Wall clock time and date at job start Wed Apr 1 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47567 * 2 1 4 4 H 1.09002 * 109.46818 * 55.00067 * 3 2 1 5 5 C 1.52997 * 109.47341 * 175.00105 * 3 2 1 6 6 N 1.46497 * 109.46983 * 175.00384 * 5 3 2 7 7 C 1.34780 * 119.99566 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 6 11 11 H 1.09007 * 110.45650 * 54.29717 * 10 9 7 12 12 C 1.54509 * 110.51508 * 176.90166 * 10 9 7 13 13 C 1.54477 * 104.06179 * 118.64530 * 12 10 9 14 14 O 1.44422 * 104.80662 * 23.97936 * 13 12 10 15 15 C 1.44648 * 105.36857 * 319.56827 * 14 13 12 16 16 N 1.46503 * 109.47195 * 295.00464 * 3 2 1 17 17 C 1.34778 * 120.00217 * 84.99616 * 16 3 2 18 18 O 1.21282 * 119.99911 * 0.02562 * 17 16 3 19 19 C 1.50691 * 120.00066 * 179.97438 * 17 16 3 20 20 S 1.80998 * 109.47242 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00099 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99976 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00005 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99986 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00065 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46740 * 60.00097 * 25 23 21 27 27 H 1.48502 * 109.47024 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47174 * 300.00136 * 25 23 21 29 29 H 1.08993 * 109.47522 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46586 * 300.00328 * 1 2 3 31 31 H 1.09009 * 109.46855 * 59.99053 * 1 2 3 32 32 H 1.09006 * 109.46816 * 240.00371 * 2 1 3 33 33 H 1.08997 * 109.47103 * 120.00267 * 2 1 3 34 34 H 1.09001 * 109.46832 * 55.00200 * 5 3 2 35 35 H 1.09002 * 109.47153 * 295.00391 * 5 3 2 36 36 H 0.96995 * 120.00423 * 359.97438 * 6 5 3 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.08993 * 110.51483 * 237.29019 * 12 10 9 40 40 H 1.09005 * 110.50865 * 0.02562 * 12 10 9 41 41 H 1.08997 * 110.37004 * 142.81371 * 13 12 10 42 42 H 1.09009 * 110.37121 * 265.03659 * 13 12 10 43 43 H 1.08994 * 110.33695 * 281.58923 * 15 14 13 44 44 H 1.09002 * 110.50733 * 159.18634 * 15 14 13 45 45 H 0.97001 * 119.99424 * 264.99384 * 16 3 2 46 46 H 1.08999 * 109.47676 * 300.00384 * 19 17 16 47 47 H 1.09003 * 109.47322 * 60.00000 * 19 17 16 48 48 H 0.97004 * 120.00440 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0060 7 6 5.3859 3.0627 0.0859 8 8 6.1636 2.1480 0.2573 9 6 5.8984 4.4746 -0.0367 10 6 7.4232 4.4763 0.0889 11 1 7.8657 3.7889 -0.6322 12 6 7.9813 5.9032 -0.1106 13 6 8.6776 6.2248 1.2303 14 8 8.9976 4.9362 1.7984 15 6 7.8485 4.1010 1.5258 16 7 1.6525 2.0975 -1.2518 17 6 0.4352 2.6645 -1.3669 18 8 -0.3392 2.6328 -0.4340 19 6 0.0368 3.3388 -2.6543 20 16 -1.6416 3.9975 -2.4961 21 6 -1.8434 4.7085 -4.0956 22 1 -1.0433 4.6477 -4.8184 23 6 -3.0302 5.3476 -4.4263 24 7 -4.0053 5.4222 -3.5452 25 14 -3.2439 6.1020 -6.1218 26 1 -3.1060 5.0443 -7.1551 27 1 -4.5907 6.7194 -6.2228 28 1 -2.2051 7.1413 -6.3356 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9954 0.8310 -0.6660 35 1 3.8500 1.0375 1.0960 36 1 3.4412 3.5482 -0.1314 37 1 5.6129 4.8818 -1.0066 38 1 5.4683 5.0873 0.7556 39 1 8.7014 5.9208 -0.9287 40 1 7.1708 6.6075 -0.2983 41 1 9.5873 6.7997 1.0571 42 1 8.0020 6.7735 1.8866 43 1 7.0451 4.3208 2.2289 44 1 8.1215 3.0470 1.5778 45 1 2.2721 2.1232 -1.9977 46 1 0.7282 4.1543 -2.8665 47 1 0.0681 2.6148 -3.4685 48 1 -4.8349 5.8685 -3.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688775607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:44 Heat of formation + Delta-G solvation = -162.921799 kcal Electronic energy + Delta-G solvation = -27586.087691 eV Core-core repulsion = 23572.524338 eV Total energy + Delta-G solvation = -4013.563353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34048 -40.79624 -39.79253 -37.56066 -34.94455 -34.56665 -34.50007 -33.59133 -31.03079 -30.61062 -29.51451 -27.72060 -27.52881 -24.47465 -23.70263 -22.54512 -21.75403 -21.53887 -20.94228 -19.81824 -18.43171 -17.92322 -17.48999 -17.24955 -16.88078 -16.85275 -16.68642 -16.64635 -16.14398 -16.03817 -15.72456 -15.00260 -14.84098 -14.68470 -14.57068 -14.48204 -14.16103 -13.86460 -13.68728 -13.48676 -13.16056 -13.14640 -12.89420 -12.82997 -12.63770 -12.57476 -12.47353 -12.18433 -12.10812 -11.86406 -11.77697 -11.70450 -11.53257 -11.11508 -10.86227 -10.83114 -10.76562 -10.23990 -10.12223 -10.03486 -8.62595 -8.33234 -6.09804 1.29005 1.43955 1.48240 1.57537 1.64993 1.68843 2.11979 2.28071 2.35312 3.00994 3.06099 3.34673 3.53736 3.56801 3.76790 3.88333 3.97179 4.01148 4.05697 4.15045 4.22035 4.34659 4.35167 4.40198 4.45901 4.53608 4.57251 4.59964 4.68796 4.76977 4.84879 4.86468 4.88312 4.93728 4.95324 5.06258 5.13895 5.18687 5.25070 5.39954 5.43246 5.49055 5.55757 5.85761 6.20871 6.49475 6.53808 7.08642 7.22540 7.31269 8.75253 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.002237 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.057717 B =12513.996548 C =14636.704473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.142 3.858 4 H 0.081 0.919 5 C 0.122 3.878 6 N -0.724 5.724 7 C 0.511 3.489 8 O -0.576 6.576 9 C -0.130 4.130 10 C -0.102 4.102 11 H 0.077 0.923 12 C -0.147 4.147 13 C 0.035 3.965 14 O -0.408 6.408 15 C 0.053 3.947 16 N -0.710 5.710 17 C 0.539 3.461 18 O -0.548 6.548 19 C -0.132 4.132 20 S -0.145 6.145 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.994 3.006 26 H -0.264 1.264 27 H -0.281 1.281 28 H -0.261 1.261 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.411 0.589 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.413 0.587 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.519 -2.926 5.823 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.099 0.901 5 C -0.002 4.002 6 N -0.376 5.376 7 C 0.299 3.701 8 O -0.456 6.456 9 C -0.170 4.170 10 C -0.122 4.122 11 H 0.095 0.905 12 C -0.184 4.184 13 C -0.042 4.042 14 O -0.328 6.328 15 C -0.023 4.023 16 N -0.365 5.365 17 C 0.325 3.675 18 O -0.425 6.425 19 C -0.283 4.283 20 S 0.082 5.918 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.816 3.184 26 H -0.189 1.189 27 H -0.206 1.206 28 H -0.186 1.186 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.250 0.750 46 H 0.129 0.871 47 H 0.121 0.879 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.816 -3.646 7.665 24.343 hybrid contribution -0.047 0.690 -2.293 2.395 sum 22.768 -2.956 5.372 23.580 Atomic orbital electron populations 1.21738 0.96433 1.00597 1.01356 1.21863 0.95355 0.95102 1.04025 1.21253 0.93358 0.94457 0.87260 0.90102 1.21573 0.91082 0.83940 1.03648 1.46013 1.07625 1.10120 1.73847 1.21119 0.81833 0.92133 0.75047 1.90704 1.56627 1.47887 1.50362 1.21834 0.95305 0.92946 1.06888 1.22218 0.94584 0.97812 0.97550 0.90493 1.23032 1.01535 0.95515 0.98340 1.23637 1.01215 0.85656 0.93651 1.89133 1.40045 1.23789 1.79787 1.23520 0.88166 0.95435 0.95223 1.45819 1.15724 1.57767 1.17200 1.19852 0.81848 0.77602 0.88190 1.90728 1.51824 1.58909 1.41019 1.23390 1.02233 1.03704 0.99017 1.85537 1.13179 1.71898 1.21166 1.23174 1.04442 1.41974 0.99837 0.90048 1.26075 0.94438 0.95987 1.02573 1.70167 1.05683 1.42130 1.36729 0.85063 0.77710 0.78603 0.77010 1.18875 1.20594 1.18563 0.92540 0.93915 0.94791 0.90320 0.88901 0.90165 0.89650 0.75259 0.85907 0.86714 0.89931 0.87995 0.88149 0.91259 0.92148 0.90181 0.74991 0.87133 0.87929 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.52 71.98 0.61 -3.04 16 2 C -0.12 -2.15 5.61 30.59 0.17 -1.98 16 3 C 0.14 2.44 2.42 44.99 0.11 2.55 16 4 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 5 C 0.12 1.67 5.23 86.38 0.45 2.13 16 6 N -0.72 -9.51 5.39 -463.06 -2.50 -12.01 16 7 C 0.51 8.04 7.63 87.66 0.67 8.70 16 8 O -0.58 -13.40 14.91 -3.03 -0.05 -13.44 16 9 C -0.13 -1.30 4.92 29.85 0.15 -1.15 16 10 C -0.10 -1.38 2.71 -9.78 -0.03 -1.40 16 11 H 0.08 1.28 7.96 -2.38 -0.02 1.26 16 12 C -0.15 -1.41 6.74 31.61 0.21 -1.20 16 13 C 0.03 0.43 7.64 72.48 0.55 0.98 16 14 O -0.41 -8.25 11.65 -148.98 -1.74 -9.99 16 15 C 0.05 0.95 6.30 72.49 0.46 1.40 16 16 N -0.71 -13.89 4.47 -442.54 -1.98 -15.87 16 17 C 0.54 16.75 6.42 87.65 0.56 17.32 16 18 O -0.55 -21.76 13.00 -3.04 -0.04 -21.80 16 19 C -0.13 -4.68 6.16 71.23 0.44 -4.25 16 20 S -0.14 -7.58 20.57 -56.49 -1.16 -8.74 16 21 C -0.55 -29.97 9.50 67.95 0.65 -29.32 16 22 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 23 C 0.01 0.78 5.49 84.86 0.47 1.25 16 24 N -0.91 -54.56 13.22 21.65 0.29 -54.27 16 25 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 26 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 1.22 7.85 -2.39 -0.02 1.20 16 31 H 0.03 1.06 5.65 -2.38 -0.01 1.05 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.41 4.67 8.14 -92.71 -0.75 3.91 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.79 8.01 -2.39 -0.02 0.78 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.57 7.73 -2.38 -0.02 0.55 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.06 0.98 7.78 -2.39 -0.02 0.96 16 44 H 0.08 1.71 7.71 -2.39 -0.02 1.69 16 45 H 0.41 5.86 8.60 -92.71 -0.80 5.06 16 46 H 0.11 3.43 8.14 -2.40 -0.02 3.41 16 47 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 48 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.96 402.04 -0.25 -78.21 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.58 Total: 21.58 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.47 Total: -8.01 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -4.19 Total: -82.14 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.82 Total: -45.23 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Total: -77.96 -0.25 -78.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688775607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.709 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds