Wall clock time and date at job start Wed Apr 1 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47567 * 2 1 4 4 H 1.09002 * 109.46818 * 55.00067 * 3 2 1 5 5 C 1.52997 * 109.47341 * 175.00105 * 3 2 1 6 6 N 1.46497 * 109.46983 * 175.00384 * 5 3 2 7 7 C 1.34780 * 119.99566 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 6 11 11 H 1.09007 * 110.45650 * 54.29717 * 10 9 7 12 12 C 1.54509 * 110.51508 * 176.90166 * 10 9 7 13 13 C 1.54477 * 104.06179 * 118.64530 * 12 10 9 14 14 O 1.44422 * 104.80662 * 23.97936 * 13 12 10 15 15 C 1.44648 * 105.36857 * 319.56827 * 14 13 12 16 16 N 1.46503 * 109.47195 * 295.00464 * 3 2 1 17 17 C 1.34778 * 120.00217 * 84.99616 * 16 3 2 18 18 O 1.21282 * 119.99911 * 0.02562 * 17 16 3 19 19 C 1.50691 * 120.00066 * 179.97438 * 17 16 3 20 20 S 1.80998 * 109.47242 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00099 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99976 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00005 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99986 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00065 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46740 * 60.00097 * 25 23 21 27 27 H 1.48502 * 109.47024 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47174 * 300.00136 * 25 23 21 29 29 H 1.08993 * 109.47522 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46586 * 300.00328 * 1 2 3 31 31 H 1.09009 * 109.46855 * 59.99053 * 1 2 3 32 32 H 1.09006 * 109.46816 * 240.00371 * 2 1 3 33 33 H 1.08997 * 109.47103 * 120.00267 * 2 1 3 34 34 H 1.09001 * 109.46832 * 55.00200 * 5 3 2 35 35 H 1.09002 * 109.47153 * 295.00391 * 5 3 2 36 36 H 0.96995 * 120.00423 * 359.97438 * 6 5 3 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.08993 * 110.51483 * 237.29019 * 12 10 9 40 40 H 1.09005 * 110.50865 * 0.02562 * 12 10 9 41 41 H 1.08997 * 110.37004 * 142.81371 * 13 12 10 42 42 H 1.09009 * 110.37121 * 265.03659 * 13 12 10 43 43 H 1.08994 * 110.33695 * 281.58923 * 15 14 13 44 44 H 1.09002 * 110.50733 * 159.18634 * 15 14 13 45 45 H 0.97001 * 119.99424 * 264.99384 * 16 3 2 46 46 H 1.08999 * 109.47676 * 300.00384 * 19 17 16 47 47 H 1.09003 * 109.47322 * 60.00000 * 19 17 16 48 48 H 0.97004 * 120.00440 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0060 7 6 5.3859 3.0627 0.0859 8 8 6.1636 2.1480 0.2573 9 6 5.8984 4.4746 -0.0367 10 6 7.4232 4.4763 0.0889 11 1 7.8657 3.7889 -0.6322 12 6 7.9813 5.9032 -0.1106 13 6 8.6776 6.2248 1.2303 14 8 8.9976 4.9362 1.7984 15 6 7.8485 4.1010 1.5258 16 7 1.6525 2.0975 -1.2518 17 6 0.4352 2.6645 -1.3669 18 8 -0.3392 2.6328 -0.4340 19 6 0.0368 3.3388 -2.6543 20 16 -1.6416 3.9975 -2.4961 21 6 -1.8434 4.7085 -4.0956 22 1 -1.0433 4.6477 -4.8184 23 6 -3.0302 5.3476 -4.4263 24 7 -4.0053 5.4222 -3.5452 25 14 -3.2439 6.1020 -6.1218 26 1 -3.1060 5.0443 -7.1551 27 1 -4.5907 6.7194 -6.2228 28 1 -2.2051 7.1413 -6.3356 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9954 0.8310 -0.6660 35 1 3.8500 1.0375 1.0960 36 1 3.4412 3.5482 -0.1314 37 1 5.6129 4.8818 -1.0066 38 1 5.4683 5.0873 0.7556 39 1 8.7014 5.9208 -0.9287 40 1 7.1708 6.6075 -0.2983 41 1 9.5873 6.7997 1.0571 42 1 8.0020 6.7735 1.8866 43 1 7.0451 4.3208 2.2289 44 1 8.1215 3.0470 1.5778 45 1 2.2721 2.1232 -1.9977 46 1 0.7282 4.1543 -2.8665 47 1 0.0681 2.6148 -3.4685 48 1 -4.8349 5.8685 -3.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688775607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:45 Heat of formation + Delta-G solvation = -137.614597 kcal Electronic energy + Delta-G solvation = -27584.990289 eV Core-core repulsion = 23572.524338 eV Total energy + Delta-G solvation = -4012.465950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57670 -39.79373 -39.04073 -36.56240 -34.12434 -33.87892 -32.50251 -32.46908 -30.36345 -29.53505 -28.53504 -26.91500 -25.53461 -23.69154 -23.09351 -21.57006 -21.08114 -20.45950 -20.29306 -18.04038 -17.60638 -16.81537 -16.60342 -16.54177 -16.01871 -15.99286 -15.63027 -15.28084 -15.09980 -14.85632 -14.39941 -14.15594 -13.89930 -13.63869 -13.50474 -13.32147 -13.12574 -13.05770 -12.60596 -12.55470 -12.27992 -12.02022 -11.81567 -11.63446 -11.51726 -11.30872 -11.21596 -11.09573 -11.08656 -11.01103 -10.84874 -10.80040 -10.13831 -10.11738 -9.87961 -9.51767 -9.38473 -9.11847 -8.97636 -8.31369 -6.56614 -6.27335 -3.98428 2.31456 2.75833 2.94004 2.99980 3.18997 3.23365 3.26101 3.61721 3.64653 4.09570 4.14999 4.31673 4.34027 4.44810 4.57398 4.68912 4.81242 4.92537 4.96105 4.96379 5.06403 5.08025 5.11459 5.18724 5.22942 5.32997 5.37749 5.39900 5.42483 5.53507 5.54357 5.64619 5.73196 5.78442 5.82361 5.83169 5.99679 6.05406 6.08492 6.18220 6.45355 6.50792 6.57987 7.14067 7.53415 7.57797 7.88071 8.29085 8.50300 9.18101 10.79894 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.002237 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.057717 B =12513.996548 C =14636.704473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.729 5.729 7 C 0.512 3.488 8 O -0.540 6.540 9 C -0.136 4.136 10 C -0.105 4.105 11 H 0.092 0.908 12 C -0.154 4.154 13 C 0.043 3.957 14 O -0.379 6.379 15 C 0.055 3.945 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.508 6.508 19 C -0.155 4.155 20 S -0.057 6.057 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.777 -3.433 7.281 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.382 5.382 7 C 0.299 3.701 8 O -0.417 6.417 9 C -0.176 4.176 10 C -0.124 4.124 11 H 0.111 0.889 12 C -0.191 4.191 13 C -0.034 4.034 14 O -0.298 6.298 15 C -0.022 4.022 16 N -0.392 5.392 17 C 0.319 3.681 18 O -0.381 6.381 19 C -0.306 4.306 20 S 0.169 5.831 21 C -0.686 4.686 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.241 0.759 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.232 0.768 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.034 -4.148 9.138 23.305 hybrid contribution 0.394 0.933 -2.828 3.003 sum 21.427 -3.215 6.310 22.568 Atomic orbital electron populations 1.21806 0.93979 1.00765 1.03848 1.21880 0.97831 0.94944 1.02199 1.21247 0.92343 0.94750 0.88771 0.88642 1.21684 0.92791 0.83525 1.03156 1.46042 1.07699 1.10083 1.74367 1.20680 0.82024 0.91450 0.75964 1.90708 1.55777 1.46588 1.48631 1.21805 0.96363 0.94405 1.05036 1.22284 0.93695 0.97195 0.99235 0.88933 1.23044 1.00950 0.96276 0.98867 1.23409 1.00208 0.86781 0.93013 1.89168 1.39241 1.22227 1.79157 1.23545 0.88330 0.96496 0.93835 1.46130 1.17449 1.59497 1.16111 1.20267 0.80767 0.77481 0.89601 1.90725 1.50233 1.57138 1.40034 1.23547 1.07117 1.02797 0.97110 1.85386 1.06401 1.70848 1.20448 1.22818 1.03979 1.42231 0.99528 0.91023 1.24986 0.94833 0.95532 0.98174 1.69999 1.05039 1.40898 1.34298 0.86233 0.77559 0.79262 0.82510 1.19935 1.20786 1.19940 0.93549 0.91995 0.91747 0.91711 0.91176 0.90809 0.90024 0.75919 0.88120 0.88461 0.90313 0.90067 0.89170 0.92277 0.92604 0.88144 0.76813 0.89367 0.89328 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.52 37.16 0.32 -1.57 16 2 C -0.13 -1.25 5.61 -26.73 -0.15 -1.40 16 3 C 0.13 1.29 2.42 -67.93 -0.16 1.13 16 4 H 0.10 1.08 7.58 -51.93 -0.39 0.68 16 5 C 0.11 0.92 5.23 -4.04 -0.02 0.89 16 6 N -0.73 -5.70 5.39 -60.30 -0.32 -6.02 16 7 C 0.51 4.54 7.63 -10.98 -0.08 4.46 16 8 O -0.54 -6.56 14.91 5.56 0.08 -6.48 16 9 C -0.14 -0.86 4.92 -27.88 -0.14 -1.00 16 10 C -0.10 -0.78 2.71 -89.05 -0.24 -1.02 16 11 H 0.09 0.80 7.96 -51.93 -0.41 0.38 16 12 C -0.15 -0.92 6.74 -25.16 -0.17 -1.09 16 13 C 0.04 0.30 7.64 37.93 0.29 0.59 16 14 O -0.38 -3.90 11.65 -35.23 -0.41 -4.31 16 15 C 0.05 0.49 6.30 37.93 0.24 0.73 16 16 N -0.74 -7.99 4.47 -53.81 -0.24 -8.23 16 17 C 0.53 8.50 6.42 -10.99 -0.07 8.43 16 18 O -0.51 -9.93 13.00 5.56 0.07 -9.86 16 19 C -0.16 -2.84 6.16 36.00 0.22 -2.62 16 20 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 21 C -0.54 -14.75 9.50 30.94 0.29 -14.45 16 22 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 25 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 31 H 0.06 1.01 5.65 -51.92 -0.29 0.72 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.41 2.87 8.14 -40.82 -0.33 2.54 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.50 8.01 -51.93 -0.42 0.08 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.37 7.73 -51.93 -0.40 -0.03 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 43 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 44 H 0.10 1.02 7.71 -51.93 -0.40 0.62 16 45 H 0.40 3.47 8.60 -40.82 -0.35 3.12 16 46 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 47 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 402.04 15.07 6.06 6.06 Total: -1.00 -34.33 402.04 -9.04 -43.37 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.01 Total: 3.02 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 0.23 Total: -4.95 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.17 Total: -38.99 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.26 Total: -20.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.33 -9.04 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688775607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.242 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds