Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46807 * 2 1 4 4 C 1.52996 * 109.46808 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46929 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72561 * 6 5 4 9 9 C 1.46506 * 119.99968 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.63678 * 34.29213 * 9 8 6 11 11 C 1.54328 * 110.71741 * 271.15459 * 9 8 6 12 12 N 1.47019 * 107.26776 * 219.44173 * 11 9 8 13 13 C 1.34778 * 125.64536 * 178.97491 * 12 11 9 14 14 O 1.21288 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00073 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47189 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99804 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00481 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99576 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99636 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47043 * 89.99719 * 21 19 17 23 23 H 1.48501 * 109.47126 * 209.99462 * 21 19 17 24 24 H 1.48498 * 109.47003 * 329.99681 * 21 19 17 25 25 C 1.47418 * 108.70650 * 358.94061 * 12 11 9 26 26 C 1.55121 * 104.94257 * 24.00467 * 25 12 11 27 27 H 1.09007 * 111.16627 * 205.13333 * 26 25 12 28 28 O 1.42898 * 110.94224 * 81.21286 * 26 25 12 29 29 H 1.09005 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46626 * 299.99306 * 1 2 3 31 31 H 1.08994 * 109.47559 * 59.99583 * 1 2 3 32 32 H 1.08996 * 109.46626 * 240.00694 * 2 1 3 33 33 H 1.08994 * 109.47559 * 120.00417 * 2 1 3 34 34 H 1.09000 * 109.46719 * 60.00443 * 3 2 1 35 35 H 1.08994 * 109.47402 * 300.00513 * 3 2 1 36 36 H 1.09000 * 109.47441 * 60.00491 * 4 3 2 37 37 H 1.09002 * 109.47087 * 299.99937 * 4 3 2 38 38 H 1.09001 * 109.47671 * 60.00109 * 5 4 3 39 39 H 1.08998 * 109.47454 * 300.00107 * 5 4 3 40 40 H 0.96998 * 120.00525 * 359.97438 * 8 6 5 41 41 H 1.08996 * 109.88044 * 338.86378 * 11 9 8 42 42 H 1.09000 * 109.88106 * 100.02584 * 11 9 8 43 43 H 1.09005 * 109.46876 * 300.00061 * 15 13 12 44 44 H 1.08995 * 109.47596 * 60.00072 * 15 13 12 45 45 H 0.97006 * 120.00423 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36812 * 142.96263 * 25 12 11 47 47 H 1.08995 * 110.36901 * 265.17833 * 25 12 11 48 48 H 0.96700 * 113.99640 * 67.95835 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.5870 2.8852 0.0000 7 8 6.1934 1.8349 0.0000 8 7 6.2608 4.0524 -0.0051 9 6 7.7258 4.0525 -0.0056 10 1 8.1098 3.2074 -0.5770 11 6 8.2723 4.0294 1.4375 12 7 9.4408 4.9208 1.4759 13 6 10.1889 5.1885 2.5646 14 8 9.9167 4.6745 3.6289 15 6 11.3637 6.1265 2.4594 16 16 12.1603 6.2797 4.0775 17 6 13.4601 7.3987 3.6739 18 1 13.5625 7.7657 2.6634 19 6 14.3532 7.8076 4.6546 20 7 14.2289 7.3600 5.8861 21 14 15.7309 8.9945 4.2268 22 1 15.2611 10.3895 4.4231 23 1 16.8979 8.7366 5.1082 24 1 16.1287 8.8009 2.8093 25 6 9.6591 5.4727 0.1265 26 6 8.2745 5.3903 -0.5681 27 1 8.3801 5.3443 -1.6521 28 8 7.4436 6.4871 -0.1826 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9330 0.9290 -0.8909 37 1 3.9337 0.9286 0.8891 38 1 3.7170 3.3985 0.8904 39 1 3.7162 3.3995 -0.8895 40 1 5.7758 4.8924 -0.0091 41 1 7.5095 4.3879 2.1285 42 1 8.5705 3.0156 1.7047 43 1 12.0798 5.7325 1.7381 44 1 11.0180 7.1064 2.1301 45 1 14.8528 7.6461 6.5715 46 1 9.9918 6.5088 0.1896 47 1 10.3902 4.8726 -0.4151 48 1 7.7468 7.3446 -0.5111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683353432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = -139.150775 kcal Electronic energy + Delta-G solvation = -27142.281306 eV Core-core repulsion = 23129.748742 eV Total energy + Delta-G solvation = -4012.532564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62978 -39.46828 -37.95263 -36.36013 -35.45128 -34.40306 -32.63565 -32.44520 -30.67804 -29.19585 -28.37173 -27.11136 -25.50242 -23.82211 -22.87942 -21.43382 -21.13926 -20.58613 -19.47790 -18.12025 -17.67718 -17.26093 -16.74788 -16.44964 -16.20921 -15.65499 -15.33970 -15.05097 -14.82053 -14.59154 -14.47791 -14.05213 -13.95055 -13.72852 -13.64570 -13.51538 -13.08794 -12.95144 -12.58494 -12.38748 -12.31332 -12.09795 -12.02230 -11.76020 -11.50665 -11.38867 -11.31131 -11.19407 -11.07994 -11.03954 -10.88289 -10.78517 -10.68145 -10.10620 -9.83833 -9.52673 -9.30485 -9.08211 -8.53187 -8.24824 -6.51981 -6.22923 -3.93980 2.35185 2.63016 2.98743 3.06525 3.20859 3.24990 3.29062 3.56946 3.60715 4.08162 4.17763 4.24998 4.34073 4.42415 4.52532 4.60047 4.77075 4.80062 4.91612 4.99391 5.02947 5.08035 5.12129 5.15996 5.19926 5.29526 5.36116 5.39302 5.41204 5.50875 5.56722 5.62216 5.66665 5.70122 5.81317 5.84473 5.87215 5.94058 6.02908 6.08394 6.12990 6.35664 7.15620 7.24182 7.57254 7.60388 7.95895 8.33312 8.53414 9.22042 10.84484 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.001688 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.375637 B =16583.479977 C =17193.397163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.140 4.140 6 C 0.511 3.489 7 O -0.539 6.539 8 N -0.715 5.715 9 C 0.144 3.856 10 H 0.115 0.885 11 C 0.103 3.897 12 N -0.620 5.620 13 C 0.549 3.451 14 O -0.512 6.512 15 C -0.146 4.146 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.072 3.928 26 C 0.085 3.915 27 H 0.088 0.912 28 O -0.555 6.555 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.491 -6.254 -19.750 31.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.144 4.144 5 C -0.180 4.180 6 C 0.298 3.702 7 O -0.415 6.415 8 N -0.368 5.368 9 C 0.038 3.962 10 H 0.133 0.867 11 C -0.022 4.022 12 N -0.358 5.358 13 C 0.337 3.663 14 O -0.386 6.386 15 C -0.296 4.296 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.053 4.053 26 C 0.024 3.976 27 H 0.105 0.895 28 O -0.361 6.361 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.248 0.752 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -23.672 -8.241 -17.595 30.624 hybrid contribution 1.415 2.324 -1.771 3.247 sum -22.256 -5.917 -19.366 30.089 Atomic orbital electron populations 1.21781 0.95941 1.01591 1.01734 1.21527 0.95725 0.96845 1.02265 1.21640 0.95056 0.97049 1.02066 1.21369 0.94733 0.94519 1.03737 1.21694 0.91383 1.00352 1.04533 1.20878 0.90530 0.83464 0.75308 1.90728 1.70474 1.31263 1.49059 1.45805 1.06058 1.09414 1.75517 1.22051 0.81123 0.96762 0.96255 0.86699 1.22220 0.88599 0.95022 0.96326 1.48307 1.30639 1.47887 1.08948 1.20047 0.82681 0.81564 0.81996 1.90724 1.69727 1.51140 1.26966 1.23497 0.97699 1.00151 1.08262 1.85458 1.33587 1.60856 1.03379 1.22849 1.15393 1.31651 0.98535 0.90956 1.24990 0.97622 0.96471 0.94445 1.70016 1.36620 1.42248 1.01308 0.86167 0.80467 0.80425 0.78425 1.20266 1.20720 1.19707 1.23043 0.97122 1.00947 0.84172 1.23261 0.89511 0.87026 0.97762 0.89453 1.86369 1.52604 1.17936 1.79212 0.92828 0.92753 0.92837 0.91987 0.91881 0.91877 0.91998 0.91207 0.91062 0.88719 0.88875 0.75214 0.90972 0.90855 0.89306 0.89358 0.92147 0.89403 0.90115 0.76296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.73 5.93 -26.72 -0.16 -0.89 16 3 C -0.12 -0.67 5.21 -26.73 -0.14 -0.81 16 4 C -0.11 -0.76 4.50 -26.73 -0.12 -0.88 16 5 C -0.14 -0.89 5.70 -27.88 -0.16 -1.05 16 6 C 0.51 4.97 7.83 -10.98 -0.09 4.89 16 7 O -0.54 -7.38 15.67 5.56 0.09 -7.30 16 8 N -0.71 -6.09 5.08 -52.02 -0.26 -6.35 16 9 C 0.14 1.39 3.15 -66.09 -0.21 1.18 16 10 H 0.12 1.13 7.62 -51.93 -0.40 0.73 16 11 C 0.10 1.40 6.62 -3.06 -0.02 1.38 16 12 N -0.62 -9.12 3.33 -170.39 -0.57 -9.69 16 13 C 0.55 10.88 7.87 -10.99 -0.09 10.79 16 14 O -0.51 -12.38 16.19 5.55 0.09 -12.29 16 15 C -0.15 -2.98 5.16 36.00 0.19 -2.79 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 21 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.07 0.69 6.43 -2.42 -0.02 0.67 16 26 C 0.08 0.61 4.31 -24.47 -0.11 0.50 16 27 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 28 O -0.55 -3.90 12.23 -35.23 -0.43 -4.33 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.41 2.85 7.58 -40.82 -0.31 2.54 16 41 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 44 H 0.09 1.65 7.85 -51.92 -0.41 1.24 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.09 0.78 7.48 -51.93 -0.39 0.39 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.39 1.29 9.12 45.56 0.42 1.70 16 LS Contribution 410.61 15.07 6.19 6.19 Total: -1.00 -37.83 410.61 -9.13 -46.96 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.38 Total: 0.16 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.35 Total: -0.33 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.10 Total: -41.47 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.25 Total: -23.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.83 -9.13 -46.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683353432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.191 kcal (2) G-P(sol) polarization free energy of solvation -37.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds