Wall clock time and date at job start Wed Apr 1 2020 03:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47041 * 2 1 4 4 C 1.50700 * 109.46996 * 239.99683 * 2 1 3 5 5 H 1.08004 * 120.00459 * 237.69100 * 4 2 1 6 6 C 1.37885 * 119.99860 * 57.69721 * 4 2 1 7 7 N 1.31514 * 119.99578 * 6.57872 * 6 4 2 8 8 Si 1.86795 * 120.00098 * 186.57851 * 6 4 2 9 9 H 1.48494 * 109.47093 * 84.99132 * 8 6 4 10 10 H 1.48501 * 109.47180 * 204.99640 * 8 6 4 11 11 H 1.48511 * 109.47229 * 324.99419 * 8 6 4 12 12 C 1.53005 * 109.47256 * 120.00030 * 2 1 3 13 13 S 1.81395 * 109.47174 * 299.99980 * 12 2 1 14 14 O 1.42098 * 110.54224 * 68.37222 * 13 12 2 15 15 O 1.42105 * 110.54404 * 291.62771 * 13 12 2 16 16 N 1.65594 * 104.45100 * 180.02562 * 13 12 2 17 17 C 1.46498 * 120.00118 * 65.00019 * 16 13 12 18 18 H 1.08999 * 110.43339 * 337.54124 * 17 16 13 19 19 C 1.54710 * 110.48479 * 214.99988 * 17 16 13 20 20 C 1.54045 * 101.54804 * 216.59721 * 19 17 16 21 21 H 1.09005 * 109.82208 * 267.37087 * 20 19 17 22 22 C 1.52236 * 110.56424 * 145.84170 * 20 19 17 23 23 C 1.52684 * 110.36398 * 197.17258 * 22 20 19 24 24 C 1.52868 * 110.27681 * 60.55927 * 23 22 20 25 25 C 1.53111 * 109.56464 * 296.18811 * 24 23 22 26 26 N 1.46542 * 105.95209 * 25.91787 * 20 19 17 27 27 C 1.34802 * 110.76553 * 342.14667 * 26 20 19 28 28 O 1.21273 * 124.87136 * 181.21617 * 27 26 20 29 29 H 1.08998 * 109.47190 * 306.66956 * 1 2 3 30 30 H 1.08995 * 109.47196 * 66.67348 * 1 2 3 31 31 H 1.09010 * 109.47064 * 186.67150 * 1 2 3 32 32 H 1.09004 * 109.47021 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47184 * 299.99516 * 3 2 1 34 34 H 1.08999 * 109.47314 * 60.00295 * 3 2 1 35 35 H 0.96998 * 119.99326 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46937 * 179.97438 * 12 2 1 37 37 H 1.09004 * 109.47143 * 60.00219 * 12 2 1 38 38 H 0.97004 * 120.00029 * 244.99961 * 16 13 12 39 39 H 1.09001 * 111.01399 * 334.66311 * 19 17 16 40 40 H 1.09004 * 111.01064 * 98.49869 * 19 17 16 41 41 H 1.08995 * 109.32175 * 317.45386 * 22 20 19 42 42 H 1.09003 * 109.31640 * 76.89804 * 22 20 19 43 43 H 1.08997 * 109.34152 * 300.30775 * 23 22 20 44 44 H 1.09000 * 109.20113 * 180.72052 * 23 22 20 45 45 H 1.09000 * 109.45534 * 176.15888 * 24 23 22 46 46 H 1.08998 * 109.43985 * 56.21272 * 24 23 22 47 47 H 1.08996 * 109.64277 * 291.48655 * 25 24 23 48 48 H 1.08997 * 109.63748 * 170.87355 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6836 -1.5664 -1.1318 6 6 1.6604 -0.2678 -2.4822 7 7 0.9754 0.8478 -2.6084 8 14 2.1295 -1.2525 -3.9986 9 1 1.1192 -2.3157 -4.2305 10 1 2.1797 -0.3515 -5.1780 11 1 3.4629 -1.8732 -3.7929 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0542 -0.7400 3.9936 17 6 3.5027 -0.7963 4.2053 18 1 4.0317 -0.5721 3.2791 19 6 3.9177 -2.1862 4.7432 20 6 5.0460 -1.8133 5.7234 21 1 6.0083 -1.8571 5.2133 22 6 5.0483 -2.7552 6.9194 23 6 5.8547 -2.1536 8.0679 24 6 5.2392 -0.8255 8.5086 25 6 5.3248 0.1850 7.3615 26 7 4.7715 -0.4383 6.1492 27 6 3.9154 0.1633 5.2993 28 8 3.5316 1.3095 5.3975 29 1 -0.3633 0.6137 0.8243 30 1 -0.3633 0.4069 -0.9436 31 1 -0.3634 -1.0208 0.1194 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7142 1.1594 -3.4891 36 1 3.1301 -0.7216 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 1.4576 -1.2147 4.5933 39 1 3.0898 -2.6666 5.2647 40 1 4.2913 -2.8207 3.9394 41 1 4.0228 -2.9234 7.2480 42 1 5.4913 -3.7074 6.6276 43 1 6.8802 -1.9848 7.7394 44 1 5.8546 -2.8479 8.9082 45 1 5.7833 -0.4419 9.3717 46 1 4.1946 -0.9814 8.7780 47 1 6.3661 0.4577 7.1904 48 1 4.7467 1.0742 7.6127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416516607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:35 Heat of formation + Delta-G solvation = -134.923163 kcal Electronic energy + Delta-G solvation = -29947.375576 eV Core-core repulsion = 25935.026335 eV Total energy + Delta-G solvation = -4012.349241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87234 -38.47088 -38.12100 -38.04806 -36.92964 -36.78710 -34.26657 -33.62424 -33.06627 -29.16373 -28.33961 -27.69428 -27.46967 -27.22622 -24.15229 -22.91637 -21.97442 -21.43987 -20.53461 -19.85946 -18.92876 -17.95574 -17.73039 -17.57486 -17.10409 -16.84504 -16.57116 -16.21702 -15.68232 -15.35923 -15.00977 -14.98433 -14.69391 -14.60594 -14.43085 -14.36187 -14.15765 -14.02433 -13.74772 -13.29295 -13.22728 -12.98047 -12.85394 -12.78688 -12.71025 -12.51509 -12.36241 -12.20815 -12.13651 -12.09109 -11.99724 -11.78888 -11.75660 -11.56301 -11.50325 -11.43655 -11.28517 -10.62668 -10.37450 -10.14157 -9.65282 -8.01332 -6.19876 -0.64434 1.39203 1.47474 1.48758 1.56950 1.90236 2.05184 2.46568 2.86723 3.20949 3.28852 3.36344 3.38107 3.75726 3.88270 3.91329 3.98011 4.02962 4.06448 4.21821 4.31421 4.35766 4.46039 4.59795 4.62772 4.71846 4.85197 4.86896 4.91045 4.98612 4.99581 5.01604 5.07843 5.09371 5.18724 5.19445 5.24853 5.39271 5.49228 5.49958 5.66484 5.66987 5.96089 5.96865 6.12090 6.12754 6.35064 6.85532 7.15479 7.48445 8.98713 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.003006 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.584182 B = 9312.926331 C = 9912.408254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.071 3.929 3 C -0.161 4.161 4 C -0.515 4.515 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.263 1.263 12 C -0.578 4.578 13 S 2.598 3.402 14 O -0.994 6.994 15 O -0.984 6.984 16 N -1.094 6.094 17 C 0.113 3.887 18 H 0.128 0.872 19 C -0.122 4.122 20 C 0.125 3.875 21 H 0.103 0.897 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.128 4.128 25 C 0.118 3.882 26 N -0.611 5.611 27 C 0.482 3.518 28 O -0.561 6.561 29 H 0.023 0.977 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.426 0.574 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.079 0.921 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.557 -13.731 20.808 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 C -0.219 4.219 4 C -0.554 4.554 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.218 1.218 11 H -0.188 1.188 12 C -0.711 4.711 13 S 2.697 3.303 14 O -0.984 6.984 15 O -0.973 6.973 16 N -0.853 5.853 17 C 0.002 3.998 18 H 0.146 0.854 19 C -0.161 4.161 20 C 0.022 3.978 21 H 0.121 0.879 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.167 4.167 25 C -0.003 4.003 26 N -0.346 5.346 27 C 0.267 3.733 28 O -0.438 6.438 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.262 0.738 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.098 0.902 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.888 -12.082 20.809 26.838 hybrid contribution -0.142 -0.155 -0.984 1.006 sum 11.746 -12.237 19.824 26.091 Atomic orbital electron populations 1.22167 0.97972 1.00015 1.01553 1.17911 0.92163 0.91969 0.91105 1.22255 0.99792 0.98743 1.01127 1.21308 1.30038 1.14026 0.90058 0.91098 1.25732 0.95252 0.95610 1.01821 1.69977 1.39500 1.21509 1.23861 0.85594 0.78970 0.78446 0.78752 1.20185 1.21780 1.18775 1.30433 1.12768 1.13652 1.14289 1.05256 0.73713 0.75095 0.76270 1.93506 1.31405 1.87029 1.86495 1.93579 1.78064 1.40024 1.85671 1.55296 1.13140 1.70377 1.46461 1.21695 0.81236 0.97792 0.99123 0.85411 1.23219 0.99185 0.93289 1.00431 1.21778 0.99759 0.80072 0.96205 0.87949 1.21710 1.01872 0.98796 0.93801 1.21381 0.99626 0.95851 0.98682 1.21827 1.01900 0.95889 0.97035 1.21682 0.98945 0.96174 0.83521 1.48663 1.45817 1.15416 1.24728 1.21995 0.78627 0.87648 0.84991 1.90761 1.57792 1.19634 1.75634 0.95773 0.91186 0.93450 0.94161 0.90960 0.95512 0.93007 0.84016 0.83294 0.73797 0.87376 0.84560 0.91431 0.87649 0.90921 0.89982 0.89025 0.92423 0.90244 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.98 7.58 71.98 0.55 -7.44 16 2 C 0.07 3.39 0.52 -52.93 -0.03 3.37 16 3 C -0.16 -8.26 7.79 71.98 0.56 -7.70 16 4 C -0.52 -26.17 8.01 25.60 0.20 -25.97 16 5 H 0.07 3.36 7.75 -2.91 -0.02 3.33 16 6 C 0.02 0.79 5.09 84.66 0.43 1.22 16 7 N -0.91 -50.72 9.39 21.45 0.20 -50.52 16 8 Si 0.96 41.38 29.54 68.60 2.03 43.41 16 9 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 12 C -0.58 -21.01 4.92 71.98 0.35 -20.65 16 13 S 2.60 99.22 4.41 -56.49 -0.25 98.97 16 14 O -0.99 -43.27 15.84 -127.65 -2.02 -45.29 16 15 O -0.98 -46.04 14.99 -126.38 -1.89 -47.93 16 16 N -1.09 -29.17 5.43 -169.33 -0.92 -30.09 16 17 C 0.11 2.53 3.36 45.01 0.15 2.68 16 18 H 0.13 2.69 7.28 -2.39 -0.02 2.67 16 19 C -0.12 -1.28 6.38 31.53 0.20 -1.08 16 20 C 0.12 1.32 3.57 45.08 0.16 1.48 16 21 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 22 C -0.12 -0.75 5.45 30.24 0.16 -0.59 16 23 C -0.12 -0.75 5.81 30.45 0.18 -0.58 16 24 C -0.13 -1.34 6.06 30.59 0.19 -1.15 16 25 C 0.12 2.00 6.80 86.30 0.59 2.58 16 26 N -0.61 -11.91 3.15 -794.64 -2.50 -14.41 16 27 C 0.48 14.04 7.68 87.83 0.67 14.71 16 28 O -0.56 -23.20 17.03 -2.97 -0.05 -23.25 16 29 H 0.02 1.18 5.96 -2.39 -0.01 1.16 16 30 H 0.07 3.83 5.99 -2.39 -0.01 3.82 16 31 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.07 4.05 6.01 -2.39 -0.01 4.03 16 34 H 0.03 1.34 5.46 -2.39 -0.01 1.33 16 35 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.14 4.36 7.52 -2.39 -0.02 4.35 16 37 H 0.15 4.53 8.14 -2.39 -0.02 4.51 16 38 H 0.43 9.18 8.67 -96.74 -0.84 8.34 16 39 H 0.11 0.86 7.46 -2.39 -0.02 0.84 16 40 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.07 0.48 7.77 -2.39 -0.02 0.46 16 42 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 44 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.06 1.35 7.72 -2.39 -0.02 1.33 16 Total: -1.00 -82.31 375.56 -0.91 -83.22 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.13 Total: 24.99 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 4.37 Total: -39.11 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.22 Total: -95.02 kcal Atomic # 8 Polarization: -112.50 SS G_CDS: -3.97 Total: -116.47 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 99.22 SS G_CDS: -0.25 Total: 98.97 kcal Total: -82.31 -0.91 -83.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416516607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.704 kcal (2) G-P(sol) polarization free energy of solvation -82.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds