Wall clock time and date at job start Wed Apr 1 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47202 * 2 1 4 4 N 1.46496 * 109.46907 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99919 * 90.00334 * 4 3 2 6 6 O 1.21277 * 119.99937 * 179.97438 * 5 4 3 7 7 C 1.50694 * 120.00044 * 359.97438 * 5 4 3 8 8 C 1.53041 * 113.15547 * 179.97438 * 7 5 4 9 9 S 1.81427 * 89.89155 * 211.85272 * 8 7 5 10 10 O 1.42101 * 112.75213 * 136.72927 * 9 8 7 11 11 O 1.42099 * 112.75112 * 280.47174 * 9 8 7 12 12 C 1.53044 * 113.15446 * 79.62522 * 7 5 4 13 13 C 1.46500 * 120.00339 * 269.99872 * 4 3 2 14 14 C 1.53043 * 109.46422 * 240.03145 * 13 4 3 15 15 C 1.53190 * 109.31426 * 178.60167 * 14 13 4 16 16 N 1.46925 * 108.76654 * 54.65318 * 15 14 13 17 17 C 1.36934 * 120.62967 * 126.36432 * 16 15 14 18 18 H 1.08004 * 119.99773 * 331.85466 * 17 16 15 19 19 C 1.38802 * 120.00378 * 151.85950 * 17 16 15 20 20 N 1.31626 * 119.99837 * 343.07194 * 19 17 16 21 21 Si 1.86796 * 120.00463 * 163.06939 * 19 17 16 22 22 H 1.48506 * 109.46965 * 60.00142 * 21 19 17 23 23 H 1.48496 * 109.47499 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47402 * 300.00061 * 21 19 17 25 25 C 1.46929 * 118.73889 * 306.38497 * 16 15 14 26 26 C 1.53041 * 109.45929 * 119.97525 * 13 4 3 27 27 H 1.09000 * 109.46711 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46876 * 299.99960 * 1 2 3 29 29 H 1.08995 * 109.46687 * 60.00010 * 1 2 3 30 30 H 1.09004 * 109.47233 * 239.99853 * 2 1 3 31 31 H 1.09003 * 109.46930 * 120.00205 * 2 1 3 32 32 H 1.08999 * 109.46523 * 60.00111 * 3 2 1 33 33 H 1.08995 * 109.46779 * 299.99744 * 3 2 1 34 34 H 1.08999 * 112.52656 * 309.81506 * 7 5 4 35 35 H 1.08999 * 113.14635 * 327.11374 * 8 7 5 36 36 H 1.08995 * 113.14933 * 96.59066 * 8 7 5 37 37 H 1.08998 * 113.14859 * 263.41156 * 12 7 5 38 38 H 1.09006 * 113.14649 * 32.88885 * 12 7 5 39 39 H 1.08999 * 109.45778 * 0.02562 * 13 4 3 40 40 H 1.09002 * 109.49399 * 298.56765 * 14 13 4 41 41 H 1.08999 * 109.49423 * 58.65942 * 14 13 4 42 42 H 1.09002 * 109.59219 * 294.86600 * 15 14 13 43 43 H 1.08995 * 109.69997 * 174.51024 * 15 14 13 44 44 H 0.97004 * 119.99840 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.58302 * 293.81855 * 25 16 15 46 46 H 1.08998 * 109.70175 * 173.46639 * 25 16 15 47 47 H 1.09000 * 109.49650 * 301.33680 * 26 13 4 48 48 H 1.09000 * 109.49926 * 61.40766 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3921 1.4427 -1.1658 7 6 3.4264 1.4416 -2.4717 8 6 4.3446 1.4422 -3.6960 9 16 3.1090 2.3987 -4.6180 10 8 3.6847 3.4529 -5.3772 11 8 2.0489 1.5931 -5.1144 12 6 2.9058 2.8255 -2.8668 13 6 4.2370 1.4426 1.2696 14 6 5.1163 2.6926 1.3510 15 6 5.8534 2.7071 2.6938 16 7 6.5869 1.4429 2.8440 17 6 7.9285 1.4430 3.1182 18 1 8.5458 2.2678 2.7939 19 6 8.4950 0.3833 3.8129 20 7 7.7283 -0.4434 4.4920 21 14 10.3455 0.1303 3.7842 22 1 11.0178 1.3287 4.3474 23 1 10.6950 -1.0612 4.5986 24 1 10.7951 -0.0773 2.3842 25 6 5.8536 0.1786 2.6940 26 6 5.1162 0.1926 1.3512 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9562 -0.8900 34 1 2.6596 0.6680 -2.5111 35 1 5.2746 1.9871 -3.5339 36 1 4.5104 0.4467 -4.1078 37 1 1.8660 2.9890 -2.5837 38 1 3.5586 3.6369 -2.5449 39 1 3.5282 1.4423 2.0977 40 1 5.8418 2.6806 0.5375 41 1 4.4920 3.5824 1.2692 42 1 5.1329 2.8102 3.5052 43 1 6.5542 3.5415 2.7193 44 1 8.1242 -1.1838 4.9778 45 1 5.1332 0.0755 3.5054 46 1 6.5531 -0.6570 2.7180 47 1 4.4919 -0.6972 1.2697 48 1 5.8414 0.2041 0.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713100708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:50 Heat of formation + Delta-G solvation = -57.917600 kcal Electronic energy + Delta-G solvation = -29911.567439 eV Core-core repulsion = 25902.557409 eV Total energy + Delta-G solvation = -4009.010029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.56546 -37.79542 -37.49706 -36.46463 -36.13935 -35.78406 -33.40369 -32.01322 -30.14966 -29.52295 -27.07351 -26.36227 -25.70855 -23.93266 -22.25976 -21.85862 -21.72954 -19.60621 -19.19639 -18.93949 -17.47619 -16.94401 -16.73471 -16.60907 -16.00746 -15.74972 -15.32345 -14.84562 -14.67646 -14.47316 -13.96831 -13.69292 -13.60758 -13.49770 -13.23724 -13.02919 -12.70886 -12.62959 -12.60401 -12.56624 -12.41405 -12.21171 -11.94379 -11.81757 -11.55117 -11.42628 -11.33105 -11.11375 -10.99701 -10.89316 -10.69852 -10.67313 -10.31398 -10.14551 -10.05753 -9.69519 -9.55065 -9.28198 -8.52389 -8.31127 -6.63384 -5.75336 -3.16778 -0.25712 1.55493 2.59099 2.96926 3.27998 3.42149 3.47112 3.50147 3.67383 3.80343 4.18200 4.46886 4.49287 4.53947 4.67970 4.77772 4.80697 4.95375 5.07804 5.20066 5.32099 5.35339 5.38873 5.45414 5.49285 5.57545 5.61066 5.65341 5.79726 5.82698 5.84721 6.06171 6.13813 6.29828 6.34836 6.51429 6.58674 6.73348 6.81155 6.99504 7.07908 7.37349 7.55309 7.70097 7.83763 8.28913 8.49402 9.25347 9.88720 10.45045 11.33538 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003134 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.383670 B = 8932.467468 C =10072.969777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.103 3.897 4 N -0.605 5.605 5 C 0.535 3.465 6 O -0.510 6.510 7 C -0.098 4.098 8 C -0.576 4.576 9 S 2.413 3.587 10 O -0.922 6.922 11 O -0.913 6.913 12 C -0.593 4.593 13 C 0.160 3.840 14 C -0.147 4.147 15 C 0.151 3.849 16 N -0.589 5.589 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.905 5.905 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.177 3.823 26 C -0.154 4.154 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.015 0.985 43 H 0.055 0.945 44 H 0.253 0.747 45 H 0.015 0.985 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.115 3.751 -14.642 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C -0.021 4.021 4 N -0.337 5.337 5 C 0.319 3.681 6 O -0.384 6.384 7 C -0.121 4.121 8 C -0.705 4.705 9 S 2.594 3.406 10 O -0.919 6.919 11 O -0.910 6.910 12 C -0.721 4.721 13 C 0.058 3.942 14 C -0.187 4.187 15 C 0.024 3.976 16 N -0.312 5.312 17 C -0.379 4.379 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.550 5.550 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.050 3.950 26 C -0.194 4.194 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.175 0.825 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.107 0.893 47 H 0.062 0.938 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.816 3.856 -15.627 23.278 hybrid contribution 1.090 -0.561 1.263 1.760 sum -15.726 3.295 -14.364 21.552 Atomic orbital electron populations 1.21715 0.95102 1.02126 1.01888 1.22033 0.96098 0.97253 1.03212 1.21762 0.80071 0.96997 1.03227 1.48273 1.06137 1.72878 1.06419 1.19553 0.87618 0.76965 0.83949 1.90744 1.13220 1.47929 1.86528 1.21667 0.98453 0.96863 0.95167 1.30851 1.15828 1.16334 1.07532 1.08356 0.78077 0.77367 0.76823 1.93658 1.76612 1.52802 1.68804 1.93722 1.51473 1.67738 1.78079 1.31007 1.10389 1.04046 1.26675 1.21160 0.93144 0.97345 0.82515 1.22459 0.99221 0.94992 1.02066 1.20833 0.94176 0.90346 0.92290 1.44007 1.05862 0.99388 1.81931 1.19140 0.83262 1.06604 1.28846 0.91829 1.25012 0.97795 0.99922 0.96892 1.70020 1.34040 1.18265 1.32663 0.86371 0.85574 0.77284 0.77576 1.20907 1.21666 1.21011 1.20718 0.94099 0.90594 0.89583 1.22640 0.99007 0.94374 1.03361 0.92363 0.92458 0.92623 0.91801 0.90943 0.90097 0.90550 0.85097 0.82547 0.85229 0.85067 0.83181 0.90482 0.89963 0.93636 0.96729 0.92643 0.93669 0.96674 0.89346 0.93779 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.15 -1.25 6.20 -26.73 -0.17 -1.42 16 3 C 0.10 0.92 5.08 -4.04 -0.02 0.90 16 4 N -0.60 -7.82 2.42 -166.07 -0.40 -8.23 16 5 C 0.53 7.28 6.60 -10.99 -0.07 7.20 16 6 O -0.51 -9.21 12.18 5.56 0.07 -9.14 16 7 C -0.10 -0.86 2.54 -91.73 -0.23 -1.09 16 8 C -0.58 -4.52 7.18 37.18 0.27 -4.26 16 9 S 2.41 16.12 7.55 -107.50 -0.81 15.31 16 10 O -0.92 -9.47 18.18 -57.30 -1.04 -10.52 16 11 O -0.91 -8.32 18.18 -57.30 -1.04 -9.36 16 12 C -0.59 -3.64 6.82 37.18 0.25 -3.39 16 13 C 0.16 2.64 2.51 -67.89 -0.17 2.47 16 14 C -0.15 -2.66 5.27 -26.61 -0.14 -2.80 16 15 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 16 N -0.59 -15.07 2.99 -172.32 -0.52 -15.58 16 17 C -0.25 -7.01 9.58 -15.06 -0.14 -7.16 16 18 H 0.06 1.77 7.89 -52.48 -0.41 1.36 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 20 N -0.91 -26.51 11.19 55.49 0.62 -25.89 16 21 Si 0.90 22.21 29.59 -169.99 -5.03 17.18 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.18 4.26 5.30 -3.71 -0.02 4.24 16 26 C -0.15 -3.05 5.27 -26.61 -0.14 -3.19 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.54 7.22 -51.93 -0.38 0.16 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 33 H 0.08 0.50 5.33 -51.93 -0.28 0.22 16 34 H 0.13 0.87 6.92 -51.93 -0.36 0.51 16 35 H 0.16 1.42 7.57 -51.93 -0.39 1.02 16 36 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.13 0.46 7.17 -51.93 -0.37 0.09 16 38 H 0.15 0.96 8.11 -51.93 -0.42 0.53 16 39 H 0.08 1.21 7.79 -51.93 -0.40 0.81 16 40 H 0.08 1.69 6.21 -51.93 -0.32 1.37 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 47 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.76 6.21 -51.93 -0.32 1.44 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -37.25 381.23 -10.48 -47.73 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.74 Total: -1.29 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.33 Total: -5.97 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.30 Total: -49.70 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -2.02 Total: -29.02 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Atomic # 16 Polarization: 16.12 SS G_CDS: -0.81 Total: 15.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.25 -10.48 -47.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713100708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.189 kcal (2) G-P(sol) polarization free energy of solvation -37.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds