Wall clock time and date at job start Wed Apr 1 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47041 * 2 1 4 4 C 1.50700 * 109.46996 * 239.99683 * 2 1 3 5 5 H 1.08004 * 120.00459 * 237.69100 * 4 2 1 6 6 C 1.37885 * 119.99860 * 57.69721 * 4 2 1 7 7 N 1.31514 * 119.99578 * 6.57872 * 6 4 2 8 8 Si 1.86795 * 120.00098 * 186.57851 * 6 4 2 9 9 H 1.48494 * 109.47093 * 84.99132 * 8 6 4 10 10 H 1.48501 * 109.47180 * 204.99640 * 8 6 4 11 11 H 1.48511 * 109.47229 * 324.99419 * 8 6 4 12 12 C 1.53005 * 109.47256 * 120.00030 * 2 1 3 13 13 S 1.81395 * 109.47174 * 299.99980 * 12 2 1 14 14 O 1.42098 * 110.54224 * 68.37222 * 13 12 2 15 15 O 1.42105 * 110.54404 * 291.62771 * 13 12 2 16 16 N 1.65594 * 104.45100 * 180.02562 * 13 12 2 17 17 C 1.46498 * 120.00118 * 65.00019 * 16 13 12 18 18 H 1.08999 * 110.43339 * 337.54124 * 17 16 13 19 19 C 1.54710 * 110.48479 * 214.99988 * 17 16 13 20 20 C 1.54045 * 101.54804 * 216.59721 * 19 17 16 21 21 H 1.09005 * 109.82208 * 267.37087 * 20 19 17 22 22 C 1.52236 * 110.56424 * 145.84170 * 20 19 17 23 23 C 1.52684 * 110.36398 * 197.17258 * 22 20 19 24 24 C 1.52868 * 110.27681 * 60.55927 * 23 22 20 25 25 C 1.53111 * 109.56464 * 296.18811 * 24 23 22 26 26 N 1.46542 * 105.95209 * 25.91787 * 20 19 17 27 27 C 1.34802 * 110.76553 * 342.14667 * 26 20 19 28 28 O 1.21273 * 124.87136 * 181.21617 * 27 26 20 29 29 H 1.08998 * 109.47190 * 306.66956 * 1 2 3 30 30 H 1.08995 * 109.47196 * 66.67348 * 1 2 3 31 31 H 1.09010 * 109.47064 * 186.67150 * 1 2 3 32 32 H 1.09004 * 109.47021 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47184 * 299.99516 * 3 2 1 34 34 H 1.08999 * 109.47314 * 60.00295 * 3 2 1 35 35 H 0.96998 * 119.99326 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46937 * 179.97438 * 12 2 1 37 37 H 1.09004 * 109.47143 * 60.00219 * 12 2 1 38 38 H 0.97004 * 120.00029 * 244.99961 * 16 13 12 39 39 H 1.09001 * 111.01399 * 334.66311 * 19 17 16 40 40 H 1.09004 * 111.01064 * 98.49869 * 19 17 16 41 41 H 1.08995 * 109.32175 * 317.45386 * 22 20 19 42 42 H 1.09003 * 109.31640 * 76.89804 * 22 20 19 43 43 H 1.08997 * 109.34152 * 300.30775 * 23 22 20 44 44 H 1.09000 * 109.20113 * 180.72052 * 23 22 20 45 45 H 1.09000 * 109.45534 * 176.15888 * 24 23 22 46 46 H 1.08998 * 109.43985 * 56.21272 * 24 23 22 47 47 H 1.08996 * 109.64277 * 291.48655 * 25 24 23 48 48 H 1.08997 * 109.63748 * 170.87355 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6836 -1.5664 -1.1318 6 6 1.6604 -0.2678 -2.4822 7 7 0.9754 0.8478 -2.6084 8 14 2.1295 -1.2525 -3.9986 9 1 1.1192 -2.3157 -4.2305 10 1 2.1797 -0.3515 -5.1780 11 1 3.4629 -1.8732 -3.7929 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0542 -0.7400 3.9936 17 6 3.5027 -0.7963 4.2053 18 1 4.0317 -0.5721 3.2791 19 6 3.9177 -2.1862 4.7432 20 6 5.0460 -1.8133 5.7234 21 1 6.0083 -1.8571 5.2133 22 6 5.0483 -2.7552 6.9194 23 6 5.8547 -2.1536 8.0679 24 6 5.2392 -0.8255 8.5086 25 6 5.3248 0.1850 7.3615 26 7 4.7715 -0.4383 6.1492 27 6 3.9154 0.1633 5.2993 28 8 3.5316 1.3095 5.3975 29 1 -0.3633 0.6137 0.8243 30 1 -0.3633 0.4069 -0.9436 31 1 -0.3634 -1.0208 0.1194 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7142 1.1594 -3.4891 36 1 3.1301 -0.7216 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 1.4576 -1.2147 4.5933 39 1 3.0898 -2.6666 5.2647 40 1 4.2913 -2.8207 3.9394 41 1 4.0228 -2.9234 7.2480 42 1 5.4913 -3.7074 6.6276 43 1 6.8802 -1.9848 7.7394 44 1 5.8546 -2.8479 8.9082 45 1 5.7833 -0.4419 9.3717 46 1 4.1946 -0.9814 8.7780 47 1 6.3661 0.4577 7.1904 48 1 4.7467 1.0742 7.6127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416516607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:36 Heat of formation + Delta-G solvation = -108.300530 kcal Electronic energy + Delta-G solvation = -29946.221132 eV Core-core repulsion = 25935.026335 eV Total energy + Delta-G solvation = -4011.194797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03768 -37.55265 -36.44307 -36.25454 -35.92882 -35.18831 -33.45131 -32.37762 -31.66965 -28.40805 -26.75825 -26.62539 -25.69241 -25.21986 -23.49360 -22.28618 -21.24584 -19.73212 -19.43550 -18.66927 -17.53029 -16.76647 -16.66386 -16.09642 -15.90049 -15.24467 -15.10417 -14.86191 -14.73713 -14.57565 -14.26001 -13.94170 -13.63246 -13.41747 -13.30171 -12.97989 -12.89726 -12.63470 -12.48747 -11.95021 -11.83152 -11.73003 -11.44580 -11.31973 -11.29613 -11.16150 -11.12049 -11.02109 -10.93326 -10.91028 -10.68054 -10.61351 -10.34695 -10.26496 -10.04202 -9.64090 -9.51037 -9.07795 -8.83697 -8.68693 -8.37259 -6.03371 -4.15186 0.86187 2.48510 2.78443 3.23349 3.26049 3.33214 3.34129 4.01007 4.09065 4.27169 4.34301 4.42082 4.48318 4.50883 4.63128 4.71581 4.82714 4.88306 4.94114 5.09975 5.17865 5.21636 5.33334 5.40147 5.46901 5.51428 5.56835 5.59898 5.66276 5.66554 5.71183 5.90021 5.93142 6.37722 6.40177 6.69884 6.80805 6.90900 6.94675 7.02681 7.09646 7.33600 7.50741 7.68181 7.99404 8.11369 8.16134 8.34408 8.83051 9.49859 10.97730 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.003006 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.584182 B = 9312.926331 C = 9912.408254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.083 3.917 3 C -0.165 4.165 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.584 4.584 13 S 2.586 3.414 14 O -0.963 6.963 15 O -0.941 6.941 16 N -1.109 6.109 17 C 0.126 3.874 18 H 0.123 0.877 19 C -0.135 4.135 20 C 0.133 3.867 21 H 0.083 0.917 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.135 4.135 25 C 0.127 3.873 26 N -0.620 5.620 27 C 0.499 3.501 28 O -0.492 6.492 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.097 0.903 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.413 0.587 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 -9.819 19.925 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.081 3.919 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.717 4.717 13 S 2.683 3.317 14 O -0.953 6.953 15 O -0.931 6.931 16 N -0.864 5.864 17 C 0.014 3.986 18 H 0.141 0.859 19 C -0.174 4.174 20 C 0.028 3.972 21 H 0.101 0.899 22 C -0.165 4.165 23 C -0.157 4.157 24 C -0.173 4.173 25 C 0.006 3.994 26 N -0.358 5.358 27 C 0.283 3.717 28 O -0.363 6.363 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.247 0.753 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.699 -8.111 19.889 23.568 hybrid contribution 0.466 -1.388 -0.805 1.671 sum 10.164 -9.499 19.085 23.617 Atomic orbital electron populations 1.22215 0.96999 0.99657 1.03045 1.17919 0.92725 0.92332 0.88957 1.22314 0.99706 0.97723 1.02504 1.20932 1.30125 1.13797 0.89413 0.92282 1.24946 0.95093 0.94814 0.98896 1.69818 1.38436 1.20125 1.23543 0.86563 0.78821 0.79954 0.82352 1.20559 1.21210 1.20018 1.30581 1.11057 1.12978 1.17100 1.05998 0.74623 0.75508 0.75550 1.93559 1.29321 1.86634 1.85811 1.93625 1.77555 1.37057 1.84850 1.55868 1.11705 1.71074 1.47759 1.21312 0.82828 0.95209 0.99282 0.85947 1.23080 0.98738 0.96086 0.99534 1.21387 0.98925 0.81808 0.95057 0.89923 1.21688 1.01625 0.98392 0.94820 1.21362 0.99510 0.96676 0.98126 1.21859 1.02030 0.95667 0.97780 1.21514 0.98961 0.96034 0.82914 1.48481 1.47687 1.14161 1.25426 1.21437 0.78336 0.88076 0.83861 1.90803 1.55000 1.16800 1.73740 0.95481 0.88741 0.94580 0.94531 0.88438 0.95294 0.92696 0.86653 0.86193 0.75338 0.88853 0.87893 0.91189 0.90278 0.91622 0.91443 0.90538 0.91397 0.91509 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 7.58 37.16 0.28 -3.73 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.14 7.79 37.16 0.29 -3.85 16 4 C -0.50 -13.11 8.01 -34.44 -0.28 -13.38 16 5 H 0.06 1.48 7.75 -52.48 -0.41 1.07 16 6 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 7 N -0.88 -24.15 9.39 55.43 0.52 -23.63 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C -0.58 -11.18 4.92 37.16 0.18 -11.00 16 13 S 2.59 49.67 4.41 -107.50 -0.47 49.19 16 14 O -0.96 -20.84 15.84 -57.54 -0.91 -21.76 16 15 O -0.94 -21.41 14.99 -58.87 -0.88 -22.29 16 16 N -1.11 -15.52 5.43 -4.87 -0.03 -15.55 16 17 C 0.13 1.53 3.36 -67.91 -0.23 1.30 16 18 H 0.12 1.41 7.28 -51.93 -0.38 1.04 16 19 C -0.13 -0.99 6.38 -25.29 -0.16 -1.15 16 20 C 0.13 0.95 3.57 -67.75 -0.24 0.70 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 22 C -0.13 -0.66 5.45 -27.28 -0.15 -0.81 16 23 C -0.12 -0.60 5.81 -26.96 -0.16 -0.76 16 24 C -0.14 -0.83 6.06 -26.74 -0.16 -1.00 16 25 C 0.13 1.11 6.80 -3.65 -0.02 1.09 16 26 N -0.62 -6.45 3.15 -165.10 -0.52 -6.96 16 27 C 0.50 7.27 7.68 -10.70 -0.08 7.19 16 28 O -0.49 -9.65 17.03 5.53 0.09 -9.56 16 29 H 0.03 0.64 5.96 -51.93 -0.31 0.34 16 30 H 0.09 2.52 5.99 -51.93 -0.31 2.21 16 31 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 2.64 6.01 -51.93 -0.31 2.32 16 34 H 0.03 0.70 5.46 -51.93 -0.28 0.42 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 36 H 0.12 1.94 7.52 -51.92 -0.39 1.55 16 37 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 38 H 0.41 4.78 8.67 -34.47 -0.30 4.49 16 39 H 0.09 0.58 7.46 -51.93 -0.39 0.20 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.39 7.77 -51.93 -0.40 -0.01 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.90 7.72 -51.93 -0.40 0.50 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -36.04 375.56 -10.13 -46.17 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.67 Total: 5.12 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -0.90 Total: -21.85 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.03 Total: -46.14 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -1.70 Total: -53.60 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 49.67 SS G_CDS: -0.47 Total: 49.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.04 -10.13 -46.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416516607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.134 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds