Wall clock time and date at job start Wed Apr 1 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.51392 * 2 1 4 4 N 1.46505 * 109.47061 * 60.00238 * 3 2 1 5 5 C 1.34773 * 119.99712 * 180.02562 * 4 3 2 6 6 O 1.21584 * 120.00489 * 359.97438 * 5 4 3 7 7 C 1.47595 * 119.99866 * 179.97438 * 5 4 3 8 8 C 1.36573 * 125.92127 * 179.71231 * 7 5 4 9 9 N 1.36198 * 107.09418 * 179.84142 * 8 7 5 10 10 C 1.36683 * 132.29433 * 180.02562 * 9 8 7 11 11 C 1.34838 * 120.64004 * 180.38104 * 10 9 8 12 12 C 1.40570 * 120.34616 * 359.97438 * 11 10 9 13 13 C 1.35896 * 119.73009 * 0.02562 * 12 11 10 14 14 C 1.37268 * 107.34260 * 0.41459 * 9 8 7 15 15 N 1.32236 * 108.37712 * 359.74027 * 14 9 8 16 16 C 1.53296 * 109.51451 * 239.89922 * 2 1 3 17 17 N 1.47156 * 108.37987 * 292.37690 * 16 2 1 18 18 C 1.36939 * 120.97826 * 129.44493 * 17 16 2 19 19 H 1.08004 * 119.99681 * 206.23236 * 18 17 16 20 20 C 1.38817 * 119.99993 * 26.23073 * 18 17 16 21 21 N 1.31611 * 120.00239 * 16.92722 * 20 18 17 22 22 Si 1.86805 * 119.99558 * 196.92383 * 20 18 17 23 23 H 1.48496 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46891 * 120.00032 * 22 20 18 25 25 H 1.48495 * 109.46949 * 239.99658 * 22 20 18 26 26 C 1.47149 * 118.04086 * 309.46053 * 17 16 2 27 27 C 1.53293 * 108.38161 * 50.53662 * 26 17 16 28 28 O 1.42965 * 109.51356 * 120.14931 * 2 1 3 29 29 H 1.09004 * 109.46778 * 180.10449 * 1 2 3 30 30 H 1.09001 * 109.46885 * 300.09863 * 1 2 3 31 31 H 1.08988 * 109.46978 * 60.10252 * 1 2 3 32 32 H 1.08998 * 109.47361 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46916 * 300.00286 * 3 2 1 34 34 H 0.97003 * 120.00222 * 359.97438 * 4 3 2 35 35 H 1.08000 * 126.45383 * 359.97266 * 8 7 5 36 36 H 1.08002 * 119.67499 * 0.35739 * 10 9 8 37 37 H 1.08002 * 119.82923 * 180.02562 * 11 10 9 38 38 H 1.07999 * 120.14130 * 179.97438 * 12 11 10 39 39 H 1.07998 * 120.33010 * 179.97438 * 13 12 11 40 40 H 1.08996 * 109.68345 * 52.09790 * 16 2 1 41 41 H 1.08998 * 109.68067 * 172.61796 * 16 2 1 42 42 H 0.97005 * 120.00086 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.68650 * 170.26109 * 26 17 16 44 44 H 1.08997 * 109.68239 * 290.81656 * 26 17 16 45 45 H 1.09008 * 109.51189 * 67.62134 * 27 26 17 46 46 H 1.09005 * 109.51524 * 187.72333 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5533 2.1331 1.1962 5 6 1.8794 3.4233 1.4092 6 8 2.5788 4.0137 0.6089 7 6 1.3875 4.1196 2.6141 8 6 1.6469 5.4173 2.9515 9 7 1.0052 5.6610 4.1278 10 6 0.9188 6.7752 4.9148 11 6 0.2094 6.7534 6.0613 12 6 -0.4537 5.5812 6.4640 13 6 -0.3775 4.4650 5.6926 14 6 0.3699 4.5010 4.4954 15 7 0.6104 3.5839 3.5735 16 6 2.0421 -0.7247 -1.2500 17 7 1.6960 -2.1503 -1.1344 18 6 1.0608 -2.8064 -2.1549 19 1 0.4476 -3.6697 -1.9427 20 6 1.2052 -2.3618 -3.4620 21 7 2.1874 -1.5433 -3.7740 22 14 0.0053 -2.9256 -4.7781 23 1 -1.0002 -3.8361 -4.1739 24 1 -0.6827 -1.7448 -5.3592 25 1 0.7447 -3.6434 -5.8472 26 6 2.0522 -2.8498 0.1102 27 6 1.5397 -2.0216 1.2939 28 8 2.0075 -0.6768 1.1652 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5122 -0.8908 32 1 3.1310 1.4413 0.0005 33 1 1.6781 1.9562 -0.8899 34 1 0.9949 1.6622 1.8346 35 1 2.2461 6.1189 2.3901 36 1 1.4240 7.6817 4.6156 37 1 0.1496 7.6415 6.6730 38 1 -1.0206 5.5673 7.3831 39 1 -0.8828 3.5590 5.9930 40 1 1.5705 -0.3032 -2.1377 41 1 3.1240 -0.6136 -1.3214 42 1 2.2880 -1.2323 -4.6874 43 1 1.5873 -3.8356 0.1232 44 1 3.1352 -2.9533 0.1761 45 1 0.4496 -2.0290 1.2986 46 1 1.9107 -2.4494 2.2254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108379850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:30 Heat of formation + Delta-G solvation = 43.487833 kcal Electronic energy + Delta-G solvation = -29889.875807 eV Core-core repulsion = 25782.111847 eV Total energy + Delta-G solvation = -4107.763960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.13207 -39.63661 -38.69156 -37.43752 -34.88462 -34.28614 -34.02968 -31.76232 -31.21629 -30.63025 -29.16245 -27.88897 -26.64305 -25.82872 -24.29525 -23.18613 -22.96829 -22.83639 -21.11398 -20.11171 -18.70596 -18.27390 -17.42754 -17.07686 -16.87105 -16.34726 -15.82027 -15.61437 -15.36451 -15.03803 -14.87233 -14.54209 -14.36468 -14.29735 -13.96392 -13.68183 -13.44052 -12.94679 -12.82457 -12.75907 -12.47919 -12.20083 -12.07552 -11.78401 -11.50464 -11.45910 -11.13800 -10.98146 -10.79302 -10.62230 -10.59430 -10.25858 -10.19433 -10.07456 -9.87040 -9.47157 -9.23638 -8.98162 -8.71404 -8.50535 -8.25921 -6.70284 -5.81388 -3.24439 0.27084 0.86962 1.92219 2.13898 3.04232 3.33764 3.37293 3.43954 3.45637 3.56302 3.77165 4.10978 4.29312 4.32885 4.46343 4.47092 4.65043 4.96188 5.06422 5.13876 5.21398 5.37916 5.39423 5.54572 5.58192 5.59598 5.73281 5.77344 5.99213 6.01290 6.02570 6.06389 6.12477 6.18541 6.21102 6.37356 6.54570 6.60777 6.64883 6.74853 6.82586 6.88897 7.12309 7.35038 7.51269 7.74313 7.82443 7.95558 8.36107 8.39837 9.14105 9.77327 10.34739 11.26566 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.002296 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.054070 B =12193.458727 C =12637.388689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 C 0.139 3.861 4 N -0.697 5.697 5 C 0.594 3.406 6 O -0.542 6.542 7 C 0.014 3.986 8 C -0.020 4.020 9 N -0.366 5.366 10 C 0.055 3.945 11 C -0.140 4.140 12 C -0.105 4.105 13 C -0.072 4.072 14 C 0.222 3.778 15 N -0.461 5.461 16 C 0.160 3.840 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.383 6.383 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.412 0.588 35 H 0.197 0.803 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.097 0.903 41 H 0.030 0.970 42 H 0.255 0.745 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 16.691 21.200 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 C 0.015 3.985 4 N -0.347 5.347 5 C 0.378 3.622 6 O -0.420 6.420 7 C -0.119 4.119 8 C -0.155 4.155 9 N -0.038 5.038 10 C -0.066 4.066 11 C -0.160 4.160 12 C -0.129 4.129 13 C -0.092 4.092 14 C -0.023 4.023 15 N -0.182 5.182 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.217 1.217 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.302 6.302 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.213 0.787 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.171 0.829 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.682 16.399 20.477 26.649 hybrid contribution -0.633 0.218 -0.614 0.909 sum -5.315 16.618 19.863 26.438 Atomic orbital electron populations 1.22212 0.95712 1.03208 1.00888 1.22542 0.93647 0.90533 0.89521 1.21436 1.00004 0.90035 0.87027 1.45799 1.52248 1.10909 1.25737 1.16882 0.80120 0.81884 0.83280 1.90803 1.38584 1.66705 1.45896 1.20742 1.01707 0.92376 0.97079 1.22633 1.04830 0.99293 0.88771 1.42775 1.33341 1.11073 1.16595 1.21683 1.02190 0.90101 0.92583 1.20849 0.98954 1.00146 0.96081 1.21058 0.99538 0.91981 1.00310 1.20372 0.98000 1.00528 0.90331 1.21002 1.00736 0.82248 0.98312 1.70874 1.17062 1.28270 1.02029 1.21297 0.97831 0.83926 0.93639 1.44004 1.68607 1.04978 1.13847 1.19202 1.21459 1.12103 0.85371 0.91390 1.25037 0.97327 1.00170 0.97084 1.70024 1.29215 1.36885 1.18425 0.86228 0.80764 0.78009 0.81813 1.20271 1.21484 1.21692 1.21599 0.97531 0.95198 0.87376 1.23032 0.98349 0.83132 0.98653 1.87829 1.72829 1.25776 1.43792 0.90833 0.93704 0.91929 0.90597 0.89821 0.75170 0.78653 0.81718 0.83056 0.83854 0.82868 0.88516 0.95221 0.93506 0.92077 0.95665 0.93363 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.92 37.16 0.29 -2.68 16 2 C 0.08 1.54 0.76 -90.47 -0.07 1.47 16 3 C 0.14 2.54 4.82 -4.04 -0.02 2.52 16 4 N -0.70 -11.70 5.15 -61.33 -0.32 -12.01 16 5 C 0.59 10.09 7.82 -12.44 -0.10 9.99 16 6 O -0.54 -10.41 16.87 5.29 0.09 -10.32 16 7 C 0.01 0.21 6.94 -83.44 -0.58 -0.37 16 8 C -0.02 -0.24 11.47 -16.21 -0.19 -0.42 16 9 N -0.37 -3.70 2.93 -62.37 -0.18 -3.88 16 10 C 0.06 0.34 10.93 -16.60 -0.18 0.16 16 11 C -0.14 -0.63 9.98 -39.91 -0.40 -1.03 16 12 C -0.11 -0.55 10.06 -39.54 -0.40 -0.95 16 13 C -0.07 -0.58 10.11 -39.30 -0.40 -0.98 16 14 C 0.22 2.59 7.79 -156.04 -1.22 1.37 16 15 N -0.46 -6.63 11.01 -9.35 -0.10 -6.73 16 16 C 0.16 3.81 4.11 -3.53 -0.01 3.79 16 17 N -0.59 -14.65 2.57 -171.83 -0.44 -15.09 16 18 C -0.25 -6.79 9.65 -15.06 -0.15 -6.93 16 19 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 20 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 21 N -0.90 -25.92 11.14 55.49 0.62 -25.30 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 C 0.11 2.30 6.73 -3.54 -0.02 2.28 16 27 C 0.05 0.84 6.60 37.31 0.25 1.08 16 28 O -0.38 -7.47 9.98 -35.23 -0.35 -7.83 16 29 H 0.07 1.44 6.11 -51.93 -0.32 1.12 16 30 H 0.04 0.72 6.86 -51.93 -0.36 0.37 16 31 H 0.06 1.15 8.14 -51.94 -0.42 0.73 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.41 6.70 6.90 -40.82 -0.28 6.42 16 35 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.17 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.15 0.20 8.06 -52.49 -0.42 -0.23 16 38 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.10 2.53 6.13 -51.93 -0.32 2.21 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.85 6.25 -51.92 -0.32 0.53 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -33.90 376.75 -9.52 -43.42 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.21 Total: 6.30 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -3.27 Total: 9.29 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.42 Total: -63.01 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.26 Total: -18.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.90 -9.52 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108379850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.906 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds