Wall clock time and date at job start Wed Apr 1 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 H 1.08992 * 109.47137 * 54.69142 * 3 2 1 5 5 O 1.42899 * 109.46850 * 294.68667 * 3 2 1 6 6 C 1.42900 * 113.99692 * 150.00280 * 5 3 2 7 7 C 1.50697 * 109.46918 * 174.69094 * 3 2 1 8 8 O 1.21286 * 120.00325 * 109.15096 * 7 3 2 9 9 N 1.34781 * 120.00184 * 289.14755 * 7 3 2 10 10 C 1.47417 * 125.65206 * 174.83132 * 9 7 3 11 11 C 1.54905 * 104.83345 * 204.09340 * 10 9 7 12 12 H 1.09006 * 111.00424 * 81.10030 * 11 10 9 13 13 C 1.52998 * 111.00727 * 204.91323 * 11 10 9 14 14 C 1.55153 * 101.58291 * 322.99106 * 11 10 9 15 15 H 1.09003 * 110.71629 * 276.96296 * 14 11 10 16 16 N 1.46500 * 110.72570 * 153.86672 * 14 11 10 17 17 C 1.34768 * 120.00408 * 154.99472 * 16 14 11 18 18 O 1.21285 * 119.99949 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00065 * 179.97438 * 17 16 14 20 20 S 1.81008 * 109.46969 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99724 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99936 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99923 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99766 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99999 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46825 * 60.00447 * 25 23 21 27 27 H 1.48498 * 109.46942 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47048 * 300.00339 * 25 23 21 29 29 C 1.47019 * 125.64399 * 354.52147 * 9 7 3 30 30 H 1.09004 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47305 * 299.99751 * 1 2 3 32 32 H 1.08995 * 109.47397 * 60.00213 * 1 2 3 33 33 H 1.09002 * 109.46754 * 239.99727 * 2 1 3 34 34 H 1.09007 * 109.46938 * 120.00285 * 2 1 3 35 35 H 1.08997 * 109.47533 * 60.00103 * 6 5 3 36 36 H 1.09006 * 109.47005 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.47291 * 299.99578 * 6 5 3 38 38 H 1.09003 * 110.36670 * 322.92943 * 10 9 7 39 39 H 1.09000 * 110.37024 * 85.25517 * 10 9 7 40 40 H 1.09002 * 109.46997 * 58.54215 * 13 11 10 41 41 H 1.08996 * 109.47605 * 178.54506 * 13 11 10 42 42 H 1.09002 * 109.47220 * 298.55102 * 13 11 10 43 43 H 0.97006 * 119.99494 * 334.99755 * 16 14 11 44 44 H 1.08994 * 109.47452 * 300.00354 * 19 17 16 45 45 H 1.08992 * 109.46824 * 60.00960 * 19 17 16 46 46 H 0.96997 * 119.99644 * 179.97438 * 24 23 21 47 47 H 1.09001 * 109.88475 * 298.39422 * 29 9 7 48 48 H 1.09004 * 109.88183 * 59.56483 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6011 1.9830 0.8386 5 8 1.6682 2.0791 -1.2242 6 6 1.4616 3.4882 -1.1070 7 6 3.5412 1.4444 0.1315 8 8 4.2324 1.7590 -0.8142 9 7 4.1159 1.0967 1.3000 10 6 5.5638 0.9515 1.5358 11 6 5.6743 -0.0144 2.7418 12 1 5.5692 -1.0514 2.4227 13 6 6.9908 0.1944 3.4929 14 6 4.4644 0.4275 3.6067 15 1 4.7231 1.2915 4.2189 16 7 3.9955 -0.6781 4.4458 17 6 3.3340 -0.4211 5.5914 18 8 3.1264 0.7255 5.9277 19 6 2.8513 -1.5585 6.4542 20 16 2.0057 -0.8945 7.9104 21 6 1.5604 -2.3964 8.7170 22 1 1.8264 -3.3457 8.2758 23 6 0.8689 -2.3595 9.9199 24 7 0.5453 -1.2025 10.4578 25 14 0.3975 -3.9518 10.7754 26 1 1.6246 -4.7263 11.0908 27 1 -0.3295 -3.6417 12.0327 28 1 -0.4779 -4.7530 9.8827 29 6 3.4027 0.8055 2.5522 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.3808 3.9630 -0.7639 36 1 1.1821 3.8964 -2.0783 37 1 0.6638 3.6801 -0.3896 38 1 6.0496 0.5216 0.6598 39 1 6.0069 1.9167 1.7810 40 1 7.0524 1.2265 3.8380 41 1 7.0310 -0.4782 4.3496 42 1 7.8269 -0.0161 2.8260 43 1 4.1613 -1.5952 4.1766 44 1 2.1596 -2.1788 5.8842 45 1 3.7026 -2.1607 6.7712 46 1 0.0617 -1.1767 11.2982 47 1 2.8510 1.6871 2.8783 48 1 2.7176 -0.0291 2.4032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341990621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:54 Heat of formation + Delta-G solvation = -122.288680 kcal Electronic energy + Delta-G solvation = -28325.205148 eV Core-core repulsion = 24313.403779 eV Total energy + Delta-G solvation = -4011.801369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86925 -39.56853 -38.29518 -37.22344 -34.47017 -33.85158 -32.70040 -32.47958 -30.08820 -28.63034 -27.98769 -27.07846 -25.65536 -25.52674 -23.40956 -22.14935 -21.02496 -20.39107 -19.82236 -17.94942 -17.77680 -17.24545 -16.68182 -16.37838 -15.99562 -15.85361 -15.08953 -15.00232 -14.85092 -14.74284 -14.46879 -14.08755 -13.85018 -13.79606 -13.65671 -13.29876 -13.11608 -13.02741 -12.66310 -12.60612 -12.40189 -12.29882 -12.12063 -11.88180 -11.62677 -11.53623 -11.34599 -11.16170 -11.10222 -11.08007 -11.01700 -10.83971 -10.80233 -9.88461 -9.62543 -9.53776 -9.15572 -9.09417 -8.95984 -8.31606 -6.56739 -6.26941 -3.98213 2.27016 2.44829 2.90569 2.93256 3.19716 3.23334 3.26003 3.41272 3.58710 3.91517 4.15278 4.21494 4.28506 4.48169 4.53832 4.55903 4.76747 4.86882 4.96693 5.00339 5.04855 5.06915 5.08486 5.11600 5.14361 5.26110 5.34065 5.39945 5.42883 5.46644 5.48109 5.53889 5.64321 5.68135 5.73586 5.77430 5.79945 5.83017 5.96858 5.99323 6.05193 6.43066 6.65885 7.13192 7.51678 7.54505 7.84598 8.29608 8.44082 9.18509 10.80384 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.002391 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.941232 B =11708.636375 C =12968.693144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.078 3.922 4 H 0.086 0.914 5 O -0.356 6.356 6 C 0.028 3.972 7 C 0.508 3.492 8 O -0.526 6.526 9 N -0.617 5.617 10 C 0.112 3.888 11 C -0.111 4.111 12 H 0.091 0.909 13 C -0.141 4.141 14 C 0.143 3.857 15 H 0.110 0.890 16 N -0.729 5.729 17 C 0.534 3.466 18 O -0.513 6.513 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C 0.080 3.920 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.401 0.599 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.269 0.731 47 H 0.079 0.921 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 2.684 -20.673 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.104 0.896 5 O -0.273 6.273 6 C -0.069 4.069 7 C 0.295 3.705 8 O -0.401 6.401 9 N -0.354 5.354 10 C -0.011 4.011 11 C -0.131 4.131 12 H 0.110 0.890 13 C -0.199 4.199 14 C 0.036 3.964 15 H 0.127 0.873 16 N -0.383 5.383 17 C 0.321 3.679 18 O -0.387 6.387 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.044 4.044 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.236 0.764 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.706 4.816 -20.727 22.311 hybrid contribution 0.033 -2.564 0.368 2.591 sum 6.739 2.252 -20.359 21.563 Atomic orbital electron populations 1.21729 0.93996 1.02423 1.02568 1.21610 0.97653 0.92570 1.03619 1.22102 0.90151 0.96894 0.89230 0.89596 1.87988 1.88153 1.20989 1.30158 1.22884 0.99824 0.81241 1.02923 1.21167 0.91338 0.76829 0.81119 1.90713 1.64655 1.46934 1.37789 1.48494 1.07875 1.69090 1.09905 1.22290 0.81523 0.99362 0.97887 1.22669 0.95484 1.00168 0.94733 0.89049 1.21700 0.95129 1.02802 1.00263 1.21910 0.91716 0.91975 0.90818 0.87252 1.45963 1.60047 1.09017 1.23289 1.20398 0.76552 0.90792 0.80185 1.90716 1.54517 1.22345 1.71085 1.23536 1.04394 0.99732 1.02810 1.85403 1.70078 1.11399 1.16345 1.22815 1.42940 0.92843 1.09907 0.90953 1.24992 0.95014 0.97340 0.96188 1.70002 1.37198 1.24342 1.18718 0.86226 0.78721 0.81969 0.78609 1.19919 1.20796 1.19922 1.22719 0.96048 1.02030 0.83600 0.91956 0.92409 0.91757 0.90414 0.89919 0.93855 0.89106 0.93666 0.89990 0.90889 0.91933 0.91507 0.91945 0.76432 0.89107 0.89103 0.92079 0.90311 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.81 37.16 0.36 -0.81 16 2 C -0.12 -1.01 5.56 -26.73 -0.15 -1.16 16 3 C 0.08 0.79 1.91 -27.89 -0.05 0.73 16 4 H 0.09 0.76 7.56 -51.93 -0.39 0.36 16 5 O -0.36 -4.04 9.45 -54.90 -0.52 -4.56 16 6 C 0.03 0.24 10.81 101.05 1.09 1.33 16 7 C 0.51 6.09 7.11 -10.98 -0.08 6.02 16 8 O -0.53 -8.20 16.83 -14.12 -0.24 -8.44 16 9 N -0.62 -6.17 3.33 -170.52 -0.57 -6.74 16 10 C 0.11 0.97 6.36 -2.54 -0.02 0.95 16 11 C -0.11 -0.81 3.27 -88.48 -0.29 -1.10 16 12 H 0.09 0.58 8.01 -51.93 -0.42 0.17 16 13 C -0.14 -0.95 9.29 37.16 0.35 -0.61 16 14 C 0.14 1.38 2.78 -66.09 -0.18 1.19 16 15 H 0.11 1.26 7.42 -51.93 -0.39 0.87 16 16 N -0.73 -7.86 5.11 -52.03 -0.27 -8.12 16 17 C 0.53 8.66 7.85 -10.99 -0.09 8.57 16 18 O -0.51 -10.37 15.51 5.55 0.09 -10.29 16 19 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 20 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 21 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 22 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 23 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 25 Si 0.92 20.80 29.55 -169.99 -5.02 15.77 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 C 0.08 0.76 5.93 -3.06 -0.02 0.74 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.65 5.79 -51.93 -0.30 0.35 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 38 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 40 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.40 3.23 8.56 -40.82 -0.35 2.88 16 44 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 45 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.70 5.90 -51.93 -0.31 0.39 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -35.38 407.64 -8.52 -43.90 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.01 Total: -0.03 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 1.35 Total: 0.81 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: -0.10 Total: -39.60 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.67 Total: -23.28 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.38 -8.52 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341990621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.384 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds