145 -0.03809 1.51167 1.70273 2.32071 2.74333 3.14944 3.22513 3.40874 3.45555 3.46185 3.47844 3.76750 4.00614 4.12921 4.29191 4.36272 4.55608 4.61585 4.64775 4.69094 4.87312 4.89452 5.04783 5.14503 5.24245 5.25491 5.27653 5.39779 5.41628 5.43579 5.53612 5.62870 5.72493 5.76091 5.86328 6.04784 6.08983 6.23619 6.29067 6.34722 6.53816 6.76195 6.84029 7.06169 7.17293 7.62742 7.66458 7.84829 8.37315 9.48529 10.06465 10.40433 11.41094 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.001670 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.234844 B =16763.305261 C =16983.383523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.075 3.925 4 N -0.314 5.314 5 O 0.086 5.914 6 C 0.230 3.770 7 N -0.460 5.460 8 C 0.196 3.804 9 C -0.201 4.201 10 C 0.565 3.435 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.132 3.868 14 C -0.129 4.129 15 H 0.090 0.910 16 C -0.162 4.162 17 C 0.165 3.835 18 H 0.075 0.925 19 N -0.713 5.713 20 C -0.245 4.245 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.141 4.141 29 C 0.066 3.934 30 C -0.225 4.225 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.181 0.819 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.247 -14.910 -24.700 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.095 4.095 4 N -0.020 5.020 5 O 0.029 5.971 6 C 0.049 3.951 7 N -0.176 5.176 8 C 0.030 3.970 9 C -0.207 4.207 10 C 0.351 3.649 11 O -0.409 6.409 12 N -0.366 5.366 13 C 0.009 3.991 14 C -0.148 4.148 15 H 0.108 0.892 16 C -0.203 4.203 17 C 0.053 3.947 18 H 0.093 0.907 19 N -0.351 5.351 20 C -0.376 4.376 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.181 4.181 29 C 0.038 3.962 30 C -0.231 4.231 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.198 0.802 37 H 0.235 0.765 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.199 -14.788 -26.000 30.547 hybrid contribution -0.518 0.475 1.297 1.475 sum 5.681 -14.313 -24.703 29.110 Atomic orbital electron populations 1.21764 0.93118 1.03049 1.02854 1.20092 0.96967 0.86684 1.04811 1.24363 0.99990 0.98592 0.86533 1.73512 1.13653 0.91739 1.23086 1.84929 1.66808 1.26055 1.19324 1.21783 0.95819 0.91133 0.86412 1.66424 1.17937 1.28313 1.04925 1.23136 0.89867 0.96257 0.87770 1.21005 1.08022 0.96323 0.95306 1.17700 0.77953 0.83903 0.85391 1.90822 1.47228 1.30327 1.72530 1.45964 1.66977 1.15471 1.08232 1.21544 1.02258 0.98189 0.77101 1.22697 1.00021 0.94590 0.97498 0.89210 1.24002 0.97614 0.97306 1.01380 1.21522 0.91877 0.93295 0.87999 0.90707 1.42408 1.47358 1.06290 1.39020 1.19297 1.19373 0.84994 1.13951 0.91080 1.24773 0.99618 0.97359 0.99158 1.69658 1.30924 1.29397 1.27985 0.86192 0.77999 0.84221 0.77772 1.21705 1.21757 1.20724 1.23427 1.01166 1.00560 0.92924 1.20955 0.87479 0.98470 0.89314 1.20879 1.09995 0.96579 0.95640 0.92121 0.90903 0.91982 0.89033 0.88722 0.80207 0.76481 0.91283 0.90738 0.90278 0.92659 0.78065 0.93438 0.91904 0.90039 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.05 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.08 0.61 6.84 -79.98 -0.55 0.07 16 4 N -0.31 -3.13 11.94 34.92 0.42 -2.71 16 5 O 0.09 0.92 11.11 16.11 0.18 1.10 16 6 C 0.23 2.38 8.75 -16.20 -0.14 2.24 16 7 N -0.46 -4.54 10.36 -12.61 -0.13 -4.67 16 8 C 0.20 1.50 10.68 -17.04 -0.18 1.32 16 9 C -0.20 -1.74 5.90 -104.74 -0.62 -2.36 16 10 C 0.57 5.99 7.78 -12.39 -0.10 5.89 16 11 O -0.53 -7.51 16.42 5.30 0.09 -7.42 16 12 N -0.72 -6.54 5.51 -61.29 -0.34 -6.88 16 13 C 0.13 1.47 5.51 -4.04 -0.02 1.45 16 14 C -0.13 -1.50 3.75 -89.71 -0.34 -1.83 16 15 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.16 -2.44 7.45 -25.82 -0.19 -2.64 16 17 C 0.17 3.01 4.47 -67.11 -0.30 2.71 16 18 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 19 N -0.71 -17.20 5.41 -52.63 -0.28 -17.48 16 20 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.14 -2.06 7.39 -25.91 -0.19 -2.25 16 29 C 0.07 0.55 9.75 -38.80 -0.38 0.18 16 30 C -0.23 -2.02 6.55 -105.22 -0.69 -2.71 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.18 0.78 6.39 -52.49 -0.34 0.44 16 37 H 0.40 2.53 6.52 -40.82 -0.27 2.27 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 40 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.39 9.93 7.91 -40.82 -0.32 9.61 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 46 H 0.16 1.15 7.74 -52.48 -0.41 0.75 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -33.25 391.33 -8.57 -41.82 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.34 Total: 6.29 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.76 Total: -5.92 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.39 Total: -58.74 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.27 Total: -6.33 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.25 -8.57 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086279667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.207 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds