Wall clock time and date at job start Wed Apr 1 2020 04:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47111 * 2 1 4 4 C 1.53007 * 109.46682 * 120.00061 * 2 1 3 5 5 C 1.50701 * 109.46819 * 175.00044 * 4 2 1 6 6 O 1.21280 * 119.99788 * 359.97438 * 5 4 2 7 7 N 1.34768 * 119.99876 * 179.97438 * 5 4 2 8 8 C 1.47423 * 125.65179 * 359.97204 * 7 5 4 9 9 C 1.54913 * 104.83468 * 155.90653 * 8 7 5 10 10 C 1.55149 * 101.57937 * 37.01298 * 9 8 7 11 11 O 1.42903 * 110.72423 * 83.04145 * 10 9 8 12 12 C 1.53006 * 110.71868 * 206.13599 * 10 9 8 13 13 N 1.46500 * 109.46998 * 303.54495 * 12 10 9 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 10 15 15 O 1.21282 * 119.99854 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00461 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47558 * 179.97438 * 16 14 13 18 18 C 1.76195 * 99.99992 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99977 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99980 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99680 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00225 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47428 * 119.99945 * 22 20 18 25 25 H 1.48498 * 109.47293 * 239.99993 * 22 20 18 26 26 C 1.47030 * 125.65008 * 180.02562 * 7 5 4 27 27 H 1.09005 * 109.47230 * 300.00203 * 1 2 3 28 28 H 1.09000 * 109.47088 * 60.00041 * 1 2 3 29 29 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46799 * 239.99168 * 2 1 3 31 31 H 1.08996 * 109.47871 * 60.00284 * 3 2 1 32 32 H 1.09009 * 109.46888 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47045 * 299.99193 * 3 2 1 34 34 H 1.08990 * 109.47260 * 54.99841 * 4 2 1 35 35 H 1.09001 * 109.46791 * 294.99215 * 4 2 1 36 36 H 1.09004 * 110.36690 * 37.07189 * 8 7 5 37 37 H 1.09002 * 110.46126 * 274.79706 * 8 7 5 38 38 H 1.08997 * 111.00502 * 278.93661 * 9 8 7 39 39 H 1.08998 * 111.00171 * 155.08385 * 9 8 7 40 40 H 0.96695 * 114.00286 * 63.83699 * 11 10 9 41 41 H 1.08993 * 109.46955 * 63.54720 * 12 10 9 42 42 H 1.09000 * 109.47050 * 183.54549 * 12 10 9 43 43 H 0.97010 * 119.99909 * 359.97438 * 13 12 10 44 44 H 1.08996 * 109.47077 * 300.00146 * 16 14 13 45 45 H 1.09004 * 109.46818 * 59.99313 * 16 14 13 46 46 H 0.97009 * 119.99708 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.88215 * 61.60533 * 26 7 5 48 48 H 1.09008 * 109.87874 * 300.44029 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.8295 1.1890 6 8 4.1449 -0.3749 0.2400 7 7 4.2148 -1.4313 2.1896 8 6 3.6107 -2.0242 3.3966 9 6 4.6395 -3.0772 3.8788 10 6 5.9826 -2.3670 3.5643 11 8 6.3330 -1.4608 4.6121 12 6 7.0974 -3.3912 3.3418 13 7 7.2060 -4.2580 4.5179 14 6 8.1275 -5.2408 4.5479 15 8 8.8667 -5.4081 3.6011 16 6 8.2389 -6.1328 5.7575 17 16 9.5576 -7.3443 5.4945 18 6 9.4700 -8.2273 7.0168 19 1 8.7427 -7.9451 7.7636 20 6 10.3357 -9.2855 7.2561 21 7 11.2218 -9.6297 6.3456 22 14 10.2423 -10.2220 8.8696 23 1 9.1692 -9.6425 9.7170 24 1 9.9409 -11.6502 8.5964 25 1 11.5429 -10.1175 9.5786 26 6 5.6732 -1.6045 2.2587 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.6768 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 2.6637 -2.5044 3.1502 37 1 3.4610 -1.2620 4.1614 38 1 4.5453 -4.0035 3.3122 39 1 4.5368 -3.2627 4.9479 40 1 6.4986 -1.8887 5.4633 41 1 6.8656 -3.9958 2.4651 42 1 8.0425 -2.8713 3.1851 43 1 6.6150 -4.1239 5.2755 44 1 8.4699 -5.5284 6.6346 45 1 7.2938 -6.6530 5.9135 46 1 11.8271 -10.3691 6.5130 47 1 6.1619 -0.6304 2.2735 48 1 6.0189 -2.1821 1.4013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358861942.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:29 Heat of formation + Delta-G solvation = -133.407281 kcal Electronic energy + Delta-G solvation = -27457.764648 eV Core-core repulsion = 23445.481140 eV Total energy + Delta-G solvation = -4012.283508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.90579 -39.61063 -38.60130 -36.20618 -35.66388 -34.30963 -32.47742 -31.62433 -30.23572 -29.60247 -28.27325 -27.45514 -25.72770 -25.28803 -23.71225 -21.33235 -20.73917 -20.47200 -19.49625 -18.17690 -17.69974 -17.31605 -16.71044 -16.25598 -15.85728 -15.76431 -15.59527 -15.22061 -14.84953 -14.64231 -14.40949 -14.13214 -14.01161 -13.83038 -13.49398 -13.33601 -13.09125 -12.95407 -12.65303 -12.62203 -12.51688 -12.41658 -12.25458 -12.07397 -11.80560 -11.47568 -11.37625 -11.26363 -11.10988 -11.07322 -11.06950 -10.80380 -10.47079 -10.06030 -9.86026 -9.54643 -9.15082 -9.09905 -9.04159 -8.29519 -6.56026 -6.26627 -3.97822 2.28901 2.46734 2.90394 2.96575 3.18078 3.23402 3.27812 3.50706 3.59037 3.89120 3.99483 4.12633 4.15542 4.32125 4.39687 4.49118 4.68905 4.76457 4.82774 4.99732 5.03377 5.05963 5.08854 5.15057 5.19558 5.22763 5.29745 5.31520 5.37422 5.44242 5.49886 5.52160 5.53521 5.59940 5.70559 5.72297 5.79166 5.81602 5.97890 6.03951 6.09284 6.37032 7.06112 7.14080 7.48258 7.55059 7.80881 8.30229 8.46212 9.18884 10.80817 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030621 B = 0.001662 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.185231 B =16847.363679 C =17079.910671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.132 4.132 5 C 0.529 3.471 6 O -0.534 6.534 7 N -0.619 5.619 8 C 0.104 3.896 9 C -0.162 4.162 10 C 0.112 3.888 11 O -0.544 6.544 12 C 0.104 3.896 13 N -0.740 5.740 14 C 0.533 3.467 15 O -0.512 6.512 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.124 3.876 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.381 0.619 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.395 0.605 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.084 0.916 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.741 19.303 -5.533 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.211 4.211 4 C -0.171 4.171 5 C 0.318 3.682 6 O -0.410 6.410 7 N -0.355 5.355 8 C -0.019 4.019 9 C -0.200 4.200 10 C 0.070 3.930 11 O -0.351 6.351 12 C -0.021 4.021 13 N -0.396 5.396 14 C 0.319 3.681 15 O -0.385 6.385 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C 0.001 3.999 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.230 0.770 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.229 0.771 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.143 19.631 -8.248 30.007 hybrid contribution -1.119 -0.870 3.128 3.435 sum -22.263 18.761 -5.119 29.560 Atomic orbital electron populations 1.21863 0.94819 1.01779 1.02063 1.20886 0.95155 0.96966 0.97083 1.21963 1.03133 0.94932 1.01087 1.21771 0.91294 1.02985 1.01099 1.20451 0.90041 0.76864 0.80826 1.90697 1.70398 1.47245 1.32673 1.48497 1.07281 1.58414 1.21274 1.22311 0.96925 0.95600 0.87061 1.23525 0.94412 0.98875 1.03196 1.22309 0.92829 0.88956 0.88901 1.86584 1.91385 1.35862 1.21226 1.21833 0.98891 0.91600 0.89810 1.45933 1.39162 1.34767 1.19741 1.20335 0.79100 0.79795 0.88832 1.90727 1.41545 1.69373 1.36870 1.23530 1.07016 1.01884 0.97979 1.85452 1.39505 1.33076 1.25253 1.22899 1.23263 1.19359 1.02965 0.90844 1.24998 0.94483 0.96319 0.97774 1.70028 1.18997 1.27593 1.33572 0.86108 0.78164 0.79311 0.81849 1.19626 1.20547 1.20539 1.21722 0.81407 1.01603 0.95138 0.92636 0.92285 0.92636 0.90342 0.93367 0.90744 0.92855 0.88893 0.88907 0.90177 0.90657 0.88855 0.88890 0.77004 0.90210 0.90094 0.77148 0.89133 0.89172 0.92178 0.89772 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 2 C -0.08 -0.56 2.57 -90.62 -0.23 -0.80 16 3 C -0.15 -1.19 8.93 37.15 0.33 -0.86 16 4 C -0.13 -0.82 4.18 -27.88 -0.12 -0.93 16 5 C 0.53 5.07 7.57 -10.99 -0.08 4.99 16 6 O -0.53 -7.06 14.29 5.56 0.08 -6.98 16 7 N -0.62 -5.18 3.33 -170.51 -0.57 -5.75 16 8 C 0.10 0.56 6.68 -2.53 -0.02 0.55 16 9 C -0.16 -0.89 5.51 -24.58 -0.14 -1.02 16 10 C 0.11 0.85 0.93 -88.79 -0.08 0.77 16 11 O -0.54 -4.28 13.10 -35.23 -0.46 -4.74 16 12 C 0.10 1.05 4.84 -4.04 -0.02 1.03 16 13 N -0.74 -8.13 5.13 -60.29 -0.31 -8.44 16 14 C 0.53 9.09 7.85 -10.99 -0.09 9.01 16 15 O -0.51 -11.08 15.86 5.56 0.09 -11.00 16 16 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 22 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 C 0.12 1.14 6.23 -3.06 -0.02 1.12 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.76 5.95 -51.92 -0.31 0.45 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.42 7.85 -51.93 -0.41 0.02 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.30 7.48 -51.93 -0.39 -0.09 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.56 8.05 -51.93 -0.42 0.15 16 39 H 0.09 0.34 7.89 -51.93 -0.41 -0.07 16 40 H 0.38 1.88 8.44 45.56 0.38 2.27 16 41 H 0.08 0.87 7.97 -51.93 -0.41 0.46 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.39 2.94 7.29 -40.82 -0.30 2.64 16 44 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 45 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 48 H 0.09 0.83 7.71 -51.92 -0.40 0.43 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -36.66 404.20 -8.54 -45.21 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.26 Total: 0.27 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 0.30 Total: -1.81 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.14 Total: -39.18 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.29 Total: -22.72 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.66 -8.54 -45.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358861942.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.200 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds