Wall clock time and date at job start Wed Apr 1 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47427 * 239.99961 * 2 1 3 5 5 N 1.46501 * 109.47264 * 119.99654 * 2 1 3 6 6 N 1.28784 * 125.44547 * 359.97438 * 5 2 1 7 7 N 1.29002 * 108.72021 * 180.02562 * 6 5 2 8 8 C 1.33314 * 107.35650 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.54559 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46891 * 90.02473 * 9 8 7 11 11 O 1.45201 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.34804 * 116.99925 * 179.97438 * 11 10 9 13 13 O 1.21526 * 120.00158 * 359.97438 * 12 11 10 14 14 C 1.47288 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.39296 * 120.28603 * 354.83939 * 14 12 11 16 16 C 1.38205 * 120.08627 * 180.27692 * 15 14 12 17 17 C 1.38842 * 120.68093 * 359.73704 * 16 15 14 18 18 C 1.37598 * 120.58249 * 0.02562 * 17 16 15 19 19 C 1.40703 * 119.88779 * 0.02562 * 18 17 16 20 20 C 1.40861 * 120.33435 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00819 * 145.73608 * 20 19 18 22 22 C 1.40300 * 119.99625 * 325.73972 * 20 19 18 23 23 N 1.30615 * 120.00178 * 339.67941 * 22 20 19 24 24 Si 1.86801 * 120.00058 * 159.68932 * 22 20 19 25 25 H 1.48493 * 109.47173 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.46636 * 299.99423 * 24 22 20 27 27 H 1.48494 * 109.47212 * 59.99337 * 24 22 20 28 28 N 1.28880 * 125.45130 * 180.30773 * 5 2 1 29 29 H 1.08995 * 109.47019 * 300.00205 * 1 2 3 30 30 H 1.08997 * 109.46861 * 59.99918 * 1 2 3 31 31 H 1.08993 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46906 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46651 * 299.99872 * 3 2 1 34 34 H 1.09002 * 109.46921 * 59.99883 * 3 2 1 35 35 H 1.09002 * 109.47347 * 300.00069 * 4 2 1 36 36 H 1.09005 * 109.47278 * 59.99629 * 4 2 1 37 37 H 1.09000 * 109.47952 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.47251 * 330.02640 * 9 8 7 39 39 H 1.09002 * 109.47289 * 210.02288 * 9 8 7 40 40 H 1.08999 * 109.47037 * 60.00036 * 10 9 8 41 41 H 1.09000 * 109.47230 * 299.99501 * 10 9 8 42 42 H 1.08000 * 119.95653 * 0.02562 * 15 14 12 43 43 H 1.07997 * 119.65882 * 179.75950 * 16 15 14 44 44 H 1.07994 * 119.70815 * 180.02562 * 17 16 15 45 45 H 1.07997 * 120.05357 * 180.02562 * 18 17 16 46 46 H 0.97001 * 119.99911 * 355.29856 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 7 1.2782 -1.2170 2.1092 7 7 2.0400 -1.7371 3.0109 8 6 3.3017 -1.5226 2.6377 9 6 4.5420 -1.9510 3.3788 10 6 4.9612 -3.3452 2.9082 11 8 6.1566 -3.7577 3.6219 12 6 6.6596 -4.9720 3.3226 13 8 6.1138 -5.6671 2.4884 14 6 7.8701 -5.4570 4.0073 15 6 8.5612 -4.6254 4.8855 16 6 9.6998 -5.0827 5.5214 17 6 10.1657 -6.3718 5.2999 18 6 9.5020 -7.2182 4.4419 19 6 8.3409 -6.7773 3.7808 20 6 7.6543 -7.6358 2.9000 21 1 6.5783 -7.5838 2.8243 22 6 8.3685 -8.5586 2.1210 23 7 9.6426 -8.3773 1.8981 24 14 7.4970 -10.0464 1.4022 25 1 8.4660 -10.8598 0.6247 26 1 6.9311 -10.8677 2.5024 27 1 6.4012 -9.5941 0.5081 28 7 3.2573 -0.8630 1.5063 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 4.3357 -1.9754 4.4488 39 1 5.3468 -1.2432 3.1800 40 1 5.1676 -3.3208 1.8382 41 1 4.1565 -4.0530 3.1071 42 1 8.2091 -3.6206 5.0666 43 1 10.2325 -4.4309 6.1980 44 1 11.0569 -6.7130 5.8055 45 1 9.8717 -8.2193 4.2761 46 1 10.0801 -7.5709 2.2130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849671663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:27 Heat of formation + Delta-G solvation = 26.759309 kcal Electronic energy + Delta-G solvation = -29006.066621 eV Core-core repulsion = 24897.577257 eV Total energy + Delta-G solvation = -4108.489363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.51525 -41.28006 -39.35469 -38.71934 -37.38098 -35.88452 -35.09594 -34.42849 -32.23696 -31.53479 -31.18209 -28.56145 -28.53145 -27.40966 -26.08973 -25.60478 -24.29567 -22.94302 -22.69952 -21.70153 -21.60707 -19.93836 -18.62401 -18.36064 -17.98306 -17.47764 -17.45684 -16.57763 -16.08471 -15.87257 -15.70700 -15.37431 -15.31756 -15.11028 -14.99957 -14.82845 -14.44526 -14.09283 -14.05659 -13.83058 -13.49851 -13.26151 -13.15525 -13.11972 -12.92991 -12.88124 -12.85503 -12.72180 -12.59108 -12.50162 -12.21310 -12.09285 -12.02887 -11.97774 -11.95406 -11.60855 -11.55041 -11.19035 -11.01214 -10.79811 -9.73055 -9.56692 -9.23268 -6.57493 0.09938 0.21440 0.81287 0.88201 0.90719 1.45373 1.59920 1.75553 1.80724 1.90812 2.26659 2.65032 2.79908 3.09121 3.45498 3.48118 3.52957 3.61953 3.76038 3.89097 4.12114 4.14390 4.31213 4.36684 4.39546 4.42899 4.49441 4.50755 4.57394 4.65495 4.68557 4.69193 4.73493 4.75482 4.83650 4.89414 4.99225 5.05493 5.08129 5.18988 5.27527 5.33947 5.46070 5.59576 5.68368 5.80907 5.92108 6.13961 6.26729 6.68058 6.76541 7.13392 7.22432 7.95069 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.002323 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.066139 B =12048.859882 C =13389.194257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 C -0.153 4.153 4 C -0.158 4.158 5 N -0.118 5.118 6 N -0.073 5.073 7 N -0.309 5.309 8 C 0.162 3.838 9 C -0.007 4.007 10 C 0.080 3.920 11 O -0.355 6.355 12 C 0.505 3.495 13 O -0.546 6.546 14 C -0.278 4.278 15 C -0.024 4.024 16 C -0.244 4.244 17 C -0.062 4.062 18 C -0.222 4.222 19 C 0.099 3.901 20 C -0.506 4.506 21 H 0.080 0.920 22 C 0.001 3.999 23 N -0.804 5.804 24 Si 1.114 2.886 25 H -0.261 1.261 26 H -0.257 1.257 27 H -0.272 1.272 28 N -0.305 5.305 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.058 18.650 -4.789 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 C -0.211 4.211 4 C -0.216 4.216 5 N -0.034 5.034 6 N -0.065 5.065 7 N -0.179 5.179 8 C -0.121 4.121 9 C -0.046 4.046 10 C 0.004 3.996 11 O -0.273 6.273 12 C 0.356 3.644 13 O -0.439 6.439 14 C -0.280 4.280 15 C -0.043 4.043 16 C -0.263 4.263 17 C -0.080 4.080 18 C -0.241 4.241 19 C 0.095 3.905 20 C -0.533 4.533 21 H 0.098 0.902 22 C -0.216 4.216 23 N -0.427 5.427 24 Si 0.931 3.069 25 H -0.185 1.185 26 H -0.182 1.182 27 H -0.197 1.197 28 N -0.156 5.156 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.115 0.885 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.617 17.220 -6.080 22.780 hybrid contribution 0.210 1.025 0.912 1.388 sum -13.407 18.245 -5.168 23.224 Atomic orbital electron populations 1.22143 0.88491 1.04338 1.05745 1.22060 0.97775 0.93536 0.78415 1.22261 1.02616 0.90768 1.05483 1.22289 1.02528 1.00816 0.95964 1.51081 1.00574 1.33489 1.18274 1.78847 1.22122 1.09597 0.95932 1.75837 1.01425 1.19602 1.21016 1.25377 0.95346 0.99157 0.92194 1.19647 0.90200 0.94407 1.00395 1.22693 0.85241 0.95862 0.95810 1.86472 1.42539 1.35319 1.62952 1.21389 0.84299 0.78345 0.80378 1.90731 1.61356 1.57151 1.34654 1.19031 1.00670 0.96058 1.12274 1.21270 0.93298 0.98059 0.91631 1.20877 1.00260 0.97321 1.07861 1.21248 0.97858 0.93918 0.94988 1.21185 1.00193 0.99728 1.03030 1.17845 0.91507 0.89943 0.91164 1.21146 0.97568 1.15071 1.19558 0.90170 1.28505 0.94976 1.03736 0.94390 1.70494 1.11320 1.27483 1.33366 0.83041 0.75113 0.71538 0.77190 1.18508 1.18162 1.19733 1.74590 1.04118 1.20395 1.16472 0.91163 0.85617 0.91826 0.91537 0.85618 0.91907 0.92754 0.85440 0.91767 0.85966 0.85872 0.92501 0.92577 0.84694 0.84211 0.85030 0.88527 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.91 71.98 0.57 -0.78 16 2 C 0.16 2.11 1.30 3.60 0.00 2.12 16 3 C -0.15 -1.35 8.66 71.98 0.62 -0.73 16 4 C -0.16 -1.80 8.67 71.98 0.62 -1.18 16 5 N -0.12 -2.70 3.73 -152.39 -0.57 -3.27 16 6 N -0.07 -1.99 12.24 37.02 0.45 -1.53 16 7 N -0.31 -9.44 12.50 -51.27 -0.64 -10.08 16 8 C 0.16 4.56 7.62 138.55 1.06 5.61 16 9 C -0.01 -0.17 6.22 29.85 0.19 0.02 16 10 C 0.08 2.73 5.46 71.98 0.39 3.12 16 11 O -0.35 -14.20 9.48 -57.15 -0.54 -14.74 16 12 C 0.50 25.04 7.85 70.20 0.55 25.59 16 13 O -0.55 -30.44 13.38 19.75 0.26 -30.18 16 14 C -0.28 -13.97 5.92 -19.71 -0.12 -14.09 16 15 C -0.02 -1.02 9.60 22.52 0.22 -0.80 16 16 C -0.24 -9.37 10.03 22.41 0.22 -9.14 16 17 C -0.06 -2.54 10.01 22.26 0.22 -2.32 16 18 C -0.22 -11.01 7.90 22.72 0.18 -10.83 16 19 C 0.10 5.41 5.16 -21.10 -0.11 5.30 16 20 C -0.51 -28.96 7.62 23.41 0.18 -28.78 16 21 H 0.08 4.85 5.99 -2.91 -0.02 4.83 16 22 C 0.00 0.05 5.01 85.38 0.43 0.48 16 23 N -0.80 -43.82 12.60 21.89 0.28 -43.54 16 24 Si 1.11 46.06 29.98 68.60 2.06 48.11 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 N -0.30 -8.00 11.83 -51.21 -0.61 -8.61 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.14 4.78 7.61 -2.91 -0.02 4.75 16 43 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 44 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 45 H 0.10 4.93 6.99 -2.91 -0.02 4.91 16 46 H 0.29 16.02 6.62 -92.71 -0.61 15.41 16 Total: -1.00 -72.99 391.16 7.07 -65.92 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 1.15 Total: 24.34 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 5.23 Total: -26.41 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.09 Total: -67.03 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.28 Total: -44.92 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.06 Total: 48.11 kcal Total: -72.99 7.07 -65.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849671663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.677 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds