Wall clock time and date at job start Wed Apr 1 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46807 * 2 1 4 4 C 1.52996 * 109.46808 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46929 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72561 * 6 5 4 9 9 C 1.46506 * 119.99968 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.63678 * 34.29213 * 9 8 6 11 11 C 1.54328 * 110.71741 * 271.15459 * 9 8 6 12 12 N 1.47019 * 107.26776 * 219.44173 * 11 9 8 13 13 C 1.34778 * 125.64536 * 178.97491 * 12 11 9 14 14 O 1.21288 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00073 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47189 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99804 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00481 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99576 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99636 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47043 * 89.99719 * 21 19 17 23 23 H 1.48501 * 109.47126 * 209.99462 * 21 19 17 24 24 H 1.48498 * 109.47003 * 329.99681 * 21 19 17 25 25 C 1.47418 * 108.70650 * 358.94061 * 12 11 9 26 26 C 1.55121 * 104.94257 * 24.00467 * 25 12 11 27 27 H 1.09007 * 111.16627 * 205.13333 * 26 25 12 28 28 O 1.42898 * 110.94224 * 81.21286 * 26 25 12 29 29 H 1.09005 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46626 * 299.99306 * 1 2 3 31 31 H 1.08994 * 109.47559 * 59.99583 * 1 2 3 32 32 H 1.08996 * 109.46626 * 240.00694 * 2 1 3 33 33 H 1.08994 * 109.47559 * 120.00417 * 2 1 3 34 34 H 1.09000 * 109.46719 * 60.00443 * 3 2 1 35 35 H 1.08994 * 109.47402 * 300.00513 * 3 2 1 36 36 H 1.09000 * 109.47441 * 60.00491 * 4 3 2 37 37 H 1.09002 * 109.47087 * 299.99937 * 4 3 2 38 38 H 1.09001 * 109.47671 * 60.00109 * 5 4 3 39 39 H 1.08998 * 109.47454 * 300.00107 * 5 4 3 40 40 H 0.96998 * 120.00525 * 359.97438 * 8 6 5 41 41 H 1.08996 * 109.88044 * 338.86378 * 11 9 8 42 42 H 1.09000 * 109.88106 * 100.02584 * 11 9 8 43 43 H 1.09005 * 109.46876 * 300.00061 * 15 13 12 44 44 H 1.08995 * 109.47596 * 60.00072 * 15 13 12 45 45 H 0.97006 * 120.00423 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36812 * 142.96263 * 25 12 11 47 47 H 1.08995 * 110.36901 * 265.17833 * 25 12 11 48 48 H 0.96700 * 113.99640 * 67.95835 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.5870 2.8852 0.0000 7 8 6.1934 1.8349 0.0000 8 7 6.2608 4.0524 -0.0051 9 6 7.7258 4.0525 -0.0056 10 1 8.1098 3.2074 -0.5770 11 6 8.2723 4.0294 1.4375 12 7 9.4408 4.9208 1.4759 13 6 10.1889 5.1885 2.5646 14 8 9.9167 4.6745 3.6289 15 6 11.3637 6.1265 2.4594 16 16 12.1603 6.2797 4.0775 17 6 13.4601 7.3987 3.6739 18 1 13.5625 7.7657 2.6634 19 6 14.3532 7.8076 4.6546 20 7 14.2289 7.3600 5.8861 21 14 15.7309 8.9945 4.2268 22 1 15.2611 10.3895 4.4231 23 1 16.8979 8.7366 5.1082 24 1 16.1287 8.8009 2.8093 25 6 9.6591 5.4727 0.1265 26 6 8.2745 5.3903 -0.5681 27 1 8.3801 5.3443 -1.6521 28 8 7.4436 6.4871 -0.1826 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9330 0.9290 -0.8909 37 1 3.9337 0.9286 0.8891 38 1 3.7170 3.3985 0.8904 39 1 3.7162 3.3995 -0.8895 40 1 5.7758 4.8924 -0.0091 41 1 7.5095 4.3879 2.1285 42 1 8.5705 3.0156 1.7047 43 1 12.0798 5.7325 1.7381 44 1 11.0180 7.1064 2.1301 45 1 14.8528 7.6461 6.5715 46 1 9.9918 6.5088 0.1896 47 1 10.3902 4.8726 -0.4151 48 1 7.7468 7.3446 -0.5111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001683353432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:22 Heat of formation + Delta-G solvation = -168.530532 kcal Electronic energy + Delta-G solvation = -27143.555308 eV Core-core repulsion = 23129.748742 eV Total energy + Delta-G solvation = -4013.806566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57189 -40.53322 -39.07306 -36.87072 -36.28562 -35.33917 -34.59283 -33.20962 -31.93063 -30.25530 -29.32427 -27.89394 -27.58577 -24.80504 -23.49530 -22.02817 -21.79713 -21.36614 -20.77041 -19.72444 -18.62193 -18.32379 -17.84581 -17.22773 -17.00891 -16.89137 -16.78859 -16.38415 -15.96888 -15.79800 -15.52987 -15.19468 -14.85730 -14.55329 -14.47888 -14.36722 -14.08831 -14.01044 -13.90754 -13.49040 -13.37291 -13.15989 -12.89435 -12.83426 -12.65662 -12.59406 -12.58966 -12.28380 -11.88924 -11.81777 -11.75194 -11.68175 -11.42617 -11.36321 -11.14665 -10.92838 -10.88631 -10.29171 -10.21175 -9.76812 -8.70173 -8.34985 -6.14642 1.19224 1.42572 1.43111 1.49919 1.54883 1.60852 1.89298 2.25310 2.26880 2.97530 2.99453 3.22016 3.36233 3.50602 3.75994 3.83962 3.87533 3.94821 4.04110 4.06744 4.21431 4.30190 4.33287 4.39504 4.46077 4.49912 4.53313 4.62172 4.64399 4.74600 4.76367 4.86777 4.88088 4.96731 5.06419 5.12718 5.15924 5.25006 5.35877 5.40944 5.41333 5.46168 5.54615 6.19064 6.28396 6.54777 6.84949 7.04174 7.05964 7.24773 8.74407 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.001688 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.375637 B =16583.479977 C =17193.397163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.114 4.114 4 C -0.104 4.104 5 C -0.133 4.133 6 C 0.506 3.494 7 O -0.585 6.585 8 N -0.703 5.703 9 C 0.148 3.852 10 H 0.116 0.884 11 C 0.101 3.899 12 N -0.609 5.609 13 C 0.543 3.457 14 O -0.571 6.571 15 C -0.115 4.115 16 S -0.157 6.157 17 C -0.544 4.544 18 H 0.086 0.914 19 C 0.013 3.987 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.256 1.256 25 C 0.056 3.944 26 C 0.106 3.894 27 H 0.132 0.868 28 O -0.567 6.567 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.422 0.578 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.146 -4.026 -23.428 33.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.151 4.151 4 C -0.142 4.142 5 C -0.172 4.172 6 C 0.295 3.705 7 O -0.465 6.465 8 N -0.356 5.356 9 C 0.041 3.959 10 H 0.134 0.866 11 C -0.024 4.024 12 N -0.344 5.344 13 C 0.332 3.668 14 O -0.450 6.450 15 C -0.266 4.266 16 S 0.070 5.930 17 C -0.692 4.692 18 H 0.104 0.896 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.179 1.179 25 C -0.066 4.066 26 C 0.046 3.954 27 H 0.150 0.850 28 O -0.377 6.377 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.142 0.858 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -24.367 -5.964 -21.354 32.944 hybrid contribution 1.510 1.565 -0.692 2.282 sum -22.857 -4.399 -22.046 32.059 Atomic orbital electron populations 1.21768 0.95166 1.01811 1.02140 1.21553 0.96414 0.97087 1.01672 1.21593 0.93556 0.96968 1.03006 1.21320 0.95970 0.94911 1.01994 1.21735 0.88679 1.00111 1.06676 1.21536 0.91932 0.82936 0.74100 1.90714 1.71616 1.32920 1.51226 1.45739 1.05610 1.09684 1.74599 1.21973 0.81773 0.98865 0.93264 0.86603 1.22286 0.87754 0.93223 0.99097 1.48219 1.29528 1.46933 1.09765 1.19951 0.83019 0.81332 0.82503 1.90697 1.71311 1.53429 1.29586 1.23267 0.97807 1.01833 1.03670 1.85718 1.35401 1.61664 1.10224 1.23188 1.15304 1.31445 0.99260 0.89587 1.26163 1.00545 0.98363 0.94097 1.70195 1.37982 1.44011 1.02724 0.84921 0.76371 0.77644 0.78832 1.19198 1.20477 1.17943 1.23588 0.99688 1.01930 0.81364 1.23198 0.87186 0.85588 0.99408 0.85033 1.86336 1.52629 1.18982 1.79750 0.92777 0.92588 0.92137 0.92274 0.92902 0.91326 0.90513 0.92408 0.93489 0.87165 0.85811 0.73920 0.92859 0.93423 0.87195 0.86953 0.92005 0.87881 0.87967 0.74040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.13 -1.44 5.93 30.60 0.18 -1.26 16 3 C -0.11 -1.11 5.21 30.60 0.16 -0.95 16 4 C -0.10 -1.45 4.50 30.59 0.14 -1.31 16 5 C -0.13 -1.44 5.70 29.85 0.17 -1.27 16 6 C 0.51 9.40 7.83 87.66 0.69 10.08 16 7 O -0.58 -16.33 15.67 -3.04 -0.05 -16.38 16 8 N -0.70 -10.65 5.08 -436.90 -2.22 -12.87 16 9 C 0.15 2.59 3.15 46.18 0.15 2.73 16 10 H 0.12 2.09 7.62 -2.39 -0.02 2.07 16 11 C 0.10 2.78 6.62 86.73 0.57 3.35 16 12 N -0.61 -17.44 3.33 -811.39 -2.70 -20.14 16 13 C 0.54 21.82 7.87 87.66 0.69 22.51 16 14 O -0.57 -29.11 16.19 -3.05 -0.05 -29.16 16 15 C -0.11 -4.63 5.16 71.23 0.37 -4.26 16 16 S -0.16 -8.89 20.57 -56.49 -1.16 -10.05 16 17 C -0.54 -30.91 9.50 67.95 0.65 -30.27 16 18 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 21 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 C 0.06 0.89 6.43 86.93 0.56 1.45 16 26 C 0.11 1.10 4.31 32.06 0.14 1.24 16 27 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 28 O -0.57 -5.68 12.23 -148.98 -1.82 -7.50 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.93 8.10 -2.39 -0.02 0.92 16 37 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 38 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.42 4.64 7.58 -92.71 -0.70 3.94 16 41 H 0.05 1.66 8.03 -2.39 -0.02 1.64 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 44 H 0.11 3.97 7.85 -2.40 -0.02 3.95 16 45 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 46 H 0.10 1.38 7.48 -2.39 -0.02 1.36 16 47 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.41 0.81 9.12 -74.06 -0.68 0.13 16 Total: -1.00 -88.41 410.61 -0.47 -88.88 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -0.42 Total: 15.55 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 5.63 Total: 2.59 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -4.63 Total: -89.08 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -1.92 Total: -53.04 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -88.41 -0.47 -88.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683353432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.648 kcal (2) G-P(sol) polarization free energy of solvation -88.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds