Wall clock time and date at job start Wed Apr 1 2020 03:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47213 * 2 1 4 4 N 1.29914 * 124.85092 * 89.99759 * 3 2 1 5 5 C 1.36073 * 108.80451 * 179.97438 * 4 3 2 6 6 C 1.39560 * 133.73672 * 180.34324 * 5 4 3 7 7 C 1.38269 * 119.67528 * 180.15362 * 6 5 4 8 8 N 1.40125 * 119.86439 * 179.73377 * 7 6 5 9 9 C 1.34777 * 119.99492 * 211.47417 * 8 7 6 10 10 O 1.21582 * 120.00418 * 353.82845 * 9 8 7 11 11 N 1.34779 * 119.99646 * 173.83626 * 9 8 7 12 12 C 1.46957 * 120.59583 * 186.31411 * 11 9 8 13 13 C 1.53375 * 108.63726 * 235.24716 * 12 11 9 14 14 N 1.46961 * 108.63147 * 310.57433 * 13 12 11 15 15 C 1.36939 * 120.59411 * 235.20104 * 14 13 12 16 16 H 1.08001 * 120.00001 * 136.03576 * 15 14 13 17 17 C 1.38808 * 119.99837 * 315.76682 * 15 14 13 18 18 N 1.31614 * 120.00189 * 327.48342 * 17 15 14 19 19 Si 1.86806 * 119.99781 * 147.49177 * 17 15 14 20 20 H 1.48497 * 109.47091 * 59.99775 * 19 17 15 21 21 H 1.48504 * 109.46836 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47164 * 299.99388 * 19 17 15 23 23 C 1.46970 * 118.81309 * 55.47921 * 14 13 12 24 24 C 1.46967 * 120.59293 * 6.33580 * 11 9 8 25 25 C 1.39298 * 120.26922 * 359.46425 * 7 6 5 26 26 C 1.37818 * 120.40693 * 0.27187 * 25 7 6 27 27 C 1.38695 * 119.97257 * 359.97438 * 26 25 7 28 28 O 1.34211 * 124.84937 * 269.95713 * 3 2 1 29 29 H 1.09000 * 109.47446 * 300.00648 * 1 2 3 30 30 H 1.09007 * 109.46688 * 60.00300 * 1 2 3 31 31 H 1.08998 * 109.47278 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47531 * 239.99524 * 2 1 3 33 33 H 1.08998 * 109.46905 * 119.99578 * 2 1 3 34 34 H 1.07997 * 120.16019 * 359.91387 * 6 5 4 35 35 H 0.96993 * 119.99705 * 31.47221 * 8 7 6 36 36 H 1.09009 * 109.61327 * 115.49899 * 12 11 9 37 37 H 1.09001 * 109.61317 * 354.98960 * 12 11 9 38 38 H 1.09003 * 109.60754 * 190.83204 * 13 12 11 39 39 H 1.08997 * 109.74755 * 70.40469 * 13 12 11 40 40 H 0.96993 * 120.00475 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.61112 * 64.26505 * 23 14 13 42 42 H 1.09003 * 109.60552 * 184.77515 * 23 14 13 43 43 H 1.09006 * 109.60652 * 244.50251 * 24 11 9 44 44 H 1.09000 * 109.60910 * 4.83328 * 24 11 9 45 45 H 1.07996 * 119.79119 * 180.29240 * 25 7 6 46 46 H 1.08008 * 120.01473 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2798 2.1208 1.0661 5 6 2.7163 3.3535 0.6900 6 6 3.1242 4.4884 1.3924 7 6 3.5186 5.6177 0.6988 8 7 3.9236 6.7613 1.4000 9 6 3.7057 7.9844 0.8776 10 8 3.2610 8.0940 -0.2487 11 7 3.9808 9.0860 1.6037 12 6 3.6212 10.4204 1.1039 13 6 4.8818 11.2939 1.0877 14 7 5.5472 11.1822 2.3932 15 6 5.8276 12.3016 3.1306 16 1 5.6321 12.3115 4.1927 17 6 6.3681 13.4215 2.5138 18 7 7.1775 13.2803 1.4857 19 14 5.9469 15.1291 3.1433 20 1 6.3786 15.2554 4.5586 21 1 6.6476 16.1470 2.3198 22 1 4.4801 15.3424 3.0523 23 6 5.9120 9.8482 2.8905 24 6 4.6464 8.9744 2.9093 25 6 3.5203 5.6213 -0.6942 26 6 3.1241 4.5027 -1.3951 27 6 2.7211 3.3643 -0.7130 28 8 2.2888 2.1436 -1.1014 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8898 33 1 1.8933 -0.5138 0.8900 34 1 3.1281 4.4859 2.4723 35 1 4.3607 6.6725 2.2613 36 1 2.8744 10.8678 1.7600 37 1 3.2209 10.3370 0.0935 38 1 4.6049 12.3324 0.9058 39 1 5.5564 10.9523 0.3027 40 1 7.5556 14.0628 1.0549 41 1 6.6573 9.4032 2.2314 42 1 6.3157 9.9318 3.8996 43 1 3.9726 9.3188 3.6939 44 1 4.9204 7.9354 3.0925 45 1 3.8344 6.5059 -1.2281 46 1 3.1283 4.5123 -2.4751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465677689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:16 Heat of formation + Delta-G solvation = 51.161857 kcal Electronic energy + Delta-G solvation = -29278.694782 eV Core-core repulsion = 25171.263593 eV Total energy + Delta-G solvation = -4107.431189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.37709 -40.62980 -38.33917 -36.81577 -35.25150 -34.75043 -34.00263 -33.41484 -31.34044 -30.69277 -30.04670 -28.78173 -26.87103 -25.09064 -23.97833 -23.39620 -22.61785 -22.52741 -21.44531 -20.99561 -19.44047 -18.72318 -18.09037 -17.30774 -16.92814 -16.51986 -16.17968 -15.44992 -15.36258 -14.87225 -14.70624 -14.50371 -14.19554 -14.06071 -13.94312 -13.69465 -13.62281 -13.36671 -13.26951 -13.15974 -12.83594 -12.43162 -12.23050 -11.89708 -11.78559 -11.65429 -11.57460 -11.44913 -10.96280 -10.76822 -10.67404 -10.65421 -10.41540 -10.34044 -10.19410 -9.94768 -9.71931 -8.60510 -8.58874 -8.40247 -8.04878 -6.67028 -5.93555 -3.49986 0.54062 1.06243 2.24102 2.29293 2.61160 3.16085 3.30309 3.38425 3.40912 3.54142 3.61798 3.90598 4.35591 4.39122 4.52467 4.63562 4.70295 4.89082 5.04795 5.08175 5.11696 5.13722 5.16580 5.28338 5.35518 5.56256 5.59248 5.66144 5.67342 5.72976 5.84581 5.89866 6.02009 6.03190 6.10546 6.18368 6.21167 6.30817 6.34503 6.63246 6.73440 6.75090 6.93095 7.06969 7.19494 7.43978 7.76481 7.97906 8.40293 8.61069 9.01801 9.63592 10.34250 11.03201 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.038711 B = 0.001905 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.139999 B =14694.010033 C =14962.200742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.031 4.031 3 C 0.244 3.756 4 N -0.479 5.479 5 C 0.042 3.958 6 C -0.106 4.106 7 C 0.183 3.817 8 N -0.687 5.687 9 C 0.705 3.295 10 O -0.583 6.583 11 N -0.606 5.606 12 C 0.107 3.893 13 C 0.156 3.844 14 N -0.582 5.582 15 C -0.291 4.291 16 H 0.059 0.941 17 C 0.033 3.967 18 N -0.864 5.864 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.131 3.869 24 C 0.092 3.908 25 C -0.093 4.093 26 C -0.075 4.075 27 C -0.013 4.013 28 O -0.215 6.215 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.409 0.591 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.257 0.743 41 H 0.023 0.977 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.168 0.832 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 -23.637 -2.442 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.069 4.069 3 C 0.032 3.968 4 N -0.209 5.209 5 C -0.070 4.070 6 C -0.129 4.129 7 C 0.086 3.914 8 N -0.336 5.336 9 C 0.408 3.592 10 O -0.461 6.461 11 N -0.341 5.341 12 C -0.017 4.017 13 C 0.029 3.971 14 N -0.305 5.305 15 C -0.420 4.420 16 H 0.077 0.923 17 C -0.172 4.172 18 N -0.502 5.502 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.004 3.996 24 C -0.033 4.033 25 C -0.113 4.113 26 C -0.095 4.095 27 C -0.063 4.063 28 O -0.106 6.106 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.248 0.752 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.185 0.815 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.064 -23.479 -2.710 25.688 hybrid contribution 0.260 1.168 0.088 1.200 sum -9.804 -22.311 -2.622 24.510 Atomic orbital electron populations 1.21793 0.92738 1.03168 1.03229 1.20196 0.97138 0.84064 1.05534 1.26423 0.95485 0.96361 0.78491 1.70581 1.18395 1.02992 1.28976 1.19357 1.03586 0.93083 0.90998 1.19722 1.02784 0.90393 0.99980 1.17222 0.97229 0.85875 0.91102 1.42830 1.63072 1.03406 1.24318 1.15804 0.78912 0.80110 0.84405 1.90830 1.52674 1.85130 1.17483 1.47260 1.61033 1.05473 1.20368 1.22376 0.99541 0.80236 0.99555 1.21156 0.90079 0.97546 0.88319 1.43818 1.66320 1.00768 1.19546 1.18781 1.39596 0.90600 0.93016 0.92331 1.25327 0.94243 0.99700 0.97883 1.70265 1.25691 1.29686 1.24517 0.86670 0.78775 0.84445 0.78708 1.20416 1.21651 1.20533 1.21423 0.91745 0.87519 0.98945 1.22459 0.97238 0.99312 0.84285 1.21502 0.98857 0.98263 0.92670 1.19804 1.00933 0.88367 1.00351 1.20321 1.05149 0.86339 0.94486 1.84466 1.68058 1.22069 1.36033 0.91590 0.91975 0.90658 0.88516 0.87286 0.84488 0.75232 0.91783 0.89763 0.91043 0.95439 0.93302 0.95889 0.91224 0.91175 0.92041 0.81505 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.39 16 2 C -0.03 -0.18 6.56 -27.88 -0.18 -0.36 16 3 C 0.24 2.61 7.49 -13.09 -0.10 2.51 16 4 N -0.48 -6.24 11.34 -8.71 -0.10 -6.34 16 5 C 0.04 0.57 7.23 -84.71 -0.61 -0.04 16 6 C -0.11 -1.34 10.00 -39.08 -0.39 -1.73 16 7 C 0.18 2.46 6.36 -83.66 -0.53 1.93 16 8 N -0.69 -9.15 5.26 -14.22 -0.07 -9.23 16 9 C 0.71 11.75 8.16 -86.92 -0.71 11.04 16 10 O -0.58 -11.12 12.93 5.29 0.07 -11.05 16 11 N -0.61 -10.27 2.95 -177.94 -0.52 -10.79 16 12 C 0.11 1.97 6.60 -3.60 -0.02 1.95 16 13 C 0.16 3.45 5.98 -3.60 -0.02 3.43 16 14 N -0.58 -13.61 2.85 -171.76 -0.49 -14.10 16 15 C -0.29 -7.56 9.22 -15.06 -0.14 -7.70 16 16 H 0.06 1.52 8.01 -52.49 -0.42 1.10 16 17 C 0.03 0.89 4.56 -17.43 -0.08 0.81 16 18 N -0.86 -24.38 13.37 55.49 0.74 -23.64 16 19 Si 0.89 20.48 29.66 -169.99 -5.04 15.44 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.13 2.51 6.70 -3.37 -0.02 2.49 16 24 C 0.09 1.39 6.57 -3.37 -0.02 1.37 16 25 C -0.09 -1.27 8.72 -39.34 -0.34 -1.62 16 26 C -0.08 -0.93 10.05 -39.57 -0.40 -1.32 16 27 C -0.01 -0.17 7.43 -38.63 -0.29 -0.46 16 28 O -0.21 -2.62 10.78 3.43 0.04 -2.58 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.41 4.39 6.29 -40.82 -0.26 4.14 16 36 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 37 H 0.08 1.54 6.99 -51.93 -0.36 1.18 16 38 H 0.07 1.68 7.44 -51.93 -0.39 1.30 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.71 5.63 -51.93 -0.29 0.41 16 45 H 0.17 2.51 5.89 -52.49 -0.31 2.20 16 46 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -32.46 377.85 -9.41 -41.86 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.23 Total: 2.83 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -3.49 Total: 11.91 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.44 Total: -64.10 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.11 Total: -13.63 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.04 Total: 15.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.46 -9.41 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465677689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.025 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds