Wall clock time and date at job start Wed Apr 1 2020 04:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47433 * 2 1 4 4 C 1.53002 * 109.46830 * 239.99859 * 2 1 3 5 5 C 1.50699 * 109.46919 * 120.00544 * 2 1 3 6 6 O 1.21283 * 120.00415 * 357.58854 * 5 2 1 7 7 N 1.34780 * 119.99953 * 177.59640 * 5 2 1 8 8 C 1.47583 * 134.48982 * 175.23845 * 7 5 2 9 9 C 1.53949 * 86.23612 * 204.69055 * 8 7 5 10 10 C 1.53004 * 113.74409 * 221.99026 * 9 8 7 11 11 C 1.53004 * 109.46819 * 294.90611 * 10 9 8 12 12 O 1.42904 * 109.46749 * 184.99098 * 11 10 9 13 13 N 1.46501 * 113.74337 * 90.79048 * 9 8 7 14 14 C 1.34773 * 120.00224 * 185.66693 * 13 9 8 15 15 O 1.21285 * 120.00031 * 5.19586 * 14 13 9 16 16 C 1.50701 * 120.00126 * 185.19908 * 14 13 9 17 17 S 1.81004 * 109.47085 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99817 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00268 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99834 * 179.97438 * 18 17 16 21 21 N 1.31636 * 120.00018 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47107 * 89.99910 * 22 20 18 24 24 H 1.48501 * 109.47042 * 209.99798 * 22 20 18 25 25 H 1.48493 * 109.47337 * 329.99748 * 22 20 18 26 26 C 1.47926 * 134.63151 * 355.31300 * 7 5 2 27 27 H 1.08996 * 109.46861 * 299.99793 * 1 2 3 28 28 H 1.09001 * 109.46619 * 59.99820 * 1 2 3 29 29 H 1.08996 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47018 * 186.18482 * 3 2 1 31 31 H 1.08999 * 109.47205 * 306.19447 * 3 2 1 32 32 H 1.09005 * 109.46462 * 66.18913 * 3 2 1 33 33 H 1.08996 * 109.47550 * 300.00145 * 4 2 1 34 34 H 1.09001 * 109.47257 * 60.00712 * 4 2 1 35 35 H 1.09000 * 109.47088 * 180.02562 * 4 2 1 36 36 H 1.08991 * 113.77106 * 90.33361 * 8 7 5 37 37 H 1.09002 * 113.76951 * 319.03855 * 8 7 5 38 38 H 1.09001 * 109.46807 * 54.89977 * 10 9 8 39 39 H 1.08992 * 109.47464 * 174.90145 * 10 9 8 40 40 H 1.09002 * 109.47206 * 304.98992 * 11 10 9 41 41 H 1.09000 * 109.47160 * 64.98979 * 11 10 9 42 42 H 0.96701 * 113.99473 * 179.97438 * 12 11 10 43 43 H 0.97002 * 119.99855 * 5.66057 * 13 9 8 44 44 H 1.09001 * 109.47265 * 299.99783 * 16 14 13 45 45 H 1.08995 * 109.47027 * 59.99980 * 16 14 13 46 46 H 0.97007 * 119.99777 * 180.02562 * 21 20 18 47 47 H 1.08998 * 113.76514 * 41.00116 * 26 7 5 48 48 H 1.08994 * 113.87019 * 269.62353 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2451 -1.1331 2.0506 7 7 3.3564 -0.8763 1.4195 8 6 4.1847 -1.4239 2.5114 9 6 5.3157 -0.5353 1.9626 10 6 6.6808 -1.2254 1.9303 11 6 7.1339 -1.5267 3.3603 12 8 8.4576 -2.0648 3.3370 13 7 5.3642 0.7982 2.5673 14 6 6.2309 1.7187 2.1006 15 8 6.9037 1.4764 1.1210 16 6 6.3641 3.0491 2.7958 17 16 7.5970 4.0581 1.9367 18 6 7.5497 5.5118 2.9313 19 1 6.8835 5.5641 3.7798 20 6 8.3685 6.5896 2.6244 21 7 9.1808 6.5257 1.5906 22 14 8.3188 8.1304 3.6793 23 1 9.3095 8.0096 4.7790 24 1 8.6484 9.3131 2.8439 25 1 6.9592 8.2935 4.2537 26 6 4.5653 -0.5824 0.6193 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1245 1.4443 -0.1107 31 1 1.5891 1.9873 -0.8293 32 1 1.7700 1.9232 0.9403 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7217 -1.2491 36 1 4.3816 -2.4920 2.4201 37 1 3.8447 -1.1376 3.5067 38 1 6.6037 -2.1570 1.3697 39 1 7.4075 -0.5710 1.4491 40 1 7.1257 -0.6071 3.9454 41 1 6.4553 -2.2506 3.8115 42 1 8.8103 -2.2794 4.2115 43 1 4.7724 1.0187 3.3036 44 1 5.4029 3.5630 2.7844 45 1 6.6789 2.8902 3.8271 46 1 9.7533 7.2789 1.3763 47 1 4.5279 0.3769 0.1031 48 1 4.8754 -1.4021 -0.0287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334581957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:06 Heat of formation + Delta-G solvation = -123.228685 kcal Electronic energy + Delta-G solvation = -29069.028075 eV Core-core repulsion = 25057.185945 eV Total energy + Delta-G solvation = -4011.842131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28130 -40.59883 -39.11888 -37.67603 -36.65932 -34.86384 -34.57127 -32.81835 -30.44904 -29.20467 -28.32821 -28.26683 -27.64648 -27.27628 -24.57545 -23.08875 -22.30003 -20.47402 -19.84377 -19.69786 -18.44404 -17.91016 -17.75251 -17.11171 -16.87239 -16.82636 -16.72633 -16.44820 -15.96652 -15.64965 -15.30968 -15.16919 -14.79805 -14.74916 -14.46849 -14.35604 -13.98281 -13.86585 -13.50924 -13.40023 -13.16443 -13.15051 -13.07598 -12.96901 -12.88648 -12.78453 -12.61526 -12.60797 -12.35328 -11.96647 -11.91093 -11.72734 -11.61774 -11.13902 -11.00921 -10.77038 -10.68311 -10.26327 -10.21866 -9.77001 -8.63526 -8.34373 -6.10857 1.26121 1.41730 1.45792 1.51692 1.56256 1.58606 1.70575 2.14533 2.27995 2.92627 2.99977 3.21618 3.32179 3.41112 3.69545 3.79594 3.86073 3.89483 4.10844 4.16011 4.24361 4.29710 4.31916 4.38593 4.44574 4.51088 4.51969 4.55870 4.57697 4.63194 4.70445 4.72766 4.77941 4.87868 4.90398 4.98035 5.01719 5.17196 5.24745 5.25920 5.32031 5.42498 5.49925 6.20070 6.43297 6.54181 6.91976 7.04043 7.07663 7.21792 8.74428 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.003122 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.777000 B = 8967.535665 C =10756.139212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.140 4.140 5 C 0.545 3.455 6 O -0.581 6.581 7 N -0.639 5.639 8 C 0.113 3.887 9 C 0.151 3.849 10 C -0.122 4.122 11 C 0.080 3.920 12 O -0.596 6.596 13 N -0.697 5.697 14 C 0.544 3.456 15 O -0.541 6.541 16 C -0.133 4.133 17 S -0.137 6.137 18 C -0.548 4.548 19 H 0.080 0.920 20 C 0.016 3.984 21 N -0.909 5.909 22 Si 0.994 3.006 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.260 1.260 26 C 0.099 3.901 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.396 0.604 43 H 0.414 0.586 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.271 0.729 47 H 0.082 0.918 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 -18.444 0.872 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.084 4.084 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.336 3.664 6 O -0.461 6.461 7 N -0.373 5.373 8 C -0.009 4.009 9 C 0.063 3.937 10 C -0.161 4.161 11 C 0.003 3.997 12 O -0.404 6.404 13 N -0.351 5.351 14 C 0.330 3.670 15 O -0.418 6.418 16 C -0.284 4.284 17 S 0.090 5.910 18 C -0.696 4.696 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.816 3.184 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.184 1.184 26 C -0.024 4.024 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.246 0.754 43 H 0.251 0.749 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.095 -18.884 -1.078 23.005 hybrid contribution -0.666 1.481 2.515 2.994 sum -13.761 -17.403 1.437 22.232 Atomic orbital electron populations 1.21653 0.91666 1.02340 1.02482 1.20809 0.97952 0.96473 0.93145 1.21875 1.01429 0.93402 1.02892 1.21924 1.01745 1.00364 0.95729 1.20706 0.79896 0.78187 0.87602 1.90670 1.55117 1.52510 1.47849 1.49999 1.03972 1.61614 1.21724 1.23658 0.84469 0.99681 0.93122 1.21654 0.94407 0.83053 0.94594 1.21687 0.95060 1.01413 0.97896 1.22118 0.83792 0.97379 0.96442 1.86445 1.31909 1.85794 1.36272 1.45441 1.40127 1.11217 1.38309 1.19858 0.78869 0.84782 0.83460 1.90691 1.45359 1.79108 1.26593 1.23385 1.04673 0.96432 1.03934 1.85488 1.50695 1.13347 1.41501 1.23203 1.28261 1.01661 1.16495 0.90226 1.26051 0.93919 1.02147 0.96774 1.70170 1.23769 1.32862 1.27761 0.85019 0.79184 0.76401 0.77803 1.19389 1.20303 1.18381 1.23957 0.80036 1.03152 0.95237 0.93321 0.89866 0.92690 0.92409 0.89831 0.93234 0.92058 0.89801 0.91677 0.85631 0.88682 0.88099 0.91618 0.94559 0.90738 0.75410 0.74874 0.87813 0.87646 0.92007 0.89934 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 7.77 71.98 0.56 -1.63 16 2 C -0.08 -1.48 0.79 -52.93 -0.04 -1.52 16 3 C -0.14 -2.58 8.32 71.98 0.60 -1.98 16 4 C -0.14 -2.00 8.32 71.98 0.60 -1.40 16 5 C 0.54 12.42 6.71 87.66 0.59 13.01 16 6 O -0.58 -17.41 16.71 -3.04 -0.05 -17.46 16 7 N -0.64 -11.71 3.54 -832.65 -2.95 -14.66 16 8 C 0.11 1.58 7.49 86.48 0.65 2.23 16 9 C 0.15 2.70 0.62 5.24 0.00 2.70 16 10 C -0.12 -2.43 4.86 30.60 0.15 -2.29 16 11 C 0.08 1.42 6.80 71.98 0.49 1.91 16 12 O -0.60 -12.51 13.66 -148.98 -2.04 -14.54 16 13 N -0.70 -15.07 4.96 -426.76 -2.12 -17.18 16 14 C 0.54 17.62 7.53 87.66 0.66 18.28 16 15 O -0.54 -21.65 13.87 -3.05 -0.04 -21.69 16 16 C -0.13 -4.93 6.16 71.24 0.44 -4.50 16 17 S -0.14 -7.30 20.57 -56.49 -1.16 -8.46 16 18 C -0.55 -30.62 9.50 67.95 0.65 -29.97 16 19 H 0.08 4.16 7.80 -2.91 -0.02 4.13 16 20 C 0.02 0.90 5.49 84.86 0.47 1.37 16 21 N -0.91 -54.81 13.22 21.65 0.29 -54.52 16 22 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 C 0.10 1.74 5.55 86.41 0.48 2.22 16 27 H 0.05 0.98 8.07 -2.39 -0.02 0.97 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 30 H 0.06 1.17 5.68 -2.39 -0.01 1.16 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.91 5.79 -2.39 -0.01 0.89 16 36 H 0.13 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 38 H 0.10 1.59 8.05 -2.39 -0.02 1.57 16 39 H 0.07 1.95 6.09 -2.39 -0.01 1.93 16 40 H 0.04 0.71 7.84 -2.39 -0.02 0.70 16 41 H 0.07 0.83 7.78 -2.39 -0.02 0.82 16 42 H 0.40 4.66 9.12 -74.06 -0.68 3.98 16 43 H 0.41 7.12 8.63 -92.71 -0.80 6.32 16 44 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 46 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 47 H 0.08 1.76 5.88 -2.39 -0.01 1.74 16 48 H 0.12 1.60 7.95 -2.39 -0.02 1.58 16 Total: -1.00 -80.35 401.61 -0.25 -80.61 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.49 Total: 24.44 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.28 Total: -1.55 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -4.78 Total: -86.36 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -2.13 Total: -53.69 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.16 Total: -8.46 kcal Total: -80.35 -0.25 -80.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334581957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.623 kcal (2) G-P(sol) polarization free energy of solvation -80.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds