Wall clock time and date at job start Wed Apr 1 2020 02:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47427 * 239.99961 * 2 1 3 5 5 N 1.46501 * 109.47264 * 119.99654 * 2 1 3 6 6 N 1.28784 * 125.44547 * 359.97438 * 5 2 1 7 7 N 1.29002 * 108.72021 * 180.02562 * 6 5 2 8 8 C 1.33314 * 107.35650 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.54559 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46891 * 90.02473 * 9 8 7 11 11 O 1.45201 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.34804 * 116.99925 * 179.97438 * 11 10 9 13 13 O 1.21526 * 120.00158 * 359.97438 * 12 11 10 14 14 C 1.47288 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.39296 * 120.28603 * 354.83939 * 14 12 11 16 16 C 1.38205 * 120.08627 * 180.27692 * 15 14 12 17 17 C 1.38842 * 120.68093 * 359.73704 * 16 15 14 18 18 C 1.37598 * 120.58249 * 0.02562 * 17 16 15 19 19 C 1.40703 * 119.88779 * 0.02562 * 18 17 16 20 20 C 1.40861 * 120.33435 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00819 * 145.73608 * 20 19 18 22 22 C 1.40300 * 119.99625 * 325.73972 * 20 19 18 23 23 N 1.30615 * 120.00178 * 339.67941 * 22 20 19 24 24 Si 1.86801 * 120.00058 * 159.68932 * 22 20 19 25 25 H 1.48493 * 109.47173 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.46636 * 299.99423 * 24 22 20 27 27 H 1.48494 * 109.47212 * 59.99337 * 24 22 20 28 28 N 1.28880 * 125.45130 * 180.30773 * 5 2 1 29 29 H 1.08995 * 109.47019 * 300.00205 * 1 2 3 30 30 H 1.08997 * 109.46861 * 59.99918 * 1 2 3 31 31 H 1.08993 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46906 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46651 * 299.99872 * 3 2 1 34 34 H 1.09002 * 109.46921 * 59.99883 * 3 2 1 35 35 H 1.09002 * 109.47347 * 300.00069 * 4 2 1 36 36 H 1.09005 * 109.47278 * 59.99629 * 4 2 1 37 37 H 1.09000 * 109.47952 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.47251 * 330.02640 * 9 8 7 39 39 H 1.09002 * 109.47289 * 210.02288 * 9 8 7 40 40 H 1.08999 * 109.47037 * 60.00036 * 10 9 8 41 41 H 1.09000 * 109.47230 * 299.99501 * 10 9 8 42 42 H 1.08000 * 119.95653 * 0.02562 * 15 14 12 43 43 H 1.07997 * 119.65882 * 179.75950 * 16 15 14 44 44 H 1.07994 * 119.70815 * 180.02562 * 17 16 15 45 45 H 1.07997 * 120.05357 * 180.02562 * 18 17 16 46 46 H 0.97001 * 119.99911 * 355.29856 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 7 1.2782 -1.2170 2.1092 7 7 2.0400 -1.7371 3.0109 8 6 3.3017 -1.5226 2.6377 9 6 4.5420 -1.9510 3.3788 10 6 4.9612 -3.3452 2.9082 11 8 6.1566 -3.7577 3.6219 12 6 6.6596 -4.9720 3.3226 13 8 6.1138 -5.6671 2.4884 14 6 7.8701 -5.4570 4.0073 15 6 8.5612 -4.6254 4.8855 16 6 9.6998 -5.0827 5.5214 17 6 10.1657 -6.3718 5.2999 18 6 9.5020 -7.2182 4.4419 19 6 8.3409 -6.7773 3.7808 20 6 7.6543 -7.6358 2.9000 21 1 6.5783 -7.5838 2.8243 22 6 8.3685 -8.5586 2.1210 23 7 9.6426 -8.3773 1.8981 24 14 7.4970 -10.0464 1.4022 25 1 8.4660 -10.8598 0.6247 26 1 6.9311 -10.8677 2.5024 27 1 6.4012 -9.5941 0.5081 28 7 3.2573 -0.8630 1.5063 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 4.3357 -1.9754 4.4488 39 1 5.3468 -1.2432 3.1800 40 1 5.1676 -3.3208 1.8382 41 1 4.1565 -4.0530 3.1071 42 1 8.2091 -3.6206 5.0666 43 1 10.2325 -4.4309 6.1980 44 1 11.0569 -6.7130 5.8055 45 1 9.8717 -8.2193 4.2761 46 1 10.0801 -7.5709 2.2130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849671663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:29 Heat of formation + Delta-G solvation = 44.036825 kcal Electronic energy + Delta-G solvation = -29005.317411 eV Core-core repulsion = 24897.577257 eV Total energy + Delta-G solvation = -4107.740154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.50252 -39.46028 -38.07171 -37.52269 -35.62165 -34.11093 -33.82450 -33.45405 -30.74521 -29.96384 -29.42199 -28.08367 -28.02723 -25.59749 -24.88164 -24.42941 -22.62369 -21.58955 -21.05077 -20.84876 -19.86325 -18.04793 -17.44121 -17.32731 -16.72457 -15.88027 -15.75613 -14.94704 -14.80765 -14.67517 -14.52620 -14.27219 -14.02968 -13.79839 -13.68164 -13.47942 -13.18013 -13.03657 -12.87527 -12.69170 -12.38809 -12.36465 -12.22506 -12.06861 -11.98792 -11.67679 -11.56524 -11.40325 -11.18952 -11.02620 -11.00092 -10.94179 -10.75613 -10.42185 -10.23550 -10.19119 -9.94585 -9.75251 -9.14787 -8.89946 -7.86849 -7.69020 -7.27745 -4.58431 1.10154 1.62670 2.00440 2.08699 2.71133 3.15746 3.26183 3.29790 3.36286 3.69205 3.78467 3.97516 4.00248 4.10692 4.12089 4.39765 4.53550 4.86627 4.89248 4.94515 5.03506 5.05438 5.09231 5.12608 5.18471 5.31624 5.36465 5.41271 5.53130 5.56329 5.58786 5.74664 5.88052 5.91059 5.99352 6.06390 6.08376 6.19937 6.46460 6.71481 6.91291 7.16213 7.30136 7.45995 7.55178 7.71035 7.80159 8.04519 8.12859 8.26634 8.60277 8.72291 9.00662 9.93267 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.002323 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.066139 B =12048.859882 C =13389.194257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 C -0.158 4.158 4 C -0.160 4.160 5 N -0.132 5.132 6 N -0.064 5.064 7 N -0.280 5.280 8 C 0.173 3.827 9 C -0.020 4.020 10 C 0.078 3.922 11 O -0.367 6.367 12 C 0.505 3.495 13 O -0.513 6.513 14 C -0.254 4.254 15 C -0.022 4.022 16 C -0.261 4.261 17 C -0.070 4.070 18 C -0.201 4.201 19 C 0.121 3.879 20 C -0.465 4.465 21 H 0.104 0.896 22 C 0.032 3.968 23 N -0.784 5.784 24 Si 1.070 2.930 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.272 1.272 28 N -0.299 5.299 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 16.358 -5.058 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.217 4.217 4 C -0.219 4.219 5 N -0.046 5.046 6 N -0.056 5.056 7 N -0.151 5.151 8 C -0.109 4.109 9 C -0.060 4.060 10 C 0.002 3.998 11 O -0.286 6.286 12 C 0.356 3.644 13 O -0.404 6.404 14 C -0.257 4.257 15 C -0.041 4.041 16 C -0.280 4.280 17 C -0.089 4.089 18 C -0.219 4.219 19 C 0.117 3.883 20 C -0.491 4.491 21 H 0.122 0.878 22 C -0.191 4.191 23 N -0.407 5.407 24 Si 0.893 3.107 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.197 1.197 28 N -0.149 5.149 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.127 0.873 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.616 14.893 -6.379 21.164 hybrid contribution 0.243 1.460 0.943 1.754 sum -13.373 16.353 -5.437 21.813 Atomic orbital electron populations 1.22087 0.90092 1.04683 1.04205 1.21395 0.96425 0.92725 0.79707 1.22232 1.03401 0.92071 1.03946 1.22249 1.03496 1.01190 0.94933 1.50506 1.01205 1.34867 1.18015 1.78920 1.22018 1.09119 0.95539 1.75879 1.00880 1.18506 1.19860 1.25290 0.95373 0.98556 0.91714 1.19719 0.89847 0.96732 0.99737 1.22530 0.86987 0.93922 0.96352 1.86522 1.41582 1.37462 1.63073 1.21317 0.84442 0.77615 0.81034 1.90748 1.60382 1.55956 1.33288 1.18659 0.99881 0.95794 1.11339 1.20913 0.93324 0.97173 0.92676 1.20333 1.01268 0.97420 1.08996 1.20807 0.97461 0.94008 0.96612 1.21193 0.99781 0.99386 1.01581 1.17463 0.90549 0.89187 0.91085 1.21200 0.98533 1.12326 1.17051 0.87808 1.27312 0.94920 1.01896 0.94923 1.70388 1.10767 1.27779 1.31782 0.83561 0.75873 0.74036 0.77260 1.19761 1.19765 1.19744 1.74621 1.03163 1.20362 1.16803 0.90633 0.89267 0.90544 0.90330 0.89179 0.91450 0.91271 0.89154 0.90274 0.87463 0.87853 0.91596 0.91332 0.87673 0.88537 0.88620 0.87322 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 7.91 37.16 0.29 -0.54 16 2 C 0.18 1.30 1.30 -131.82 -0.17 1.13 16 3 C -0.16 -0.88 8.66 37.16 0.32 -0.55 16 4 C -0.16 -1.03 8.67 37.16 0.32 -0.71 16 5 N -0.13 -1.54 3.73 0.48 0.00 -1.54 16 6 N -0.06 -0.86 12.24 60.35 0.74 -0.12 16 7 N -0.28 -4.25 12.50 32.44 0.41 -3.85 16 8 C 0.17 2.45 7.62 -156.63 -1.19 1.26 16 9 C -0.02 -0.27 6.22 -27.88 -0.17 -0.44 16 10 C 0.08 1.32 5.46 37.16 0.20 1.53 16 11 O -0.37 -7.39 9.48 -40.78 -0.39 -7.77 16 12 C 0.51 12.25 7.85 34.41 0.27 12.52 16 13 O -0.51 -13.64 13.38 -19.28 -0.26 -13.90 16 14 C -0.25 -6.34 5.92 -104.39 -0.62 -6.96 16 15 C -0.02 -0.49 9.60 -39.20 -0.38 -0.87 16 16 C -0.26 -5.50 10.03 -39.37 -0.39 -5.90 16 17 C -0.07 -1.53 10.01 -39.59 -0.40 -1.93 16 18 C -0.20 -4.92 7.90 -38.88 -0.31 -5.23 16 19 C 0.12 3.22 5.16 -106.54 -0.55 2.67 16 20 C -0.46 -12.64 7.62 -37.81 -0.29 -12.92 16 21 H 0.10 2.94 5.99 -52.49 -0.31 2.62 16 22 C 0.03 0.82 5.01 -17.29 -0.09 0.74 16 23 N -0.78 -20.63 12.60 55.57 0.70 -19.93 16 24 Si 1.07 22.13 29.98 -169.99 -5.10 17.04 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 N -0.30 -3.98 11.83 32.46 0.38 -3.59 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.11 2.05 7.61 -52.49 -0.40 1.65 16 43 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.11 2.69 6.99 -52.49 -0.37 2.33 16 46 H 0.30 8.06 6.62 -40.82 -0.27 7.79 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -31.68 391.16 -7.25 -38.93 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.49 Total: 5.05 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.15 Total: -16.21 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 2.23 Total: -29.03 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.64 Total: -21.67 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.10 Total: 17.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.68 -7.25 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849671663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.962 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds