Wall clock time and date at job start Wed Apr 1 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47157 * 2 1 4 4 H 1.09000 * 109.47168 * 55.00131 * 3 2 1 5 5 C 1.52997 * 109.46988 * 174.99739 * 3 2 1 6 6 N 1.46503 * 109.46987 * 175.00225 * 5 3 2 7 7 C 1.34777 * 119.99855 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00000 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99634 * 179.97438 * 7 6 5 10 10 S 1.81007 * 109.46594 * 180.02562 * 9 7 6 11 11 C 1.76211 * 99.99797 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99510 * 0.02562 * 11 10 9 13 13 C 1.38792 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00011 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00376 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46976 * 89.99711 * 15 13 11 17 17 H 1.48490 * 109.47245 * 210.00159 * 15 13 11 18 18 H 1.48503 * 109.47024 * 330.00560 * 15 13 11 19 19 N 1.46496 * 109.47234 * 295.00271 * 3 2 1 20 20 C 1.34772 * 120.00268 * 85.00018 * 19 3 2 21 21 O 1.21279 * 120.00032 * 359.97438 * 20 19 3 22 22 C 1.50706 * 120.00208 * 180.02562 * 20 19 3 23 23 C 1.53000 * 110.45572 * 61.14719 * 22 20 19 24 24 C 1.54507 * 110.51081 * 183.90644 * 22 20 19 25 25 C 1.54475 * 104.06383 * 118.64294 * 24 22 20 26 26 O 1.44420 * 104.80392 * 336.01627 * 25 24 22 27 27 C 1.44423 * 105.27595 * 40.51627 * 26 25 24 28 28 H 1.08995 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46923 * 300.00085 * 1 2 3 30 30 H 1.09001 * 109.46875 * 59.99848 * 1 2 3 31 31 H 1.09002 * 109.46709 * 240.00372 * 2 1 3 32 32 H 1.09001 * 109.46875 * 120.00152 * 2 1 3 33 33 H 1.08996 * 109.47402 * 295.00030 * 5 3 2 34 34 H 1.08997 * 109.47115 * 55.00380 * 5 3 2 35 35 H 0.96993 * 120.00217 * 359.97438 * 6 5 3 36 36 H 1.08996 * 109.47624 * 299.99700 * 9 7 6 37 37 H 1.08999 * 109.47489 * 60.00326 * 9 7 6 38 38 H 0.96996 * 120.00046 * 179.97438 * 14 13 11 39 39 H 0.97002 * 119.99879 * 264.99553 * 19 3 2 40 40 H 1.08997 * 109.46901 * 60.70450 * 23 22 20 41 41 H 1.09002 * 109.46850 * 180.70393 * 23 22 20 42 42 H 1.08999 * 109.47224 * 300.69952 * 23 22 20 43 43 H 1.09005 * 110.50705 * 237.29026 * 24 22 20 44 44 H 1.08997 * 110.51238 * 359.97438 * 24 22 20 45 45 H 1.08997 * 110.37147 * 217.18377 * 25 24 22 46 46 H 1.09009 * 110.46669 * 94.89789 * 25 24 22 47 47 H 1.08999 * 110.37271 * 200.65620 * 27 26 25 48 48 H 1.08997 * 110.47114 * 78.36030 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0631 2.8168 0.0061 7 6 5.3858 3.0629 0.0860 8 8 6.1636 2.1481 0.2565 9 6 5.8983 4.4746 -0.0377 10 16 7.7023 4.4765 0.1097 11 6 8.0219 6.2004 -0.0672 12 1 7.2031 6.8889 -0.2150 13 6 9.3258 6.6733 -0.0157 14 7 9.5645 7.9611 -0.1473 15 14 10.7418 5.4825 0.2420 16 1 11.2313 5.0030 -1.0755 17 1 11.8444 6.1723 0.9586 18 1 10.2753 4.3255 1.0476 19 7 1.6525 2.0975 -1.2517 20 6 0.4352 2.6644 -1.3669 21 8 -0.3395 2.6320 -0.4343 22 6 0.0363 3.3378 -2.6548 23 6 0.0446 2.3328 -3.8084 24 6 -1.3555 3.9938 -2.5142 25 6 -1.0881 5.4964 -2.7526 26 8 0.3060 5.6800 -2.4228 27 6 0.9800 4.5218 -2.9614 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.8499 1.0377 1.0961 34 1 3.9954 0.8311 -0.6658 35 1 3.4412 3.5483 -0.1314 36 1 5.6130 4.8811 -1.0080 37 1 5.4680 5.0881 0.7539 38 1 10.4757 8.2916 -0.1109 39 1 2.2720 2.1232 -1.9977 40 1 -0.6695 1.5359 -3.6012 41 1 -0.2337 2.8388 -4.7329 42 1 1.0430 1.9081 -3.9131 43 1 -2.0396 3.6033 -3.2677 44 1 -1.7553 3.8308 -1.5134 45 1 -1.7156 6.1019 -2.0987 46 1 -1.2684 5.7548 -3.7961 47 1 1.9413 4.3786 -2.4678 48 1 1.1188 4.6275 -4.0373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531082425.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:45 Heat of formation + Delta-G solvation = -131.087934 kcal Electronic energy + Delta-G solvation = -28644.074241 eV Core-core repulsion = 24631.891308 eV Total energy + Delta-G solvation = -4012.182933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24716 -39.57408 -38.82848 -36.72684 -34.31683 -33.92619 -32.54311 -32.44419 -30.35543 -29.92241 -27.97221 -26.89336 -25.62469 -24.11871 -23.53215 -22.81439 -21.17380 -20.44015 -19.98159 -18.06887 -17.57355 -17.06004 -16.50486 -16.41102 -16.13724 -15.83397 -15.59665 -15.28159 -15.07458 -14.95587 -14.34039 -13.91753 -13.85161 -13.72150 -13.61427 -13.52557 -13.25075 -13.04783 -12.80485 -12.79917 -12.45733 -12.16412 -11.92995 -11.90357 -11.76422 -11.51316 -11.44186 -11.27132 -11.18257 -11.08395 -11.01831 -10.62045 -10.35546 -9.90813 -9.87312 -9.62097 -9.40042 -9.10322 -9.00231 -8.52042 -6.93332 -6.29355 -4.01559 2.24329 2.63672 2.75713 2.91223 3.27086 3.32423 3.49414 3.56416 3.62096 3.86298 4.13809 4.28162 4.32174 4.41431 4.51933 4.63108 4.71913 4.73455 4.76028 4.80266 5.01216 5.05646 5.08012 5.09593 5.14647 5.22480 5.23912 5.27451 5.36006 5.44057 5.45580 5.47292 5.54220 5.65322 5.68596 5.74032 5.75234 5.80697 5.99591 6.08062 6.14274 6.36408 6.40980 7.08027 7.50554 7.84030 7.93740 8.40797 8.41911 9.16612 10.79928 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.002652 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.845066 B =10557.505238 C =12209.971586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.134 3.866 4 H 0.097 0.903 5 C 0.113 3.887 6 N -0.738 5.738 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.125 4.125 10 S -0.141 6.141 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.724 5.724 20 C 0.533 3.467 21 O -0.524 6.524 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.143 4.143 25 C 0.045 3.955 26 O -0.366 6.366 27 C 0.056 3.944 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.534 -13.542 -7.386 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.029 3.971 4 H 0.115 0.885 5 C -0.011 4.011 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.377 5.377 20 C 0.319 3.681 21 O -0.400 6.400 22 C -0.122 4.122 23 C -0.193 4.193 24 C -0.181 4.181 25 C -0.032 4.032 26 O -0.284 6.284 27 C -0.022 4.022 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.237 0.763 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.556 -14.771 -6.289 28.506 hybrid contribution -0.229 1.007 -0.728 1.264 sum -23.785 -13.764 -7.017 28.362 Atomic orbital electron populations 1.21784 0.94582 1.00682 1.03001 1.21884 0.97205 0.95035 1.02888 1.21361 0.93598 0.94417 0.87693 0.88462 1.21604 0.91488 0.84569 1.03477 1.45965 1.07761 1.09001 1.76580 1.20300 0.81479 0.91048 0.75431 1.90708 1.55472 1.46113 1.46913 1.23280 1.03053 0.95404 1.05790 1.84771 0.97998 1.13034 1.95686 1.22318 0.97247 0.89881 1.57459 0.89353 1.24715 0.98268 0.95039 0.93289 1.69941 1.21439 1.12555 1.47725 0.86735 0.82422 0.82504 0.80183 1.19220 1.19941 1.15923 1.46062 1.16779 1.58028 1.16835 1.20099 0.81443 0.77541 0.89032 1.90695 1.50930 1.58302 1.40073 1.22212 0.98125 0.97387 0.94485 1.21814 1.02986 0.98190 0.96317 1.23066 0.94858 0.94911 1.05235 1.23456 0.83451 0.95727 1.00592 1.89212 1.19153 1.41721 1.78319 1.23544 0.95796 0.83148 0.99671 0.93446 0.92072 0.92621 0.91449 0.90548 0.89886 0.90858 0.76543 0.88504 0.88417 0.91927 0.76306 0.91527 0.90931 0.91622 0.89932 0.88157 0.88773 0.92101 0.88736 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.52 37.16 0.32 -0.86 16 2 C -0.13 -0.93 5.61 -26.73 -0.15 -1.08 16 3 C 0.13 1.06 2.42 -67.93 -0.16 0.90 16 4 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16 5 C 0.11 1.08 5.23 -4.04 -0.02 1.06 16 6 N -0.74 -8.60 5.39 -60.30 -0.32 -8.93 16 7 C 0.53 8.94 7.85 -10.99 -0.09 8.86 16 8 O -0.52 -10.63 15.86 5.56 0.09 -10.55 16 9 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 10 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 11 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 12 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 13 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 14 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 15 Si 0.86 21.68 27.74 -169.99 -4.72 16.96 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 19 N -0.72 -5.15 4.09 -53.81 -0.22 -5.37 16 20 C 0.53 4.65 5.06 -10.98 -0.06 4.59 16 21 O -0.52 -6.20 12.43 5.56 0.07 -6.13 16 22 C -0.12 -0.81 0.88 -154.09 -0.14 -0.95 16 23 C -0.14 -0.62 8.22 37.16 0.31 -0.31 16 24 C -0.14 -1.01 6.32 -25.17 -0.16 -1.17 16 25 C 0.04 0.34 7.63 37.93 0.29 0.63 16 26 O -0.37 -3.88 11.65 -35.23 -0.41 -4.29 16 27 C 0.06 0.43 6.70 37.94 0.25 0.68 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 30 H 0.05 0.51 5.64 -51.93 -0.29 0.21 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 4.03 8.14 -40.82 -0.33 3.69 16 36 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 37 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.40 2.30 7.95 -40.82 -0.32 1.97 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 42 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 43 H 0.08 0.43 7.74 -51.93 -0.40 0.03 16 44 H 0.10 0.91 6.51 -51.93 -0.34 0.58 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.09 0.71 7.44 -51.93 -0.39 0.32 16 48 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -35.56 397.04 -7.83 -43.39 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.91 Total: 2.02 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 0.83 Total: -1.77 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.23 Total: -40.08 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.25 Total: -20.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.56 -7.83 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531082425.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.697 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds