Wall clock time and date at job start Wed Apr 1 2020 02:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35364 * 127.25007 * 2 1 4 4 N 1.35034 * 107.22954 * 180.23943 * 3 2 1 5 5 H 0.96999 * 124.88257 * 179.76355 * 4 3 2 6 6 N 1.28469 * 110.22764 * 359.75921 * 4 3 2 7 7 C 1.31800 * 110.07721 * 0.02562 * 6 4 3 8 8 C 1.47709 * 126.52004 * 179.97438 * 7 6 4 9 9 O 1.21572 * 120.00381 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00127 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.54412 * 129.01250 * 180.02562 * 11 10 8 13 13 C 1.54419 * 78.89086 * 180.64334 * 12 11 10 14 14 C 1.50703 * 129.01419 * 180.64405 * 13 12 11 15 15 O 1.21281 * 119.99538 * 359.97438 * 14 13 12 16 16 N 1.34769 * 119.99988 * 180.02562 * 14 13 12 17 17 C 1.47584 * 134.49063 * 180.02562 * 16 14 13 18 18 C 1.53947 * 86.11565 * 204.63541 * 17 16 14 19 19 C 1.50699 * 113.73968 * 222.04272 * 18 17 16 20 20 H 1.07998 * 120.00165 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99722 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99969 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99800 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47099 * 60.00960 * 23 21 19 25 25 H 1.48500 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47582 * 300.00427 * 23 21 19 27 27 C 1.47577 * 134.49641 * 359.97438 * 16 14 13 28 28 C 1.54891 * 84.49409 * 43.15382 * 13 12 11 29 29 C 1.54885 * 84.49103 * 318.13307 * 13 12 11 30 30 H 1.08993 * 109.47465 * 270.13791 * 1 2 3 31 31 H 1.08996 * 109.46869 * 30.14447 * 1 2 3 32 32 H 1.09006 * 109.46839 * 150.14147 * 1 2 3 33 33 H 1.08001 * 126.38430 * 359.96858 * 3 2 1 34 34 H 0.97004 * 119.99616 * 0.02562 * 10 8 7 35 35 H 1.08992 * 114.93459 * 68.15798 * 12 11 10 36 36 H 1.08998 * 114.98218 * 293.12337 * 12 11 10 37 37 H 1.09001 * 113.76908 * 90.33461 * 17 16 14 38 38 H 1.08997 * 113.76763 * 318.93723 * 17 16 14 39 39 H 1.08997 * 113.73914 * 90.73986 * 18 17 16 40 40 H 0.97000 * 119.99858 * 179.97438 * 22 21 19 41 41 H 1.08995 * 113.76947 * 41.05826 * 27 16 14 42 42 H 1.09001 * 113.87193 * 269.67722 * 27 16 14 43 43 H 1.09001 * 114.98080 * 69.39259 * 28 13 12 44 44 H 1.09003 * 114.97457 * 204.56822 * 28 13 12 45 45 H 1.09008 * 114.97367 * 155.43371 * 29 13 12 46 46 H 1.08998 * 114.98354 * 290.60293 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0054 5 1 4.3887 1.1729 -0.0099 6 7 3.5998 -0.6695 -0.0036 7 6 2.3635 -1.1264 0.0024 8 6 1.9506 -2.5446 0.0057 9 8 0.7698 -2.8339 0.0108 10 7 2.8828 -3.5180 0.0030 11 6 2.4733 -4.9246 0.0057 12 6 3.3535 -6.1932 0.0039 13 6 1.9390 -6.8125 -0.0078 14 6 1.5395 -8.2656 -0.0050 15 8 2.3915 -9.1286 0.0076 16 7 0.2356 -8.6060 -0.0175 17 6 -0.4992 -9.8859 -0.0186 18 6 -1.6509 -9.1038 -0.6758 19 6 -3.0113 -9.4545 -0.1303 20 1 -3.1056 -10.1946 0.6505 21 6 -4.1353 -8.8296 -0.6274 22 7 -4.0204 -7.9279 -1.5778 23 14 -5.8215 -9.2637 0.0492 24 1 -5.8616 -8.9698 1.5044 25 1 -6.8567 -8.4587 -0.6475 26 1 -6.0867 -10.7080 -0.1716 27 6 -1.0310 -7.8487 -0.0345 28 6 1.6303 -5.7168 -1.0582 29 6 1.6086 -5.7068 1.0252 30 1 -0.3634 0.0025 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3633 -0.8913 -0.5117 33 1 2.0221 2.1137 -0.0005 34 1 3.8250 -3.2871 -0.0007 35 1 3.9206 -6.3602 0.9196 36 1 3.9317 -6.3511 -0.9064 37 1 -0.7340 -10.2586 0.9784 38 1 -0.0586 -10.6449 -0.6650 39 1 -1.6157 -9.1036 -1.7652 40 1 -4.8112 -7.4886 -1.9278 41 1 -1.0150 -6.9807 -0.6935 42 1 -1.4231 -7.6227 0.9571 43 1 2.1229 -5.8505 -2.0213 44 1 0.5798 -5.4363 -1.1355 45 1 0.5568 -5.4256 1.0779 46 1 2.0810 -5.8312 1.9996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275193765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:00 Heat of formation + Delta-G solvation = 115.444953 kcal Electronic energy + Delta-G solvation = -29504.230337 eV Core-core repulsion = 25399.586672 eV Total energy + Delta-G solvation = -4104.643665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.66635 -43.21400 -40.70719 -39.95421 -38.48067 -35.04067 -34.62074 -34.00068 -32.16325 -31.08221 -28.10795 -27.68458 -27.01503 -26.92049 -26.68094 -26.13877 -24.63665 -22.26652 -21.53597 -21.16762 -20.24264 -19.29170 -19.11039 -18.69071 -18.22130 -17.88157 -17.31526 -16.88911 -16.61614 -16.16536 -15.84017 -15.65071 -15.43107 -15.29028 -15.06765 -14.86520 -14.40995 -14.11092 -14.01896 -13.80047 -13.63519 -13.33552 -13.17596 -13.06605 -12.90574 -12.80173 -12.69472 -12.46167 -12.27919 -12.23354 -11.89042 -11.61047 -11.54207 -11.44572 -11.18247 -11.08365 -10.74659 -10.52886 -10.49990 -10.14469 -9.80027 -9.59068 -8.15061 -6.26819 0.45112 1.16316 1.39283 1.48844 1.49374 1.55901 1.57864 1.94452 2.16879 2.23289 2.46741 3.04167 3.15257 3.18976 3.23870 3.27323 3.37787 3.43999 3.52850 3.93782 4.15352 4.29016 4.40956 4.43090 4.49017 4.51707 4.56073 4.56856 4.61583 4.65965 4.74235 4.77173 4.79585 4.84433 4.89381 4.90710 5.01570 5.03246 5.07880 5.18951 5.40717 5.53786 5.59306 5.81727 6.12249 6.22629 6.38668 6.79855 6.82054 6.85076 7.09869 7.11561 7.43170 8.94503 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.002693 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.549488 B =10396.250543 C =12546.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.359 5.359 5 H 0.467 0.533 6 N -0.265 5.265 7 C -0.042 4.042 8 C 0.601 3.399 9 O -0.549 6.549 10 N -0.654 5.654 11 C 0.114 3.886 12 C -0.060 4.060 13 C -0.165 4.165 14 C 0.587 3.413 15 O -0.586 6.586 16 N -0.633 5.633 17 C 0.111 3.889 18 C 0.024 3.976 19 C -0.531 4.531 20 H 0.068 0.932 21 C 0.019 3.981 22 N -0.918 5.918 23 Si 0.958 3.042 24 H -0.268 1.268 25 H -0.288 1.288 26 H -0.269 1.269 27 C 0.122 3.878 28 C -0.104 4.104 29 C -0.095 4.095 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.231 0.769 34 H 0.425 0.575 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.602 22.229 3.873 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.185 4.185 3 C -0.135 4.135 4 N -0.076 5.076 5 H 0.316 0.684 6 N -0.104 5.104 7 C -0.201 4.201 8 C 0.387 3.613 9 O -0.424 6.424 10 N -0.304 5.304 11 C 0.024 3.976 12 C -0.098 4.098 13 C -0.169 4.169 14 C 0.377 3.623 15 O -0.468 6.468 16 N -0.365 5.365 17 C -0.011 4.011 18 C 0.005 3.995 19 C -0.569 4.569 20 H 0.086 0.914 21 C -0.181 4.181 22 N -0.556 5.556 23 Si 0.784 3.216 24 H -0.193 1.193 25 H -0.213 1.213 26 H -0.194 1.194 27 C 0.000 4.000 28 C -0.144 4.144 29 C -0.134 4.134 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.247 0.753 34 H 0.265 0.735 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.396 21.408 3.763 27.840 hybrid contribution -1.181 0.282 0.047 1.215 sum 16.215 21.690 3.810 27.348 Atomic orbital electron populations 1.20140 0.88253 1.02956 1.02343 1.20677 0.98095 0.91087 1.08686 1.23278 0.83055 1.01634 1.05575 1.43349 1.09782 1.03539 1.50960 0.68419 1.73420 1.22014 0.95645 1.19309 1.21577 0.90951 0.93942 1.13616 1.17291 0.85025 0.83534 0.75457 1.90831 1.18238 1.83070 1.50245 1.44325 1.10409 1.01536 1.74128 1.22892 0.97071 0.81172 0.96434 1.23893 0.93052 0.88257 1.04645 1.23148 1.01710 0.90231 1.01811 1.18516 0.80612 0.87904 0.75270 1.90611 1.50325 1.51928 1.53908 1.50318 1.03942 1.12170 1.70054 1.23451 0.89448 0.87193 1.01003 1.20410 0.92387 0.91197 0.95489 1.21240 0.91038 1.23455 1.21135 0.91374 1.25790 1.02912 0.94622 0.94765 1.70063 1.30879 1.26807 1.27889 0.85603 0.78952 0.78366 0.78706 1.19330 1.21345 1.19434 1.23446 0.78583 0.97850 1.00135 1.24858 1.00561 0.91888 0.97066 1.24338 1.00564 0.91230 0.97275 0.91568 0.89240 0.93056 0.75261 0.73543 0.88034 0.88313 0.89406 0.91377 0.94568 0.92703 0.92625 0.90557 0.89407 0.91700 0.91316 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.93 71.24 0.71 -0.81 16 2 C -0.18 -3.25 6.25 -19.72 -0.12 -3.38 16 3 C 0.01 0.08 11.97 83.54 1.00 1.08 16 4 N -0.36 -3.04 6.83 -57.51 -0.39 -3.44 16 5 H 0.47 -0.16 8.96 -219.99 -1.97 -2.14 16 6 N -0.27 -4.44 11.92 -48.18 -0.57 -5.01 16 7 C -0.04 -0.94 7.13 42.46 0.30 -0.64 16 8 C 0.60 16.80 7.83 86.75 0.68 17.48 16 9 O -0.55 -19.56 15.04 -3.94 -0.06 -19.62 16 10 N -0.65 -15.34 5.71 -473.64 -2.70 -18.05 16 11 C 0.11 3.02 3.92 -6.34 -0.02 3.00 16 12 C -0.06 -1.50 7.78 30.61 0.24 -1.26 16 13 C -0.17 -5.49 3.11 -63.68 -0.20 -5.68 16 14 C 0.59 24.21 8.17 87.66 0.72 24.92 16 15 O -0.59 -26.82 17.82 -3.03 -0.05 -26.88 16 16 N -0.63 -27.17 3.61 -836.76 -3.02 -30.19 16 17 C 0.11 4.75 8.39 86.48 0.73 5.47 16 18 C 0.02 1.20 3.62 -10.87 -0.04 1.16 16 19 C -0.53 -27.67 8.77 25.60 0.22 -27.45 16 20 H 0.07 3.41 7.81 -2.91 -0.02 3.38 16 21 C 0.02 1.03 5.46 84.66 0.46 1.50 16 22 N -0.92 -52.10 13.27 21.45 0.28 -51.81 16 23 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 27 C 0.12 5.54 8.17 86.49 0.71 6.24 16 28 C -0.10 -3.33 7.93 31.90 0.25 -3.08 16 29 C -0.09 -2.89 7.76 31.07 0.24 -2.65 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.34 6.72 -2.38 -0.02 1.33 16 33 H 0.23 -0.17 8.06 -2.91 -0.02 -0.20 16 34 H 0.43 7.52 8.56 -92.71 -0.79 6.73 16 35 H 0.10 2.17 7.94 -2.39 -0.02 2.15 16 36 H 0.10 2.18 7.91 -2.39 -0.02 2.16 16 37 H 0.09 3.54 8.09 -2.39 -0.02 3.52 16 38 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.04 1.97 8.13 -2.39 -0.02 1.95 16 40 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.06 2.60 7.63 -2.39 -0.02 2.58 16 42 H 0.08 3.42 8.09 -2.39 -0.02 3.40 16 43 H 0.09 2.56 7.91 -2.39 -0.02 2.54 16 44 H 0.06 2.42 7.45 -2.39 -0.02 2.40 16 45 H 0.07 2.41 7.97 -2.38 -0.02 2.39 16 46 H 0.09 2.46 7.93 -2.39 -0.02 2.44 16 Total: -1.00 -74.58 393.13 -0.35 -74.93 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -1.72 Total: 20.09 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 5.87 Total: 15.91 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -6.40 Total: -108.49 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.11 Total: -46.49 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -74.58 -0.35 -74.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275193765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.371 kcal (2) G-P(sol) polarization free energy of solvation -74.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds