Wall clock time and date at job start Wed Apr 1 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47044 * 2 1 4 4 C 1.52997 * 109.47044 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47113 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99516 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00032 * 180.02562 * 5 4 3 8 8 C 1.46931 * 120.60493 * 0.02562 * 7 5 4 9 9 C 1.53196 * 108.77131 * 233.53550 * 8 7 5 10 10 C 1.53039 * 109.33748 * 305.41286 * 9 8 7 11 11 H 1.08995 * 109.45917 * 301.32981 * 10 9 8 12 12 N 1.46502 * 109.46078 * 181.35664 * 10 9 8 13 13 C 1.34767 * 120.00098 * 84.99742 * 12 10 9 14 14 O 1.21286 * 119.99767 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00145 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.47004 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00011 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00247 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99921 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47568 * 89.99782 * 21 19 17 23 23 H 1.48504 * 109.47531 * 210.00192 * 21 19 17 24 24 H 1.48503 * 109.47332 * 330.00066 * 21 19 17 25 25 C 1.53045 * 109.53694 * 61.35198 * 10 9 8 26 26 H 1.08993 * 109.49877 * 58.58562 * 25 10 9 27 27 O 1.42905 * 109.49618 * 178.65020 * 25 10 9 28 28 C 1.46928 * 120.62770 * 180.02562 * 7 5 4 29 29 H 1.09007 * 109.47567 * 299.99762 * 1 2 3 30 30 H 1.09003 * 109.47388 * 60.00117 * 1 2 3 31 31 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47255 * 240.00139 * 2 1 3 33 33 H 1.08998 * 109.47086 * 119.99531 * 2 1 3 34 34 H 1.09007 * 109.46744 * 59.99734 * 3 2 1 35 35 H 1.09003 * 109.46933 * 300.00162 * 3 2 1 36 36 H 1.08994 * 109.47255 * 60.00139 * 4 3 2 37 37 H 1.08998 * 109.47086 * 299.99531 * 4 3 2 38 38 H 1.08996 * 109.56502 * 113.76244 * 8 7 5 39 39 H 1.09001 * 109.61713 * 353.33665 * 8 7 5 40 40 H 1.09002 * 109.49815 * 185.44599 * 9 8 7 41 41 H 1.09000 * 109.49595 * 65.37996 * 9 8 7 42 42 H 0.97002 * 119.99861 * 265.00277 * 12 10 9 43 43 H 1.09002 * 109.47332 * 300.00177 * 15 13 12 44 44 H 1.08994 * 109.47475 * 60.00500 * 15 13 12 45 45 H 0.97008 * 120.00170 * 180.02562 * 20 19 17 46 46 H 0.96695 * 113.99845 * 179.97438 * 27 25 10 47 47 H 1.08997 * 109.58597 * 6.64243 * 28 7 5 48 48 H 1.09004 * 109.58075 * 246.21993 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2840 3.7852 0.0013 7 7 5.3973 3.1097 -0.0009 8 6 6.3639 2.0030 -0.0031 9 6 7.3385 2.1974 1.1627 10 6 7.9727 3.5869 1.0667 11 1 8.4908 3.6845 0.1128 12 7 8.9294 3.7635 2.1620 13 6 10.1946 3.3185 2.0299 14 8 10.5413 2.7722 1.0040 15 6 11.1786 3.4996 3.1568 16 16 12.7794 2.8037 2.6777 17 6 13.7090 3.1424 4.1357 18 1 13.2411 3.6434 4.9703 19 6 15.0426 2.7653 4.2118 20 7 15.7372 3.0188 5.3008 21 14 15.8518 1.8981 2.7687 22 1 16.4466 2.9066 1.8553 23 1 16.9180 0.9937 3.2692 24 1 14.8340 1.1044 2.0342 25 6 6.8816 4.6555 1.1660 26 1 6.3468 4.5428 2.1090 27 8 7.4779 5.9529 1.1079 28 6 5.9022 4.4895 0.0002 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9329 0.9289 -0.8908 37 1 3.9336 0.9286 0.8891 38 1 6.9148 2.0015 -0.9436 39 1 5.8366 1.0564 0.1154 40 1 8.1185 1.4375 1.1154 41 1 6.7998 2.1077 2.1060 42 1 8.6522 4.2006 2.9824 43 1 11.2942 4.5621 3.3711 44 1 10.8110 2.9875 4.0460 45 1 16.6693 2.7556 5.3538 46 1 6.8433 6.6803 1.1650 47 1 5.0700 5.1830 0.1206 48 1 6.4158 4.6913 -0.9398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757563231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:21 Heat of formation + Delta-G solvation = -168.296675 kcal Electronic energy + Delta-G solvation = -27687.796846 eV Core-core repulsion = 23674.000421 eV Total energy + Delta-G solvation = -4013.796425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -41.65667 -40.63487 -39.05402 -36.93764 -36.26087 -35.60312 -34.66818 -32.71429 -32.00007 -30.83914 -30.07577 -27.86249 -26.52760 -24.97355 -24.24835 -22.29060 -21.75949 -21.73036 -20.17027 -19.76418 -18.51874 -18.21426 -17.89945 -17.27533 -17.08280 -17.04695 -17.00355 -16.42876 -15.91917 -15.78415 -15.36871 -15.05269 -14.97717 -14.74174 -14.58118 -14.50771 -14.21083 -14.10554 -13.55169 -13.54497 -13.33834 -13.30250 -13.20969 -13.01084 -12.85516 -12.61245 -12.47403 -12.19996 -11.97444 -11.87425 -11.84500 -11.72437 -11.43270 -11.32296 -11.16717 -11.02090 -10.84305 -10.53674 -10.15236 -9.78273 -8.98656 -8.51046 -6.21846 0.99073 1.32379 1.46739 1.53669 1.56615 1.58770 1.83813 2.19989 2.26224 2.71449 2.87259 3.01444 3.42118 3.67699 3.74778 3.82565 3.89960 3.93920 3.99995 4.07010 4.12021 4.23194 4.33122 4.34100 4.45890 4.47514 4.52041 4.60494 4.65376 4.66600 4.70515 4.80832 4.93847 4.94782 5.02810 5.11508 5.12885 5.28511 5.37438 5.40427 5.42121 5.51952 5.70896 6.11648 6.28340 6.44577 6.74452 6.93983 7.08899 7.18554 8.61371 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.001920 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.792816 B =14577.304461 C =15308.367946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.137 4.137 5 C 0.513 3.487 6 O -0.583 6.583 7 N -0.609 5.609 8 C 0.110 3.890 9 C -0.139 4.139 10 C 0.151 3.849 11 H 0.072 0.928 12 N -0.703 5.703 13 C 0.540 3.460 14 O -0.559 6.559 15 C -0.112 4.112 16 S -0.170 6.170 17 C -0.531 4.531 18 H 0.060 0.940 19 C 0.046 3.954 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.259 1.259 24 H -0.235 1.235 25 C 0.100 3.900 26 H 0.077 0.923 27 O -0.570 6.570 28 C 0.086 3.914 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.414 0.586 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.277 0.723 46 H 0.399 0.601 47 H 0.095 0.905 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.482 -3.734 -10.901 32.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.176 4.176 5 C 0.303 3.697 6 O -0.464 6.464 7 N -0.343 5.343 8 C -0.013 4.013 9 C -0.179 4.179 10 C 0.046 3.954 11 H 0.090 0.910 12 N -0.355 5.355 13 C 0.325 3.675 14 O -0.437 6.437 15 C -0.263 4.263 16 S 0.056 5.944 17 C -0.679 4.679 18 H 0.079 0.921 19 C -0.160 4.160 20 N -0.555 5.555 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.158 1.158 25 C 0.039 3.961 26 H 0.095 0.905 27 O -0.377 6.377 28 C -0.038 4.038 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.143 0.857 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.250 0.750 47 H 0.113 0.887 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.618 -4.484 -12.533 32.472 hybrid contribution -0.026 1.370 1.564 2.079 sum -29.645 -3.114 -10.970 31.762 Atomic orbital electron populations 1.21791 0.96011 1.01967 1.01594 1.21528 0.95921 0.95429 1.03000 1.21338 0.93246 0.97437 1.02045 1.21826 0.97491 0.91727 1.06586 1.21414 0.81150 0.92921 0.74176 1.90683 1.55718 1.48159 1.51797 1.48198 1.05965 1.07021 1.73163 1.21956 0.90261 0.90394 0.98651 1.22290 0.99279 0.95760 1.00523 1.21035 0.88641 0.94548 0.91174 0.90995 1.45645 1.09222 1.60750 1.19865 1.19868 0.82786 0.77434 0.87386 1.90679 1.78538 1.43710 1.30762 1.23269 0.96069 1.05968 1.01020 1.84636 1.06589 1.78487 1.24661 1.22482 0.99242 1.44715 1.01461 0.92127 1.25574 0.96699 0.95212 0.98495 1.70021 1.10094 1.46703 1.28696 0.85856 0.80318 0.80269 0.79848 1.18845 1.18295 1.15831 1.22231 0.92050 0.83550 0.98262 0.90522 1.86605 1.38925 1.15344 1.96864 1.22224 0.97845 0.84610 0.99079 0.93146 0.93109 0.91961 0.90931 0.90970 0.92838 0.92866 0.86463 0.86419 0.90150 0.85733 0.90083 0.89484 0.74986 0.87448 0.86762 0.91380 0.75037 0.88662 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.12 -0.93 5.93 30.59 0.18 -0.75 16 3 C -0.10 -1.16 4.50 30.59 0.14 -1.02 16 4 C -0.14 -1.16 4.05 29.85 0.12 -1.04 16 5 C 0.51 8.04 7.70 87.66 0.67 8.72 16 6 O -0.58 -13.98 15.40 -3.05 -0.05 -14.03 16 7 N -0.61 -8.10 2.97 -818.94 -2.43 -10.54 16 8 C 0.11 1.10 6.34 86.36 0.55 1.65 16 9 C -0.14 -2.02 5.65 30.67 0.17 -1.85 16 10 C 0.15 2.95 2.12 45.02 0.10 3.04 16 11 H 0.07 1.82 7.57 -2.39 -0.02 1.80 16 12 N -0.70 -16.29 4.92 -442.41 -2.17 -18.46 16 13 C 0.54 18.02 7.81 87.66 0.68 18.70 16 14 O -0.56 -22.80 15.52 -3.05 -0.05 -22.85 16 15 C -0.11 -4.20 6.16 71.23 0.44 -3.76 16 16 S -0.17 -8.52 18.55 -56.49 -1.05 -9.57 16 17 C -0.53 -30.90 10.04 67.95 0.68 -30.22 16 18 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 19 C 0.05 2.67 5.50 84.86 0.47 3.13 16 20 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 21 Si 0.92 44.70 27.74 68.60 1.90 46.60 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.23 -11.34 6.74 99.48 0.67 -10.67 16 25 C 0.10 1.48 3.14 30.66 0.10 1.58 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 O -0.57 -9.36 13.16 -148.98 -1.96 -11.32 16 28 C 0.09 1.26 6.06 86.35 0.52 1.78 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.77 8.10 -2.38 -0.02 0.75 16 35 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 36 H 0.12 0.52 7.94 -2.39 -0.02 0.50 16 37 H 0.12 0.52 7.69 -2.39 -0.02 0.50 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.12 0.53 5.93 -2.39 -0.01 0.51 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.41 7.54 8.60 -92.71 -0.80 6.75 16 43 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 44 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 45 H 0.28 15.55 8.31 -92.70 -0.77 14.77 16 46 H 0.40 3.14 9.08 -74.06 -0.67 2.46 16 47 H 0.10 1.50 7.01 -2.39 -0.02 1.48 16 48 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -80.25 402.17 -0.51 -80.76 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.54 Total: 15.54 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.54 Total: -0.68 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -4.31 Total: -84.47 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -2.06 Total: -48.19 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.05 Total: -9.57 kcal Total: -80.25 -0.51 -80.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757563231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.534 kcal (2) G-P(sol) polarization free energy of solvation -80.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds