Wall clock time and date at job start Wed Apr 1 2020 02:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35364 * 127.25007 * 2 1 4 4 N 1.35034 * 107.22954 * 180.23943 * 3 2 1 5 5 H 0.96999 * 124.88257 * 179.76355 * 4 3 2 6 6 N 1.28469 * 110.22764 * 359.75921 * 4 3 2 7 7 C 1.31800 * 110.07721 * 0.02562 * 6 4 3 8 8 C 1.47709 * 126.52004 * 179.97438 * 7 6 4 9 9 O 1.21572 * 120.00381 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00127 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.54412 * 129.01250 * 180.02562 * 11 10 8 13 13 C 1.54419 * 78.89086 * 180.64334 * 12 11 10 14 14 C 1.50703 * 129.01419 * 180.64405 * 13 12 11 15 15 O 1.21281 * 119.99538 * 359.97438 * 14 13 12 16 16 N 1.34769 * 119.99988 * 180.02562 * 14 13 12 17 17 C 1.47584 * 134.49063 * 180.02562 * 16 14 13 18 18 C 1.53947 * 86.11565 * 204.63541 * 17 16 14 19 19 C 1.50699 * 113.73968 * 222.04272 * 18 17 16 20 20 H 1.07998 * 120.00165 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99722 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99969 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99800 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47099 * 60.00960 * 23 21 19 25 25 H 1.48500 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47582 * 300.00427 * 23 21 19 27 27 C 1.47577 * 134.49641 * 359.97438 * 16 14 13 28 28 C 1.54891 * 84.49409 * 43.15382 * 13 12 11 29 29 C 1.54885 * 84.49103 * 318.13307 * 13 12 11 30 30 H 1.08993 * 109.47465 * 270.13791 * 1 2 3 31 31 H 1.08996 * 109.46869 * 30.14447 * 1 2 3 32 32 H 1.09006 * 109.46839 * 150.14147 * 1 2 3 33 33 H 1.08001 * 126.38430 * 359.96858 * 3 2 1 34 34 H 0.97004 * 119.99616 * 0.02562 * 10 8 7 35 35 H 1.08992 * 114.93459 * 68.15798 * 12 11 10 36 36 H 1.08998 * 114.98218 * 293.12337 * 12 11 10 37 37 H 1.09001 * 113.76908 * 90.33461 * 17 16 14 38 38 H 1.08997 * 113.76763 * 318.93723 * 17 16 14 39 39 H 1.08997 * 113.73914 * 90.73986 * 18 17 16 40 40 H 0.97000 * 119.99858 * 179.97438 * 22 21 19 41 41 H 1.08995 * 113.76947 * 41.05826 * 27 16 14 42 42 H 1.09001 * 113.87193 * 269.67722 * 27 16 14 43 43 H 1.09001 * 114.98080 * 69.39259 * 28 13 12 44 44 H 1.09003 * 114.97457 * 204.56822 * 28 13 12 45 45 H 1.09008 * 114.97367 * 155.43371 * 29 13 12 46 46 H 1.08998 * 114.98354 * 290.60293 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0054 5 1 4.3887 1.1729 -0.0099 6 7 3.5998 -0.6695 -0.0036 7 6 2.3635 -1.1264 0.0024 8 6 1.9506 -2.5446 0.0057 9 8 0.7698 -2.8339 0.0108 10 7 2.8828 -3.5180 0.0030 11 6 2.4733 -4.9246 0.0057 12 6 3.3535 -6.1932 0.0039 13 6 1.9390 -6.8125 -0.0078 14 6 1.5395 -8.2656 -0.0050 15 8 2.3915 -9.1286 0.0076 16 7 0.2356 -8.6060 -0.0175 17 6 -0.4992 -9.8859 -0.0186 18 6 -1.6509 -9.1038 -0.6758 19 6 -3.0113 -9.4545 -0.1303 20 1 -3.1056 -10.1946 0.6505 21 6 -4.1353 -8.8296 -0.6274 22 7 -4.0204 -7.9279 -1.5778 23 14 -5.8215 -9.2637 0.0492 24 1 -5.8616 -8.9698 1.5044 25 1 -6.8567 -8.4587 -0.6475 26 1 -6.0867 -10.7080 -0.1716 27 6 -1.0310 -7.8487 -0.0345 28 6 1.6303 -5.7168 -1.0582 29 6 1.6086 -5.7068 1.0252 30 1 -0.3634 0.0025 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3633 -0.8913 -0.5117 33 1 2.0221 2.1137 -0.0005 34 1 3.8250 -3.2871 -0.0007 35 1 3.9206 -6.3602 0.9196 36 1 3.9317 -6.3511 -0.9064 37 1 -0.7340 -10.2586 0.9784 38 1 -0.0586 -10.6449 -0.6650 39 1 -1.6157 -9.1036 -1.7652 40 1 -4.8112 -7.4886 -1.9278 41 1 -1.0150 -6.9807 -0.6935 42 1 -1.4231 -7.6227 0.9571 43 1 2.1229 -5.8505 -2.0213 44 1 0.5798 -5.4363 -1.1355 45 1 0.5568 -5.4256 1.0779 46 1 2.0810 -5.8312 1.9996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275193765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:02 Heat of formation + Delta-G solvation = 138.390124 kcal Electronic energy + Delta-G solvation = -29503.235360 eV Core-core repulsion = 25399.586672 eV Total energy + Delta-G solvation = -4103.648688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.01631 -41.98796 -39.15423 -38.68942 -36.72254 -33.98713 -33.30854 -32.61688 -31.46782 -29.28269 -27.40615 -26.07667 -25.69840 -25.60512 -25.01588 -24.93929 -23.30034 -21.24894 -20.47599 -19.93324 -18.90912 -18.51831 -17.77339 -17.29793 -16.82251 -16.44597 -16.16078 -15.65633 -14.77599 -14.66258 -14.61070 -14.42084 -14.15179 -14.12258 -14.01692 -13.43068 -13.30735 -13.17822 -13.06952 -12.33493 -12.28462 -11.98815 -11.74266 -11.54641 -11.38406 -11.19099 -11.16276 -11.08070 -10.91698 -10.76729 -10.43557 -10.37636 -10.31415 -10.01931 -9.78880 -9.59157 -9.24139 -9.19695 -9.03961 -8.93007 -8.53550 -7.81733 -6.12423 -4.18217 1.26388 1.77176 2.42334 2.78365 2.99880 3.19387 3.29579 3.35050 3.36686 3.55240 4.05907 4.22497 4.37785 4.41418 4.45377 4.45814 4.53407 4.75651 4.86817 4.99592 5.09540 5.18573 5.21999 5.61930 5.63433 5.67637 5.72440 5.74106 5.87169 5.91798 5.97588 6.07827 6.11403 6.15976 6.25455 6.27826 6.33041 6.43064 6.50118 6.59710 6.66182 6.75752 6.88881 7.24491 7.53571 7.60010 7.84733 8.08178 8.21900 8.52140 8.80104 8.84787 9.48347 10.97121 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.002693 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.549488 B =10396.250543 C =12546.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.140 4.140 3 C -0.022 4.022 4 N -0.381 5.381 5 H 0.447 0.553 6 N -0.260 5.260 7 C -0.010 4.010 8 C 0.605 3.395 9 O -0.507 6.507 10 N -0.665 5.665 11 C 0.093 3.907 12 C -0.082 4.082 13 C -0.142 4.142 14 C 0.589 3.411 15 O -0.561 6.561 16 N -0.631 5.631 17 C 0.104 3.896 18 C 0.034 3.966 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.069 3.931 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.105 3.895 28 C -0.099 4.099 29 C -0.096 4.096 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.185 0.815 34 H 0.411 0.589 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.265 0.735 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.829 20.076 2.876 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.150 4.150 3 C -0.166 4.166 4 N -0.095 5.095 5 H 0.291 0.709 6 N -0.097 5.097 7 C -0.171 4.171 8 C 0.390 3.610 9 O -0.379 6.379 10 N -0.315 5.315 11 C 0.005 3.995 12 C -0.120 4.120 13 C -0.146 4.146 14 C 0.377 3.623 15 O -0.441 6.441 16 N -0.363 5.363 17 C -0.017 4.017 18 C 0.015 3.985 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.135 4.135 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.017 4.017 28 C -0.138 4.138 29 C -0.135 4.135 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.202 0.798 34 H 0.247 0.753 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.558 19.250 2.758 24.904 hybrid contribution -0.683 0.878 0.390 1.179 sum 14.876 20.128 3.147 25.226 Atomic orbital electron populations 1.20233 0.87727 1.03463 1.02702 1.20453 0.97827 0.90253 1.06508 1.22728 0.84043 1.00672 1.09127 1.43193 1.08669 1.04341 1.53300 0.70874 1.73493 1.23125 0.94018 1.19086 1.21807 0.89578 0.94857 1.10893 1.16860 0.85458 0.82286 0.76433 1.90846 1.16514 1.82225 1.48326 1.44416 1.09779 1.02587 1.74699 1.23242 0.97522 0.80151 0.98629 1.23965 0.94887 0.90323 1.02845 1.23225 0.98514 0.92223 1.00607 1.18008 0.81460 0.86431 0.76448 1.90638 1.50010 1.50648 1.52827 1.50342 1.03626 1.12588 1.69724 1.23545 0.90542 0.87084 1.00573 1.20507 0.91764 0.89233 0.96980 1.20915 0.90140 1.23612 1.21192 0.91946 1.25019 0.99293 0.94706 0.94497 1.69938 1.30049 1.25612 1.26504 0.86613 0.83398 0.78538 0.79214 1.20091 1.21248 1.20122 1.23767 0.78282 0.98995 1.00645 1.24842 1.01467 0.91454 0.96077 1.24349 1.01263 0.91527 0.96332 0.91196 0.91832 0.89541 0.79775 0.75251 0.90039 0.89910 0.90681 0.91952 0.91685 0.92572 0.91637 0.90672 0.90457 0.88945 0.88989 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.93 36.01 0.36 -0.44 16 2 C -0.14 -1.39 6.25 -104.40 -0.65 -2.04 16 3 C -0.02 -0.14 11.97 -17.17 -0.21 -0.34 16 4 N -0.38 -2.27 6.83 30.47 0.21 -2.07 16 5 H 0.45 0.84 8.96 -190.44 -1.71 -0.86 16 6 N -0.26 -2.46 11.92 33.42 0.40 -2.06 16 7 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 8 C 0.61 8.31 7.83 -12.39 -0.10 8.21 16 9 O -0.51 -8.51 15.04 5.30 0.08 -8.43 16 10 N -0.67 -8.03 5.71 -63.68 -0.36 -8.39 16 11 C 0.09 1.26 3.92 -147.16 -0.58 0.69 16 12 C -0.08 -1.09 7.78 -26.71 -0.21 -1.30 16 13 C -0.14 -2.35 3.11 -172.27 -0.54 -2.89 16 14 C 0.59 12.04 8.17 -10.99 -0.09 11.95 16 15 O -0.56 -12.91 17.82 5.56 0.10 -12.81 16 16 N -0.63 -13.24 3.61 -178.41 -0.64 -13.89 16 17 C 0.10 2.21 8.39 -2.97 -0.02 2.18 16 18 C 0.03 0.82 3.62 -90.83 -0.33 0.49 16 19 C -0.52 -13.38 8.77 -34.44 -0.30 -13.68 16 20 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 22 N -0.88 -24.37 13.27 55.43 0.74 -23.64 16 23 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 C 0.11 2.29 8.17 -2.96 -0.02 2.26 16 28 C -0.10 -1.54 7.93 -24.71 -0.20 -1.74 16 29 C -0.10 -1.45 7.76 -25.99 -0.20 -1.65 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.05 6.72 -51.93 -0.35 0.70 16 33 H 0.19 0.44 8.06 -52.49 -0.42 0.02 16 34 H 0.41 3.97 8.56 -40.82 -0.35 3.62 16 35 H 0.08 1.00 7.94 -51.93 -0.41 0.58 16 36 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 37 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.68 8.13 -51.93 -0.42 1.26 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.07 1.44 7.63 -51.93 -0.40 1.04 16 42 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 43 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 44 H 0.09 1.60 7.45 -51.93 -0.39 1.21 16 45 H 0.09 1.53 7.97 -51.92 -0.41 1.11 16 46 H 0.07 1.04 7.93 -51.93 -0.41 0.62 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -33.10 393.13 -10.10 -43.20 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.75 Total: 4.11 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.77 Total: 2.70 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.34 Total: -50.04 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.18 Total: -21.24 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.10 -10.10 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275193765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.594 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds