Wall clock time and date at job start Wed Apr 1 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.55712 * 2 1 4 4 N 1.46501 * 109.46868 * 60.12803 * 3 2 1 5 5 C 1.34777 * 119.99936 * 180.02562 * 4 3 2 6 6 O 1.21775 * 120.00447 * 354.66805 * 5 4 3 7 7 C 1.41819 * 120.00136 * 174.67259 * 5 4 3 8 8 C 1.38528 * 126.78415 * 5.24940 * 7 5 4 9 9 N 1.32327 * 108.21092 * 179.97438 * 8 7 5 10 10 C 1.33194 * 109.81858 * 0.02562 * 9 8 7 11 11 C 1.40659 * 131.82245 * 180.02562 * 10 9 8 12 12 C 1.36275 * 119.38710 * 179.97438 * 11 10 9 13 13 C 1.40179 * 119.61124 * 0.02562 * 12 11 10 14 14 C 1.35258 * 120.12151 * 359.97438 * 13 12 11 15 15 N 1.35957 * 120.63929 * 359.75041 * 14 13 12 16 16 C 1.53297 * 109.51088 * 239.87790 * 2 1 3 17 17 N 1.47235 * 108.40248 * 292.38474 * 16 2 1 18 18 C 1.36940 * 121.03330 * 129.46093 * 17 16 2 19 19 H 1.07995 * 119.99820 * 328.29523 * 18 17 16 20 20 C 1.38807 * 119.99740 * 148.29276 * 18 17 16 21 21 N 1.31624 * 120.00003 * 167.78724 * 20 18 17 22 22 Si 1.86803 * 120.00305 * 347.78839 * 20 18 17 23 23 H 1.48502 * 109.46846 * 85.40711 * 22 20 18 24 24 H 1.48499 * 109.46956 * 205.40337 * 22 20 18 25 25 H 1.48495 * 109.47200 * 325.40442 * 22 20 18 26 26 C 1.47148 * 117.98446 * 309.48278 * 17 16 2 27 27 C 1.53296 * 108.41830 * 50.51811 * 26 17 16 28 28 O 1.42959 * 109.22452 * 307.68069 * 27 26 17 29 29 H 1.09003 * 109.46699 * 299.87087 * 1 2 3 30 30 H 1.09004 * 109.47207 * 59.86505 * 1 2 3 31 31 H 1.08996 * 109.47627 * 179.87680 * 1 2 3 32 32 H 1.08996 * 109.47504 * 180.13312 * 3 2 1 33 33 H 1.09002 * 109.47478 * 300.13123 * 3 2 1 34 34 H 0.97000 * 120.00153 * 0.02562 * 4 3 2 35 35 H 1.08001 * 125.88996 * 359.96958 * 8 7 5 36 36 H 1.08002 * 120.30269 * 359.94158 * 11 10 9 37 37 H 1.08007 * 120.19521 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.93797 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.67904 * 179.97438 * 14 13 12 40 40 H 1.09005 * 109.68189 * 52.09631 * 16 2 1 41 41 H 1.08994 * 109.68794 * 172.65533 * 16 2 1 42 42 H 0.96999 * 120.00027 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.68598 * 290.78022 * 26 17 16 44 44 H 1.09001 * 109.68322 * 170.26674 * 26 17 16 45 45 H 1.09007 * 109.50999 * 67.60196 * 27 26 17 46 46 H 1.08998 * 109.51378 * 187.70280 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 7 1.5573 2.1321 1.1977 5 6 1.8849 3.4219 1.4111 6 8 2.6615 3.9851 0.6610 7 6 1.3251 4.1234 2.5092 8 6 0.5136 3.5989 3.5019 9 7 0.2030 4.5744 4.3404 10 6 0.7724 5.7107 3.9421 11 6 0.7507 7.0098 4.4809 12 6 1.4384 8.0053 3.8540 13 6 2.1555 7.7210 2.6836 14 6 2.1642 6.4653 2.1810 15 7 1.4853 5.4652 2.8033 16 6 2.0420 -0.7251 -1.2498 17 7 1.6957 -2.1515 -1.1342 18 6 1.0610 -2.8088 -2.1541 19 1 0.3717 -2.2768 -2.7929 20 6 1.3037 -4.1589 -2.3669 21 7 0.5288 -4.8470 -3.1784 22 14 2.7300 -4.9993 -1.5014 23 1 2.2974 -5.4443 -0.1523 24 1 3.1660 -6.1764 -2.2947 25 1 3.8602 -4.0452 -1.3693 26 6 2.0520 -2.8498 0.1111 27 6 1.5396 -2.0211 1.2947 28 8 2.0076 -0.6764 1.1654 29 1 -0.3633 0.5118 0.8912 30 1 -0.3634 0.5159 -0.8888 31 1 -0.3634 -1.0276 -0.0022 32 1 3.1321 1.4402 -0.0024 33 1 1.6777 1.9568 -0.8888 34 1 1.0006 1.6609 1.8372 35 1 0.1903 2.5713 3.5782 36 1 0.1937 7.2165 5.3828 37 1 1.4304 9.0077 4.2561 38 1 2.7021 8.5061 2.1822 39 1 2.7188 6.2543 1.2785 40 1 1.5703 -0.3040 -2.1377 41 1 3.1240 -0.6148 -1.3210 42 1 0.6982 -5.7905 -3.3268 43 1 3.1351 -2.9533 0.1771 44 1 1.5876 -3.8358 0.1249 45 1 0.4496 -2.0284 1.2994 46 1 1.9106 -2.4485 2.2262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108038197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:38 Heat of formation + Delta-G solvation = 24.505281 kcal Electronic energy + Delta-G solvation = -30079.448169 eV Core-core repulsion = 25970.861063 eV Total energy + Delta-G solvation = -4108.587105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.99207 -41.18741 -40.19258 -38.41888 -36.79309 -35.94523 -34.64627 -33.81412 -33.35216 -31.44371 -30.47556 -29.88213 -28.10285 -27.41534 -25.05698 -24.80334 -24.59087 -23.33130 -23.14611 -21.63863 -20.60840 -19.44050 -18.90917 -18.06052 -17.67827 -17.50678 -17.35469 -17.26573 -16.69216 -16.63797 -16.04239 -15.93116 -15.82971 -15.55759 -15.52167 -15.39344 -14.96869 -14.60698 -14.26753 -14.10379 -13.78212 -13.47016 -13.32733 -13.29792 -12.99437 -12.95336 -12.92551 -12.56856 -12.35736 -12.15019 -12.10425 -12.04480 -11.61366 -11.56985 -11.24598 -11.09728 -11.00479 -10.51148 -10.25277 -9.98608 -8.99126 -8.87433 -8.18303 -5.59537 -0.35174 -0.20622 1.21375 1.26100 1.26476 1.39989 1.47920 2.25182 2.25880 2.37833 2.47344 2.68676 3.06082 3.10151 3.18318 3.44711 3.68977 3.80417 3.84097 3.88646 3.95236 3.98096 4.13032 4.26164 4.28010 4.30224 4.47006 4.54669 4.57552 4.65556 4.68383 4.75348 4.82545 4.86153 4.94993 5.01848 5.03342 5.05550 5.14756 5.26672 5.35514 5.37637 5.48547 5.82981 5.87177 6.10304 6.23178 6.38922 6.58683 6.82765 7.07218 7.53275 7.96100 9.00976 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031358 B = 0.002234 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.687042 B =12528.511017 C =12811.990151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 C 0.152 3.848 4 N -0.697 5.697 5 C 0.599 3.401 6 O -0.593 6.593 7 C -0.178 4.178 8 C 0.116 3.884 9 N -0.525 5.525 10 C 0.227 3.773 11 C -0.105 4.105 12 C -0.065 4.065 13 C -0.123 4.123 14 C 0.039 3.961 15 N -0.330 5.330 16 C 0.125 3.875 17 N -0.617 5.617 18 C -0.244 4.244 19 H 0.056 0.944 20 C -0.033 4.033 21 N -0.959 5.959 22 Si 0.954 3.046 23 H -0.264 1.264 24 H -0.314 1.314 25 H -0.270 1.270 26 C 0.076 3.924 27 C 0.054 3.946 28 O -0.377 6.377 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.215 0.785 36 H 0.177 0.823 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.166 0.834 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.262 0.738 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 26.482 17.704 31.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 C 0.027 3.973 4 N -0.348 5.348 5 C 0.389 3.611 6 O -0.477 6.477 7 C -0.292 4.292 8 C -0.046 4.046 9 N -0.244 5.244 10 C -0.012 4.012 11 C -0.124 4.124 12 C -0.089 4.089 13 C -0.142 4.142 14 C -0.086 4.086 15 N 0.002 4.998 16 C -0.001 4.001 17 N -0.342 5.342 18 C -0.373 4.373 19 H 0.074 0.926 20 C -0.228 4.228 21 N -0.605 5.605 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.243 1.243 25 H -0.195 1.195 26 C -0.049 4.049 27 C -0.023 4.023 28 O -0.296 6.296 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.252 0.748 35 H 0.232 0.768 36 H 0.194 0.806 37 H 0.210 0.790 38 H 0.210 0.790 39 H 0.183 0.817 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.488 26.686 17.842 32.135 hybrid contribution 0.707 -1.678 -1.052 2.103 sum 2.196 25.008 16.789 30.201 Atomic orbital electron populations 1.22205 0.94024 1.02781 1.02926 1.22057 0.94596 0.90669 0.86949 1.21168 0.99545 0.88623 0.87922 1.45364 1.53515 1.10399 1.25539 1.15516 0.80422 0.82064 0.83059 1.90777 1.37650 1.69002 1.50248 1.19758 1.18083 0.84597 1.06714 1.23635 0.92475 1.00162 0.88291 1.70515 1.26515 0.97976 1.29442 1.21783 0.95214 0.97412 0.86838 1.20825 1.02515 0.86494 1.02599 1.21746 0.92629 1.01271 0.93288 1.21543 1.00559 0.94695 0.97439 1.22355 0.98094 0.87843 1.00285 1.42557 1.30763 1.07475 1.19038 1.21654 0.97847 0.83866 0.96758 1.44349 1.69243 1.07139 1.13505 1.18783 1.17429 0.93019 1.08078 0.92617 1.26006 1.00254 0.98040 0.98514 1.69890 1.40492 1.08601 1.41491 0.85894 0.81126 0.76999 0.77633 1.19042 1.24274 1.19482 1.22218 0.98038 0.97042 0.87566 1.23053 0.99371 0.81873 0.98035 1.87869 1.72969 1.25855 1.42893 0.90350 0.91471 0.92647 0.91455 0.89312 0.74812 0.76836 0.80572 0.79048 0.79034 0.81710 0.90968 0.94823 0.92883 0.94978 0.91537 0.91948 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 7.92 71.98 0.57 -3.93 16 2 C 0.10 2.93 0.76 -10.70 -0.01 2.92 16 3 C 0.15 4.06 4.82 86.38 0.42 4.48 16 4 N -0.70 -16.64 5.13 -471.93 -2.42 -19.06 16 5 C 0.60 16.39 7.59 85.13 0.65 17.03 16 6 O -0.59 -19.59 15.37 -4.59 -0.07 -19.66 16 7 C -0.18 -4.41 6.83 39.08 0.27 -4.15 16 8 C 0.12 2.51 11.32 84.69 0.96 3.47 16 9 N -0.53 -12.49 11.25 -192.73 -2.17 -14.66 16 10 C 0.23 4.78 7.77 134.01 1.04 5.82 16 11 C -0.10 -1.27 10.10 22.40 0.23 -1.04 16 12 C -0.07 -0.41 10.07 22.28 0.22 -0.19 16 13 C -0.12 -1.07 10.00 22.05 0.22 -0.85 16 14 C 0.04 0.69 10.51 83.37 0.88 1.57 16 15 N -0.33 -7.50 2.96 -344.19 -1.02 -8.52 16 16 C 0.12 4.68 5.41 86.34 0.47 5.14 16 17 N -0.62 -27.91 2.31 -697.34 -1.61 -29.52 16 18 C -0.24 -13.37 10.11 84.03 0.85 -12.52 16 19 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 20 C -0.03 -1.90 5.36 84.86 0.45 -1.45 16 21 N -0.96 -59.28 13.97 21.65 0.30 -58.98 16 22 Si 0.95 46.11 24.21 68.60 1.66 47.77 16 23 H -0.26 -11.70 6.41 99.48 0.64 -11.06 16 24 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 25 H -0.27 -12.81 6.54 99.48 0.65 -12.16 16 26 C 0.08 3.08 4.34 86.36 0.37 3.45 16 27 C 0.05 1.69 6.60 72.08 0.48 2.16 16 28 O -0.38 -11.51 9.97 -148.98 -1.49 -12.99 16 29 H 0.08 1.71 6.88 -2.39 -0.02 1.69 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.05 1.84 6.11 -2.39 -0.01 1.83 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.41 8.19 6.00 -92.71 -0.56 7.64 16 35 H 0.22 3.10 7.38 -2.91 -0.02 3.08 16 36 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.19 -0.46 8.06 -2.91 -0.02 -0.48 16 38 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.17 3.25 6.81 -2.91 -0.02 3.23 16 40 H 0.07 2.70 7.96 -2.38 -0.02 2.68 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.03 1.32 6.72 -2.39 -0.02 1.31 16 44 H 0.07 2.90 4.65 -2.39 -0.01 2.88 16 45 H 0.06 1.90 6.25 -2.38 -0.01 1.88 16 46 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -77.92 364.73 1.59 -76.33 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.34 Total: 17.38 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 8.06 Total: 21.92 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -6.92 Total: -130.75 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.56 Total: -32.66 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.66 Total: 47.77 kcal Total: -77.92 1.59 -76.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108038197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.835 kcal (2) G-P(sol) polarization free energy of solvation -77.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds