Wall clock time and date at job start Wed Apr 1 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47201 * 2 1 4 4 N 1.31920 * 119.40563 * 270.27447 * 3 2 1 5 5 C 1.32206 * 121.80113 * 180.26476 * 4 3 2 6 6 O 1.35420 * 119.80424 * 179.72784 * 5 4 3 7 7 C 1.40341 * 120.39460 * 359.75037 * 5 4 3 8 8 C 1.47492 * 120.59768 * 179.97438 * 7 5 4 9 9 O 1.21599 * 119.99982 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00058 * 179.97438 * 8 7 5 11 11 C 1.39384 * 120.00189 * 180.02562 * 10 8 7 12 12 C 1.36140 * 126.26172 * 359.68874 * 11 10 8 13 13 C 1.39730 * 107.86132 * 179.90486 * 12 11 10 14 14 C 1.50707 * 125.78341 * 180.12038 * 13 12 11 15 15 N 1.30829 * 108.44338 * 0.36895 * 13 12 11 16 16 N 1.35809 * 126.26658 * 180.02562 * 11 10 8 17 17 C 1.46500 * 126.09102 * 359.95702 * 16 11 10 18 18 C 1.50698 * 109.47081 * 90.00361 * 17 16 11 19 19 H 1.07998 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00251 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99638 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00248 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46985 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47278 * 119.99606 * 22 20 18 25 25 H 1.48498 * 109.47105 * 239.99883 * 22 20 18 26 26 C 1.39962 * 118.80255 * 359.97438 * 7 5 4 27 27 C 1.38310 * 119.40425 * 90.00190 * 3 2 1 28 28 C 1.50703 * 120.26848 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.46488 * 299.99762 * 1 2 3 30 30 H 1.09000 * 109.47185 * 59.99505 * 1 2 3 31 31 H 1.08997 * 109.46813 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46902 * 240.00239 * 2 1 3 33 33 H 1.09000 * 109.47185 * 120.00495 * 2 1 3 34 34 H 0.96696 * 114.00603 * 270.02255 * 6 5 4 35 35 H 0.97005 * 119.99484 * 0.02562 * 10 8 7 36 36 H 1.08002 * 126.07120 * 0.02562 * 12 11 10 37 37 H 1.09000 * 109.46873 * 270.26787 * 14 13 12 38 38 H 1.09006 * 109.46775 * 30.26410 * 14 13 12 39 39 H 1.08996 * 109.47285 * 150.25865 * 14 13 12 40 40 H 1.08989 * 109.47331 * 210.00581 * 17 16 11 41 41 H 1.09004 * 109.46886 * 330.00513 * 17 16 11 42 42 H 0.96998 * 119.99880 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.82765 * 180.02562 * 26 7 5 44 44 H 1.09002 * 109.47152 * 269.72309 * 28 27 3 45 45 H 1.09001 * 109.46980 * 149.72410 * 28 27 3 46 46 H 1.09004 * 109.47113 * 29.72391 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2431 2.0333 -1.1492 5 6 2.6881 3.2770 -1.2045 6 8 2.8955 3.8648 -2.4067 7 6 2.9472 3.9915 -0.0247 8 6 3.4442 5.3790 -0.0812 9 8 3.6335 5.9137 -1.1568 10 7 3.6886 6.0542 1.0593 11 6 4.1578 7.3657 1.0060 12 6 4.4180 8.0826 -0.1217 13 6 4.8666 9.3471 0.2683 14 6 5.2661 10.4653 -0.6597 15 7 4.8862 9.3943 1.5756 16 7 4.4451 8.1600 2.0695 17 6 4.3164 7.7915 3.4815 18 6 5.6097 7.1857 3.9625 19 1 6.4439 7.0849 3.2841 20 6 5.7276 6.7593 5.2684 21 7 4.7116 6.8817 6.0944 22 14 7.3310 6.0090 5.8649 23 1 8.3112 5.9850 4.7496 24 1 7.8724 6.8226 6.9830 25 1 7.0837 4.6226 6.3359 26 6 2.7255 3.3637 1.2063 27 6 2.2588 2.0610 1.2049 28 6 2.0057 1.3433 2.5057 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.7873 3.7377 -2.7581 35 1 3.5379 5.6275 1.9173 36 1 4.2971 7.7361 -1.1375 37 1 6.3297 10.3879 -0.8851 38 1 4.6927 10.3928 -1.5839 39 1 5.0647 11.4238 -0.1815 40 1 4.0907 8.6808 4.0699 41 1 3.5108 7.0662 3.5957 42 1 4.7943 6.5814 7.0130 43 1 2.9136 3.8832 2.1344 44 1 0.9771 1.5165 2.8221 45 1 2.6885 1.7201 3.2673 46 1 2.1686 0.2743 2.3686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362137592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:12 Heat of formation + Delta-G solvation = 7.449560 kcal Electronic energy + Delta-G solvation = -29898.388054 eV Core-core repulsion = 25789.061357 eV Total energy + Delta-G solvation = -4109.326697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.59894 -41.90019 -40.26902 -38.56716 -36.34811 -35.67986 -35.02210 -34.42378 -33.82290 -31.87370 -30.71286 -29.70030 -27.82572 -27.79129 -26.29463 -24.88418 -24.17906 -23.21786 -22.32407 -21.35076 -20.77916 -19.74905 -18.93723 -18.61238 -18.26952 -17.61327 -17.04703 -16.71217 -16.47325 -16.24137 -15.93774 -15.67167 -15.47096 -15.05297 -14.77536 -14.63148 -14.46062 -14.27436 -14.04442 -13.96072 -13.62047 -13.53656 -13.40757 -13.18529 -13.14625 -12.96797 -12.89934 -12.72495 -12.67432 -12.33727 -12.27386 -11.98871 -11.77561 -11.70466 -11.57790 -11.13317 -11.01084 -10.77309 -10.56140 -9.79807 -9.64967 -9.10513 -8.37619 -6.55212 -0.67595 -0.06760 0.86279 1.22560 1.34074 1.38199 1.49597 1.64716 1.99797 2.10299 2.32246 2.36543 2.58954 2.92550 3.17773 3.46303 3.49741 3.68627 3.79928 3.94503 4.19211 4.21920 4.33209 4.41497 4.50140 4.57127 4.63574 4.68285 4.72751 4.79296 4.82826 4.86840 4.89186 4.94412 5.00581 5.07955 5.14667 5.19129 5.21489 5.24643 5.31340 5.50088 5.53993 5.75001 5.93240 6.05056 6.20361 6.47320 6.54909 6.72765 6.82632 6.97809 7.16964 8.69100 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008562 B = 0.003821 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.527068 B = 7325.998326 C = 9974.665965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C 0.178 3.822 4 N -0.517 5.517 5 C 0.363 3.637 6 O -0.474 6.474 7 C -0.216 4.216 8 C 0.571 3.429 9 O -0.515 6.515 10 N -0.633 5.633 11 C 0.298 3.702 12 C -0.303 4.303 13 C 0.059 3.941 14 C -0.061 4.061 15 N -0.326 5.326 16 N -0.368 5.368 17 C 0.272 3.728 18 C -0.557 4.557 19 H 0.046 0.954 20 C 0.031 3.969 21 N -0.911 5.911 22 Si 0.967 3.033 23 H -0.278 1.278 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.029 4.029 27 C -0.144 4.144 28 C -0.114 4.114 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.418 0.582 35 H 0.418 0.582 36 H 0.169 0.831 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.275 0.725 43 H 0.154 0.846 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 -15.583 -9.496 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C 0.040 3.960 4 N -0.236 5.236 5 C 0.182 3.818 6 O -0.284 6.284 7 C -0.223 4.223 8 C 0.360 3.640 9 O -0.390 6.390 10 N -0.282 5.282 11 C 0.076 3.924 12 C -0.334 4.334 13 C -0.107 4.107 14 C -0.119 4.119 15 N -0.151 5.151 16 N -0.154 5.154 17 C 0.154 3.846 18 C -0.595 4.595 19 H 0.064 0.936 20 C -0.171 4.171 21 N -0.549 5.549 22 Si 0.791 3.209 23 H -0.203 1.203 24 H -0.201 1.201 25 H -0.186 1.186 26 C -0.055 4.055 27 C -0.146 4.146 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.280 0.720 35 H 0.257 0.743 36 H 0.186 0.814 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.171 0.829 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.870 -14.810 -9.691 18.986 hybrid contribution 1.166 -0.125 0.979 1.527 sum -5.704 -14.935 -8.713 18.207 Atomic orbital electron populations 1.21697 0.92969 1.03540 1.01875 1.20828 0.97285 0.88078 1.05571 1.21779 0.90547 0.97514 0.86195 1.67232 1.15758 1.09271 1.31335 1.19125 0.91119 0.86675 0.84841 1.84662 1.38613 1.73204 1.31889 1.20697 1.11148 0.94688 0.95794 1.18094 0.77362 0.85793 0.82766 1.90708 1.50767 1.68790 1.28721 1.42689 1.64163 1.10189 1.11115 1.18327 0.99838 0.84724 0.89493 1.21494 1.18515 0.94904 0.98518 1.22879 0.98766 0.97183 0.91850 1.20233 1.02534 0.92927 0.96203 1.77286 1.24289 1.01600 1.11923 1.49334 1.50826 1.08670 1.06597 1.19240 0.97670 0.95904 0.71835 1.21421 0.98555 1.42473 0.97045 0.93567 1.25641 1.00324 0.95358 0.95782 1.69991 1.32113 1.46391 1.06423 0.85372 0.78713 0.78783 0.78000 1.20337 1.20142 1.18604 1.21932 0.92165 0.94694 0.96702 1.20965 1.01032 0.94150 0.98404 1.20976 1.03712 1.01276 0.91118 0.91947 0.94057 0.89488 0.89483 0.86520 0.71962 0.74331 0.81362 0.89596 0.88624 0.90581 0.95376 0.93510 0.91548 0.82864 0.89117 0.90619 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.90 71.98 0.71 -0.85 16 2 C -0.08 -0.96 5.81 29.85 0.17 -0.78 16 3 C 0.18 3.47 6.03 42.56 0.26 3.72 16 4 N -0.52 -13.00 10.28 -296.07 -3.04 -16.04 16 5 C 0.36 10.11 7.77 85.15 0.66 10.78 16 6 O -0.47 -13.13 11.66 -66.34 -0.77 -13.91 16 7 C -0.22 -6.13 5.90 -19.91 -0.12 -6.25 16 8 C 0.57 19.63 7.73 86.68 0.67 20.30 16 9 O -0.51 -19.56 12.32 16.78 0.21 -19.35 16 10 N -0.63 -23.29 5.37 -311.09 -1.67 -24.96 16 11 C 0.30 13.02 7.68 131.18 1.01 14.03 16 12 C -0.30 -12.65 9.58 22.14 0.21 -12.44 16 13 C 0.06 2.38 7.20 43.07 0.31 2.69 16 14 C -0.06 -1.72 10.44 71.24 0.74 -0.98 16 15 N -0.33 -15.61 12.56 -47.47 -0.60 -16.21 16 16 N -0.37 -17.88 3.62 -348.33 -1.26 -19.14 16 17 C 0.27 13.98 6.02 85.63 0.52 14.50 16 18 C -0.56 -30.16 9.39 25.60 0.24 -29.92 16 19 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 20 C 0.03 1.61 5.46 84.66 0.46 2.07 16 21 N -0.91 -48.64 13.29 21.45 0.28 -48.36 16 22 Si 0.97 41.19 29.54 68.60 2.03 43.21 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C -0.03 -0.68 9.31 22.72 0.21 -0.47 16 27 C -0.14 -2.66 5.89 -19.81 -0.12 -2.78 16 28 C -0.11 -1.33 9.61 71.24 0.68 -0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.12 0.77 5.90 -2.39 -0.01 0.76 16 34 H 0.42 8.19 9.06 -74.06 -0.67 7.52 16 35 H 0.42 14.11 6.09 -92.70 -0.56 13.54 16 36 H 0.17 6.79 5.83 -2.91 -0.02 6.77 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 2.31 7.52 -2.39 -0.02 2.29 16 42 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 43 H 0.15 3.25 6.51 -2.91 -0.02 3.24 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 46 H 0.10 0.70 5.92 -2.38 -0.01 0.68 16 Total: -1.00 -72.44 388.00 1.62 -70.82 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.18 Total: 30.94 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.63 Total: 13.00 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -6.29 Total: -124.70 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.57 Total: -33.26 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -72.44 1.62 -70.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362137592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.268 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds