Wall clock time and date at job start Wed Apr 1 2020 03:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47202 * 2 1 4 4 N 1.46496 * 109.46907 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99919 * 90.00334 * 4 3 2 6 6 O 1.21277 * 119.99937 * 179.97438 * 5 4 3 7 7 C 1.50694 * 120.00044 * 359.97438 * 5 4 3 8 8 C 1.53041 * 113.15547 * 179.97438 * 7 5 4 9 9 S 1.81427 * 89.89155 * 211.85272 * 8 7 5 10 10 O 1.42101 * 112.75213 * 136.72927 * 9 8 7 11 11 O 1.42099 * 112.75112 * 280.47174 * 9 8 7 12 12 C 1.53044 * 113.15446 * 79.62522 * 7 5 4 13 13 C 1.46500 * 120.00339 * 269.99872 * 4 3 2 14 14 C 1.53043 * 109.46422 * 240.03145 * 13 4 3 15 15 C 1.53190 * 109.31426 * 178.60167 * 14 13 4 16 16 N 1.46925 * 108.76654 * 54.65318 * 15 14 13 17 17 C 1.36934 * 120.62967 * 126.36432 * 16 15 14 18 18 H 1.08004 * 119.99773 * 331.85466 * 17 16 15 19 19 C 1.38802 * 120.00378 * 151.85950 * 17 16 15 20 20 N 1.31626 * 119.99837 * 343.07194 * 19 17 16 21 21 Si 1.86796 * 120.00463 * 163.06939 * 19 17 16 22 22 H 1.48506 * 109.46965 * 60.00142 * 21 19 17 23 23 H 1.48496 * 109.47499 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47402 * 300.00061 * 21 19 17 25 25 C 1.46929 * 118.73889 * 306.38497 * 16 15 14 26 26 C 1.53041 * 109.45929 * 119.97525 * 13 4 3 27 27 H 1.09000 * 109.46711 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46876 * 299.99960 * 1 2 3 29 29 H 1.08995 * 109.46687 * 60.00010 * 1 2 3 30 30 H 1.09004 * 109.47233 * 239.99853 * 2 1 3 31 31 H 1.09003 * 109.46930 * 120.00205 * 2 1 3 32 32 H 1.08999 * 109.46523 * 60.00111 * 3 2 1 33 33 H 1.08995 * 109.46779 * 299.99744 * 3 2 1 34 34 H 1.08999 * 112.52656 * 309.81506 * 7 5 4 35 35 H 1.08999 * 113.14635 * 327.11374 * 8 7 5 36 36 H 1.08995 * 113.14933 * 96.59066 * 8 7 5 37 37 H 1.08998 * 113.14859 * 263.41156 * 12 7 5 38 38 H 1.09006 * 113.14649 * 32.88885 * 12 7 5 39 39 H 1.08999 * 109.45778 * 0.02562 * 13 4 3 40 40 H 1.09002 * 109.49399 * 298.56765 * 14 13 4 41 41 H 1.08999 * 109.49423 * 58.65942 * 14 13 4 42 42 H 1.09002 * 109.59219 * 294.86600 * 15 14 13 43 43 H 1.08995 * 109.69997 * 174.51024 * 15 14 13 44 44 H 0.97004 * 119.99840 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.58302 * 293.81855 * 25 16 15 46 46 H 1.08998 * 109.70175 * 173.46639 * 25 16 15 47 47 H 1.09000 * 109.49650 * 301.33680 * 26 13 4 48 48 H 1.09000 * 109.49926 * 61.40766 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3921 1.4427 -1.1658 7 6 3.4264 1.4416 -2.4717 8 6 4.3446 1.4422 -3.6960 9 16 3.1090 2.3987 -4.6180 10 8 3.6847 3.4529 -5.3772 11 8 2.0489 1.5931 -5.1144 12 6 2.9058 2.8255 -2.8668 13 6 4.2370 1.4426 1.2696 14 6 5.1163 2.6926 1.3510 15 6 5.8534 2.7071 2.6938 16 7 6.5869 1.4429 2.8440 17 6 7.9285 1.4430 3.1182 18 1 8.5458 2.2678 2.7939 19 6 8.4950 0.3833 3.8129 20 7 7.7283 -0.4434 4.4920 21 14 10.3455 0.1303 3.7842 22 1 11.0178 1.3287 4.3474 23 1 10.6950 -1.0612 4.5986 24 1 10.7951 -0.0773 2.3842 25 6 5.8536 0.1786 2.6940 26 6 5.1162 0.1926 1.3512 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9562 -0.8900 34 1 2.6596 0.6680 -2.5111 35 1 5.2746 1.9871 -3.5339 36 1 4.5104 0.4467 -4.1078 37 1 1.8660 2.9890 -2.5837 38 1 3.5586 3.6369 -2.5449 39 1 3.5282 1.4423 2.0977 40 1 5.8418 2.6806 0.5375 41 1 4.4920 3.5824 1.2692 42 1 5.1329 2.8102 3.5052 43 1 6.5542 3.5415 2.7193 44 1 8.1242 -1.1838 4.9778 45 1 5.1332 0.0755 3.5054 46 1 6.5531 -0.6570 2.7180 47 1 4.4919 -0.6972 1.2697 48 1 5.8414 0.2041 0.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713100708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:46 Heat of formation + Delta-G solvation = -84.789939 kcal Electronic energy + Delta-G solvation = -29912.732711 eV Core-core repulsion = 25902.557409 eV Total energy + Delta-G solvation = -4010.175301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -41.62429 -39.02538 -38.37276 -37.21727 -37.16927 -36.73466 -34.81322 -33.42025 -31.82724 -31.25560 -27.69263 -27.33722 -27.04617 -25.28341 -23.89353 -23.28491 -22.48155 -21.14939 -19.95037 -19.77719 -18.94845 -18.05702 -17.63072 -17.29039 -17.09108 -16.77919 -16.54466 -16.16416 -15.66906 -15.45306 -15.38250 -15.25032 -14.88565 -14.72753 -14.36311 -14.14107 -14.04766 -13.90194 -13.33388 -13.31814 -13.29354 -13.14268 -13.02588 -12.83482 -12.70449 -12.63207 -12.59590 -12.52337 -12.21109 -12.18384 -12.01873 -11.97097 -11.80220 -11.58974 -11.39507 -11.33338 -11.17975 -10.61739 -10.43474 -9.55359 -8.69718 -7.90282 -5.34475 -0.84542 0.98978 1.42497 1.45960 1.52526 1.62881 1.98522 2.48818 2.71498 3.05343 3.15293 3.24930 3.45792 3.67195 3.72207 3.92553 4.02850 4.05155 4.07920 4.24156 4.28145 4.35051 4.41611 4.49154 4.52550 4.62576 4.67833 4.74708 4.82242 4.85230 4.87481 4.94358 5.00305 5.01433 5.08163 5.15808 5.26986 5.31677 5.42959 5.49263 5.51370 5.61339 5.66625 5.79006 6.37133 6.52431 7.12870 7.25897 7.84363 8.35045 9.16049 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003134 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.383670 B = 8932.467468 C =10072.969777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.096 3.904 4 N -0.601 5.601 5 C 0.527 3.473 6 O -0.563 6.563 7 C -0.102 4.102 8 C -0.590 4.590 9 S 2.463 3.537 10 O -0.956 6.956 11 O -0.929 6.929 12 C -0.580 4.580 13 C 0.169 3.831 14 C -0.133 4.133 15 C 0.146 3.854 16 N -0.610 5.610 17 C -0.265 4.265 18 H 0.059 0.941 19 C -0.048 4.048 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.185 3.815 26 C -0.137 4.137 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.170 0.830 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.050 0.950 44 H 0.251 0.749 45 H 0.004 0.996 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.780 4.756 -15.860 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C -0.025 4.025 4 N -0.332 5.332 5 C 0.314 3.686 6 O -0.441 6.441 7 C -0.125 4.125 8 C -0.718 4.718 9 S 2.645 3.355 10 O -0.953 6.953 11 O -0.927 6.927 12 C -0.709 4.709 13 C 0.066 3.934 14 C -0.173 4.173 15 C 0.020 3.980 16 N -0.333 5.333 17 C -0.395 4.395 18 H 0.077 0.923 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.792 3.208 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.058 3.942 26 C -0.177 4.177 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.188 0.812 38 H 0.169 0.831 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.528 4.876 -16.876 26.266 hybrid contribution 1.892 -0.874 1.658 2.663 sum -17.636 4.003 -15.217 23.635 Atomic orbital electron populations 1.21692 0.93325 1.02433 1.03001 1.22011 0.97568 0.96745 1.02222 1.22124 0.77092 0.97777 1.05549 1.48218 1.07819 1.72340 1.04852 1.20355 0.87297 0.75513 0.85416 1.90736 1.15818 1.50159 1.87420 1.21807 0.98907 0.99482 0.92296 1.30969 1.15740 1.17328 1.07755 1.06900 0.76498 0.75796 0.76318 1.93612 1.77343 1.54063 1.70314 1.93695 1.51864 1.68224 1.78887 1.30933 1.12733 1.02420 1.24778 1.20807 0.93015 0.94517 0.85110 1.22241 0.99009 0.97289 0.98742 1.20990 0.94210 0.88316 0.94445 1.44256 1.05625 1.01144 1.82285 1.19424 0.84897 1.06685 1.28534 0.92305 1.25735 1.01848 0.99835 0.96907 1.70158 1.35541 1.18623 1.33474 0.85395 0.80781 0.77349 0.77277 1.19845 1.21490 1.21107 1.20483 0.93071 0.89050 0.91567 1.22344 0.98796 0.97199 0.99391 0.92556 0.92097 0.90754 0.91726 0.93190 0.88887 0.87152 0.82278 0.84160 0.84178 0.81213 0.83051 0.88938 0.92628 0.90294 0.95783 0.93181 0.94043 0.97779 0.93339 0.92362 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 75. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.15 -2.04 6.20 30.59 0.19 -1.85 16 3 C 0.10 1.32 5.08 86.38 0.44 1.76 16 4 N -0.60 -14.13 2.42 -797.70 -1.93 -16.06 16 5 C 0.53 13.53 6.60 87.65 0.58 14.11 16 6 O -0.56 -20.62 12.18 -3.02 -0.04 -20.66 16 7 C -0.10 -1.49 2.54 -11.51 -0.03 -1.52 16 8 C -0.59 -8.45 7.18 72.00 0.52 -7.93 16 9 S 2.46 26.85 7.55 -56.49 -0.43 26.43 16 10 O -0.96 -18.19 18.18 -127.88 -2.32 -20.52 16 11 O -0.93 -14.10 18.18 -127.88 -2.32 -16.42 16 12 C -0.58 -4.84 6.82 72.00 0.49 -4.35 16 13 C 0.17 5.37 2.51 45.02 0.11 5.48 16 14 C -0.13 -4.69 5.27 30.67 0.16 -4.53 16 15 C 0.15 6.25 6.52 86.36 0.56 6.81 16 16 N -0.61 -32.11 2.99 -699.11 -2.09 -34.21 16 17 C -0.27 -15.42 9.58 84.03 0.81 -14.61 16 18 H 0.06 3.39 7.89 -2.91 -0.02 3.36 16 19 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 20 N -0.93 -56.42 11.19 21.65 0.24 -56.18 16 21 Si 0.96 46.81 29.59 68.60 2.03 48.84 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 25 C 0.18 9.26 5.30 86.36 0.46 9.72 16 26 C -0.14 -5.55 5.27 30.67 0.16 -5.38 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.89 7.22 -2.38 -0.02 0.87 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.13 7.92 -2.39 -0.02 1.11 16 33 H 0.11 0.80 5.33 -2.39 -0.01 0.78 16 34 H 0.16 1.44 6.92 -2.39 -0.02 1.42 16 35 H 0.14 2.56 7.57 -2.39 -0.02 2.54 16 36 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.17 0.13 7.17 -2.39 -0.02 0.12 16 38 H 0.15 1.42 8.11 -2.38 -0.02 1.40 16 39 H 0.09 2.70 7.79 -2.39 -0.02 2.68 16 40 H 0.05 2.31 6.21 -2.39 -0.01 2.29 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 47 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 2.34 6.21 -2.39 -0.01 2.33 16 Total: -1.00 -84.73 381.23 -0.34 -85.07 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.95 Total: 9.05 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.58 Total: -5.34 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.78 Total: -106.45 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -4.69 Total: -57.59 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 26.85 SS G_CDS: -0.43 Total: 26.43 kcal Total: -84.73 -0.34 -85.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713100708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.279 kcal (2) G-P(sol) polarization free energy of solvation -84.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds