Wall clock time and date at job start Wed Apr 1 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47134 * 2 1 4 4 N 1.30001 * 127.40233 * 269.99630 * 3 2 1 5 5 O 1.20849 * 113.53482 * 180.02562 * 4 3 2 6 6 C 1.34446 * 113.07135 * 359.97438 * 5 4 3 7 7 N 1.32334 * 134.98914 * 179.97438 * 6 5 4 8 8 C 1.31471 * 121.77903 * 179.75193 * 7 6 5 9 9 C 1.40017 * 121.52200 * 0.56894 * 8 7 6 10 10 C 1.47705 * 120.50535 * 179.70352 * 9 8 7 11 11 O 1.21566 * 120.00415 * 179.73099 * 10 9 8 12 12 N 1.34780 * 119.99707 * 359.72969 * 10 9 8 13 13 C 1.46502 * 119.99751 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46813 * 179.97438 * 13 12 10 15 15 C 1.53781 * 113.61327 * 174.99822 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.98497 * 15 14 13 17 17 N 1.46506 * 113.61361 * 89.11956 * 16 15 14 18 18 C 1.36932 * 119.99948 * 156.53166 * 17 16 15 19 19 H 1.08003 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99870 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46920 * 60.00171 * 22 20 18 24 24 H 1.48504 * 109.47206 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47429 * 300.00144 * 22 20 18 26 26 C 1.53773 * 87.17302 * 334.52628 * 16 15 14 27 27 C 1.39907 * 118.99560 * 359.43685 * 9 8 7 28 28 C 1.38658 * 117.70848 * 0.27041 * 27 9 8 29 29 H 1.08998 * 109.47535 * 60.00160 * 1 2 3 30 30 H 1.09003 * 109.47421 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47435 * 300.00176 * 1 2 3 32 32 H 1.08994 * 109.47154 * 239.99643 * 2 1 3 33 33 H 1.09007 * 109.47000 * 120.00112 * 2 1 3 34 34 H 1.07997 * 119.24056 * 180.30209 * 8 7 6 35 35 H 0.97002 * 120.00271 * 359.97438 * 12 10 9 36 36 H 1.09005 * 109.47329 * 60.00307 * 13 12 10 37 37 H 1.08995 * 109.47088 * 299.99471 * 13 12 10 38 38 H 1.09005 * 112.84988 * 43.80903 * 14 13 12 39 39 H 1.09001 * 113.61537 * 25.43951 * 15 14 13 40 40 H 1.08998 * 113.61680 * 254.53105 * 15 14 13 41 41 H 1.09002 * 113.61408 * 219.93560 * 16 15 14 42 42 H 0.96997 * 119.99707 * 336.52824 * 17 16 15 43 43 H 0.97000 * 119.99576 * 179.97438 * 21 20 18 44 44 H 1.09007 * 113.61678 * 140.01927 * 26 16 15 45 45 H 1.09000 * 113.61916 * 270.92600 * 26 16 15 46 46 H 1.08000 * 121.14471 * 180.29002 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2955 2.1653 -1.0327 5 8 2.6871 3.2713 -0.7431 6 6 2.7586 3.4741 0.5841 7 7 3.1171 4.4859 1.3579 8 6 3.0815 4.4011 2.6694 9 6 2.6724 3.2287 3.3163 10 6 2.6471 3.1559 4.7913 11 8 2.2857 2.1350 5.3436 12 7 3.0249 4.2215 5.5251 13 6 2.9993 4.1496 6.9881 14 6 3.4724 5.4821 7.5726 15 6 3.3677 5.5544 9.1051 16 6 4.7210 6.2844 9.0845 17 7 4.6013 7.7390 8.9570 18 6 5.6145 8.5502 9.3933 19 1 6.5018 8.1178 9.8318 20 6 5.5013 9.9284 9.2720 21 7 4.4198 10.4554 8.7381 22 14 6.8832 11.0351 9.8678 23 1 8.1301 10.7112 9.1292 24 1 6.5194 12.4546 9.6272 25 1 7.0986 10.8194 11.3212 26 6 4.9999 5.5701 7.7517 27 6 2.2825 2.1289 2.5444 28 6 2.3288 2.2606 1.1648 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.3787 5.2540 3.2615 35 1 3.3137 5.0360 5.0845 36 1 3.6604 3.3507 7.3243 37 1 1.9827 3.9456 7.3241 38 1 3.0406 6.3443 7.0643 39 1 3.4047 4.5798 9.5918 40 1 2.5429 6.1737 9.4577 41 1 5.3915 5.9839 9.8896 42 1 3.8043 8.1274 8.5635 43 1 4.3406 11.4185 8.6537 44 1 5.4919 6.2020 7.0121 45 1 5.4824 4.5997 7.8688 46 1 1.9564 1.2091 3.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091379951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:40 Heat of formation + Delta-G solvation = 84.550992 kcal Electronic energy + Delta-G solvation = -28411.824955 eV Core-core repulsion = 24305.841628 eV Total energy + Delta-G solvation = -4105.983328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.21964 -40.77171 -39.31015 -38.44412 -36.09939 -34.92655 -33.33975 -33.09379 -31.94810 -31.54794 -30.19455 -27.85072 -25.91641 -25.13109 -24.83808 -24.48817 -23.69673 -21.95289 -21.54733 -21.16015 -19.10622 -18.60738 -18.25724 -18.20444 -17.52618 -17.14064 -16.45995 -15.83017 -15.58681 -15.02222 -14.97582 -14.65580 -14.44780 -14.32067 -14.00602 -13.94785 -13.81067 -13.65821 -13.38744 -13.24970 -12.94323 -12.37417 -12.31520 -12.22567 -11.98275 -11.62902 -11.49443 -11.41788 -11.09208 -10.86679 -10.67471 -10.52526 -10.23267 -10.08677 -9.90116 -9.85738 -9.73155 -9.69375 -9.55776 -9.17220 -8.92094 -7.04359 -5.84281 -3.13529 -0.01184 0.01565 1.55549 1.75703 2.36467 2.79761 3.19622 3.26474 3.40325 3.45206 3.45873 3.49846 3.81574 4.07304 4.18082 4.34331 4.41508 4.52645 4.63160 4.66836 4.72289 4.94656 4.95831 5.08345 5.15417 5.27299 5.27701 5.31098 5.41021 5.41551 5.52627 5.58064 5.63082 5.63899 5.77405 5.87166 6.01370 6.14469 6.21284 6.31037 6.51909 6.68321 6.82161 6.90989 6.98030 7.22533 7.65295 7.67348 7.88165 8.34842 9.45657 10.02547 10.36658 11.37944 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.001854 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.095721 B =15100.688670 C =16264.588533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C 0.074 3.926 4 N -0.314 5.314 5 O 0.086 5.914 6 C 0.231 3.769 7 N -0.459 5.459 8 C 0.197 3.803 9 C -0.202 4.202 10 C 0.566 3.434 11 O -0.536 6.536 12 N -0.714 5.714 13 C 0.131 3.869 14 C -0.121 4.121 15 C -0.147 4.147 16 C 0.167 3.833 17 N -0.705 5.705 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.169 4.169 27 C 0.066 3.934 28 C -0.227 4.227 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.182 0.818 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 -21.173 -15.548 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.096 4.096 4 N -0.020 5.020 5 O 0.029 5.971 6 C 0.049 3.951 7 N -0.175 5.175 8 C 0.031 3.969 9 C -0.207 4.207 10 C 0.352 3.648 11 O -0.414 6.414 12 N -0.365 5.365 13 C 0.008 3.992 14 C -0.140 4.140 15 C -0.186 4.186 16 C 0.055 3.945 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.210 4.210 27 C 0.037 3.963 28 C -0.232 4.232 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.199 0.801 35 H 0.238 0.762 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.116 -21.120 -16.853 27.942 hybrid contribution 0.385 0.581 0.935 1.166 sum -6.731 -20.540 -15.918 26.844 Atomic orbital electron populations 1.21760 0.93178 1.02984 1.02824 1.20080 0.96914 0.86731 1.04796 1.24346 1.00093 0.98577 0.86565 1.73505 1.13610 0.91758 1.23118 1.84927 1.66808 1.26013 1.19365 1.21792 0.95740 0.91139 0.86386 1.66441 1.17688 1.28392 1.04946 1.23189 0.89569 0.96357 0.87769 1.21007 1.08080 0.96339 0.95306 1.17695 0.77889 0.83846 0.85407 1.90799 1.47677 1.30311 1.72581 1.45993 1.66634 1.15646 1.08251 1.21584 1.01674 0.98621 0.77316 1.22789 0.98347 0.95618 0.97247 1.23422 1.00751 1.00733 0.93713 1.21051 0.93902 0.85216 0.94380 1.42153 1.21178 0.98515 1.72564 1.19233 0.97109 0.87992 1.33192 0.91049 1.24760 0.97733 0.96749 1.01533 1.69644 1.27409 1.11072 1.49876 0.86249 0.81428 0.79859 0.78519 1.21204 1.21673 1.21202 1.23951 0.93749 1.00508 1.02827 1.20931 0.87656 0.98386 0.89301 1.20879 1.10116 0.96577 0.95639 0.92125 0.90949 0.92023 0.89047 0.88750 0.80081 0.76198 0.91126 0.91365 0.88712 0.90392 0.91247 0.92034 0.78109 0.93359 0.91374 0.91360 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.15 0.37 -0.32 16 2 C -0.05 -0.24 6.55 -27.89 -0.18 -0.43 16 3 C 0.07 0.64 6.84 -79.98 -0.55 0.09 16 4 N -0.31 -3.29 11.94 34.92 0.42 -2.88 16 5 O 0.09 0.98 11.11 16.10 0.18 1.16 16 6 C 0.23 2.57 8.75 -16.20 -0.14 2.43 16 7 N -0.46 -5.05 10.36 -12.61 -0.13 -5.18 16 8 C 0.20 1.75 10.68 -17.04 -0.18 1.57 16 9 C -0.20 -1.89 5.90 -104.74 -0.62 -2.51 16 10 C 0.57 6.27 7.78 -12.39 -0.10 6.17 16 11 O -0.54 -7.55 16.42 5.31 0.09 -7.46 16 12 N -0.71 -7.22 5.51 -61.29 -0.34 -7.56 16 13 C 0.13 1.49 5.51 -4.04 -0.02 1.47 16 14 C -0.12 -1.60 3.65 -89.67 -0.33 -1.93 16 15 C -0.15 -2.14 7.38 -25.92 -0.19 -2.34 16 16 C 0.17 3.05 4.55 -67.12 -0.31 2.75 16 17 N -0.71 -16.61 5.31 -52.64 -0.28 -16.89 16 18 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 22 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.17 -2.56 7.45 -25.78 -0.19 -2.76 16 27 C 0.07 0.58 9.75 -38.80 -0.38 0.20 16 28 C -0.23 -2.15 6.55 -105.22 -0.69 -2.84 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.18 1.12 6.39 -52.49 -0.34 0.78 16 35 H 0.40 3.31 6.52 -40.82 -0.27 3.04 16 36 H 0.07 0.83 7.85 -51.93 -0.41 0.43 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.15 8.11 -51.93 -0.42 0.72 16 42 H 0.38 9.58 7.90 -40.82 -0.32 9.26 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 45 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 46 H 0.16 1.18 7.74 -52.49 -0.41 0.78 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -32.24 391.21 -8.56 -40.80 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.34 Total: 7.32 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.75 Total: -5.51 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.39 Total: -58.93 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: 0.27 Total: -6.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.24 -8.56 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091379951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.351 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds