Wall clock time and date at job start Wed Apr 1 2020 04:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47111 * 2 1 4 4 C 1.53007 * 109.46682 * 120.00061 * 2 1 3 5 5 C 1.50701 * 109.46819 * 175.00044 * 4 2 1 6 6 O 1.21280 * 119.99788 * 359.97438 * 5 4 2 7 7 N 1.34768 * 119.99876 * 179.97438 * 5 4 2 8 8 C 1.47423 * 125.65179 * 359.97204 * 7 5 4 9 9 C 1.54913 * 104.83468 * 155.90653 * 8 7 5 10 10 C 1.55149 * 101.57937 * 37.01298 * 9 8 7 11 11 O 1.42903 * 110.72423 * 83.04145 * 10 9 8 12 12 C 1.53006 * 110.71868 * 206.13599 * 10 9 8 13 13 N 1.46500 * 109.46998 * 303.54495 * 12 10 9 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 10 15 15 O 1.21282 * 119.99854 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00461 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47558 * 179.97438 * 16 14 13 18 18 C 1.76195 * 99.99992 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99977 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99980 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99680 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00225 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47428 * 119.99945 * 22 20 18 25 25 H 1.48498 * 109.47293 * 239.99993 * 22 20 18 26 26 C 1.47030 * 125.65008 * 180.02562 * 7 5 4 27 27 H 1.09005 * 109.47230 * 300.00203 * 1 2 3 28 28 H 1.09000 * 109.47088 * 60.00041 * 1 2 3 29 29 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46799 * 239.99168 * 2 1 3 31 31 H 1.08996 * 109.47871 * 60.00284 * 3 2 1 32 32 H 1.09009 * 109.46888 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47045 * 299.99193 * 3 2 1 34 34 H 1.08990 * 109.47260 * 54.99841 * 4 2 1 35 35 H 1.09001 * 109.46791 * 294.99215 * 4 2 1 36 36 H 1.09004 * 110.36690 * 37.07189 * 8 7 5 37 37 H 1.09002 * 110.46126 * 274.79706 * 8 7 5 38 38 H 1.08997 * 111.00502 * 278.93661 * 9 8 7 39 39 H 1.08998 * 111.00171 * 155.08385 * 9 8 7 40 40 H 0.96695 * 114.00286 * 63.83699 * 11 10 9 41 41 H 1.08993 * 109.46955 * 63.54720 * 12 10 9 42 42 H 1.09000 * 109.47050 * 183.54549 * 12 10 9 43 43 H 0.97010 * 119.99909 * 359.97438 * 13 12 10 44 44 H 1.08996 * 109.47077 * 300.00146 * 16 14 13 45 45 H 1.09004 * 109.46818 * 59.99313 * 16 14 13 46 46 H 0.97009 * 119.99708 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.88215 * 61.60533 * 26 7 5 48 48 H 1.09008 * 109.87874 * 300.44029 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.8295 1.1890 6 8 4.1449 -0.3749 0.2400 7 7 4.2148 -1.4313 2.1896 8 6 3.6107 -2.0242 3.3966 9 6 4.6395 -3.0772 3.8788 10 6 5.9826 -2.3670 3.5643 11 8 6.3330 -1.4608 4.6121 12 6 7.0974 -3.3912 3.3418 13 7 7.2060 -4.2580 4.5179 14 6 8.1275 -5.2408 4.5479 15 8 8.8667 -5.4081 3.6011 16 6 8.2389 -6.1328 5.7575 17 16 9.5576 -7.3443 5.4945 18 6 9.4700 -8.2273 7.0168 19 1 8.7427 -7.9451 7.7636 20 6 10.3357 -9.2855 7.2561 21 7 11.2218 -9.6297 6.3456 22 14 10.2423 -10.2220 8.8696 23 1 9.1692 -9.6425 9.7170 24 1 9.9409 -11.6502 8.5964 25 1 11.5429 -10.1175 9.5786 26 6 5.6732 -1.6045 2.2587 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.6768 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 2.6637 -2.5044 3.1502 37 1 3.4610 -1.2620 4.1614 38 1 4.5453 -4.0035 3.3122 39 1 4.5368 -3.2627 4.9479 40 1 6.4986 -1.8887 5.4633 41 1 6.8656 -3.9958 2.4651 42 1 8.0425 -2.8713 3.1851 43 1 6.6150 -4.1239 5.2755 44 1 8.4699 -5.5284 6.6346 45 1 7.2938 -6.6530 5.9135 46 1 11.8271 -10.3691 6.5130 47 1 6.1619 -0.6304 2.2735 48 1 6.0189 -2.1821 1.4013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358861942.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:28 Heat of formation + Delta-G solvation = -161.968485 kcal Electronic energy + Delta-G solvation = -27459.003154 eV Core-core repulsion = 23445.481140 eV Total energy + Delta-G solvation = -4013.522014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61759 -40.67322 -39.55651 -36.83858 -36.32075 -35.39261 -34.57017 -32.46482 -31.12000 -30.50115 -29.02785 -27.95593 -27.67798 -26.32641 -24.26986 -22.09423 -21.69669 -21.26288 -20.12182 -19.90519 -18.49131 -18.24682 -17.80479 -17.11331 -16.87195 -16.75851 -16.61391 -16.53132 -16.13837 -15.67087 -15.47272 -15.03465 -14.73852 -14.67477 -14.52172 -14.40366 -14.31196 -13.78029 -13.62718 -13.45696 -13.18356 -13.14491 -13.02511 -12.91678 -12.83041 -12.73129 -12.60828 -12.50388 -12.06250 -12.03610 -11.76702 -11.69246 -11.58208 -11.14910 -11.09073 -11.02561 -10.77528 -10.24597 -10.23652 -9.73824 -8.65485 -8.33717 -6.11559 1.27202 1.42738 1.47798 1.58230 1.59213 1.59927 1.84695 2.21940 2.28943 2.93153 3.01104 3.29514 3.33593 3.39236 3.50160 3.74288 3.87380 3.98054 4.01069 4.09268 4.26631 4.32973 4.33909 4.46825 4.53708 4.56592 4.59972 4.64614 4.69920 4.72260 4.73597 4.78209 4.84997 4.90121 5.03564 5.09084 5.10905 5.17175 5.28852 5.31461 5.43834 5.45933 5.50616 6.21295 6.42110 6.45267 6.67241 7.08194 7.12170 7.20955 8.75639 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030621 B = 0.001662 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.185231 B =16847.363679 C =17079.910671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.123 4.123 5 C 0.518 3.482 6 O -0.582 6.582 7 N -0.620 5.620 8 C 0.101 3.899 9 C -0.156 4.156 10 C 0.128 3.872 11 O -0.553 6.553 12 C 0.106 3.894 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.566 6.566 16 C -0.128 4.128 17 S -0.158 6.158 18 C -0.543 4.543 19 H 0.086 0.914 20 C 0.012 3.988 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.254 1.254 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.119 3.881 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.396 0.604 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.418 0.582 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.270 0.730 47 H 0.064 0.936 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.222 19.531 -2.556 32.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 C -0.209 4.209 4 C -0.163 4.163 5 C 0.310 3.690 6 O -0.462 6.462 7 N -0.354 5.354 8 C -0.021 4.021 9 C -0.194 4.194 10 C 0.086 3.914 11 O -0.362 6.362 12 C -0.018 4.018 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.444 6.444 16 C -0.279 4.279 17 S 0.069 5.931 18 C -0.691 4.691 19 H 0.104 0.896 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.177 1.177 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.005 4.005 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.141 0.859 40 H 0.247 0.753 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.256 0.744 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.691 19.886 -5.207 32.128 hybrid contribution -0.071 -0.798 2.148 2.292 sum -24.762 19.088 -3.059 31.415 Atomic orbital electron populations 1.21810 0.92860 1.02638 1.02594 1.20878 0.96643 0.96003 0.96726 1.21924 1.01132 0.96087 1.01785 1.21813 0.88432 1.04577 1.01447 1.21193 0.91503 0.76087 0.80259 1.90679 1.71579 1.49327 1.34660 1.48621 1.06827 1.57927 1.22003 1.22574 0.97726 0.95839 0.85933 1.23576 0.92279 0.98457 1.05107 1.22001 0.93017 0.87980 0.88385 1.86579 1.91470 1.36226 1.21941 1.21844 0.99277 0.91683 0.89039 1.45505 1.37407 1.32590 1.20677 1.20101 0.79574 0.80547 0.87593 1.90722 1.44051 1.71101 1.38511 1.23361 1.04659 1.00334 0.99542 1.85681 1.44267 1.36558 1.26571 1.23248 1.23446 1.19449 1.02986 0.89583 1.26128 0.93901 0.97407 1.01791 1.70199 1.20167 1.28438 1.36123 0.84905 0.78616 0.77586 0.76837 1.17738 1.20117 1.20189 1.21637 0.82451 1.00556 0.95841 0.91421 0.92472 0.91596 0.92590 0.92071 0.93774 0.92743 0.86464 0.86693 0.87540 0.89465 0.89007 0.85896 0.75310 0.90966 0.91958 0.74415 0.86764 0.86651 0.92083 0.91809 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.19 71.98 0.66 -0.42 16 2 C -0.08 -1.07 2.57 -10.79 -0.03 -1.10 16 3 C -0.15 -2.35 8.93 71.98 0.64 -1.70 16 4 C -0.12 -1.25 4.18 29.85 0.12 -1.13 16 5 C 0.52 9.71 7.57 87.66 0.66 10.38 16 6 O -0.58 -16.31 14.29 -3.03 -0.04 -16.35 16 7 N -0.62 -9.58 3.33 -811.77 -2.70 -12.28 16 8 C 0.10 0.72 6.68 86.86 0.58 1.30 16 9 C -0.16 -1.13 5.51 31.98 0.18 -0.95 16 10 C 0.13 1.73 0.93 -9.61 -0.01 1.72 16 11 O -0.55 -7.35 13.10 -148.98 -1.95 -9.31 16 12 C 0.11 2.07 4.84 86.38 0.42 2.49 16 13 N -0.71 -13.88 5.13 -463.06 -2.38 -16.26 16 14 C 0.54 17.71 7.85 87.66 0.69 18.40 16 15 O -0.57 -25.05 15.86 -3.04 -0.05 -25.10 16 16 C -0.13 -4.55 6.16 71.24 0.44 -4.11 16 17 S -0.16 -8.45 20.57 -56.49 -1.16 -9.62 16 18 C -0.54 -29.93 9.50 67.95 0.65 -29.29 16 19 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.69 5.49 84.86 0.47 1.15 16 21 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 22 Si 1.00 42.39 29.55 68.60 2.03 44.42 16 23 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 26 C 0.12 2.19 6.23 86.73 0.54 2.73 16 27 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.96 7.95 -2.39 -0.02 0.94 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.96 5.95 -2.38 -0.01 0.95 16 33 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.12 0.64 7.85 -2.39 -0.02 0.62 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.27 7.48 -2.39 -0.02 0.25 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.77 8.05 -2.39 -0.02 0.75 16 39 H 0.12 0.20 7.89 -2.39 -0.02 0.19 16 40 H 0.40 2.48 8.44 -74.06 -0.62 1.85 16 41 H 0.07 1.58 7.97 -2.39 -0.02 1.56 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.42 4.48 7.29 -92.70 -0.68 3.80 16 44 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 45 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 46 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 47 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 48 H 0.08 1.53 7.71 -2.38 -0.02 1.52 16 Total: -1.00 -85.50 404.20 -0.29 -85.79 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.33 Total: 14.21 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 6.01 Total: -0.53 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -4.79 Total: -83.52 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -2.04 Total: -50.76 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.62 kcal Total: -85.50 -0.29 -85.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358861942.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.175 kcal (2) G-P(sol) polarization free energy of solvation -85.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds