Wall clock time and date at job start Wed Apr 1 2020 04:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99456 * 2 1 4 4 O 1.42905 * 109.47130 * 134.99957 * 3 2 1 5 5 C 1.42902 * 113.99822 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46687 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47217 * 64.99907 * 6 5 4 8 8 C 1.46854 * 110.99958 * 65.78691 * 7 6 5 9 9 C 1.53039 * 109.52227 * 185.83752 * 8 7 6 10 10 C 1.53126 * 109.28009 * 300.82107 * 9 8 7 11 11 H 1.09001 * 109.52183 * 297.75176 * 10 9 8 12 12 N 1.46495 * 109.52288 * 177.61873 * 10 9 8 13 13 C 1.34777 * 119.99432 * 85.00378 * 12 10 9 14 14 O 1.21284 * 120.00242 * 0.02562 * 13 12 10 15 15 C 1.50699 * 119.99930 * 179.97438 * 13 12 10 16 16 S 1.81002 * 109.47504 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00157 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00203 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99977 * 180.02562 * 17 16 15 20 20 N 1.31638 * 119.99889 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00183 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47000 * 90.00012 * 21 19 17 23 23 H 1.48500 * 109.47325 * 209.99842 * 21 19 17 24 24 H 1.48501 * 109.47108 * 330.00016 * 21 19 17 25 25 C 1.53099 * 109.15071 * 57.65227 * 10 9 8 26 26 H 1.09007 * 109.48839 * 182.39531 * 25 10 9 27 27 O 1.42902 * 109.50413 * 62.29195 * 25 10 9 28 28 C 1.46847 * 110.99897 * 189.99553 * 7 6 5 29 29 H 1.08004 * 119.99351 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00676 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.00530 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47488 * 14.99885 * 3 2 1 33 33 H 1.08996 * 109.47081 * 254.99771 * 3 2 1 34 34 H 1.08999 * 109.46999 * 59.99880 * 5 4 3 35 35 H 1.09004 * 109.46740 * 300.00056 * 5 4 3 36 36 H 1.08994 * 109.47287 * 304.99702 * 6 5 4 37 37 H 1.09006 * 109.46660 * 184.99879 * 6 5 4 38 38 H 1.08993 * 109.46229 * 305.85774 * 8 7 6 39 39 H 1.09008 * 109.45803 * 65.83386 * 8 7 6 40 40 H 1.08994 * 109.50227 * 60.75933 * 9 8 7 41 41 H 1.08998 * 109.50241 * 180.83988 * 9 8 7 42 42 H 0.96996 * 120.00579 * 264.99966 * 12 10 9 43 43 H 1.09004 * 109.47333 * 299.99918 * 15 13 12 44 44 H 1.09001 * 109.47487 * 59.99833 * 15 13 12 45 45 H 0.96999 * 119.99394 * 180.02562 * 20 19 17 46 46 H 0.96701 * 113.99873 * 180.17758 * 27 25 10 47 47 H 1.09002 * 109.46481 * 294.17890 * 28 7 6 48 48 H 1.08994 * 109.46283 * 54.15743 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2415 0.9527 5 6 3.9082 2.4352 1.0320 6 6 5.0111 2.2540 2.0769 7 7 5.9419 1.2090 1.6304 8 6 6.6635 1.6283 0.4221 9 6 7.5124 0.4651 -0.0961 10 6 8.5033 0.0389 0.9907 11 1 9.1765 0.8664 1.2146 12 7 9.2800 -1.1111 0.5213 13 6 10.3840 -0.9182 -0.2274 14 8 10.7346 0.2074 -0.5120 15 6 11.1834 -2.1011 -0.7098 16 16 12.5945 -1.5194 -1.6828 17 6 13.3314 -3.0629 -2.1060 18 1 12.8856 -3.9856 -1.7652 19 6 14.4849 -3.0929 -2.8774 20 7 15.0279 -1.9682 -3.2933 21 14 15.2658 -4.7292 -3.3267 22 1 14.6940 -5.2153 -4.6082 23 1 16.7329 -4.5536 -3.4745 24 1 14.9912 -5.7196 -2.2549 25 6 7.7285 -0.3464 2.2537 26 1 8.4305 -0.6101 3.0447 27 8 6.8835 -1.4641 1.9727 28 6 6.8733 0.8401 2.7040 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3854 2.1161 0.2659 33 1 2.4754 1.4869 -0.9926 34 1 3.2686 3.2698 1.3191 35 1 4.3585 2.6398 0.0607 36 1 4.5661 1.9620 3.0281 37 1 5.5512 3.1926 2.2015 38 1 5.9473 1.9248 -0.3441 39 1 7.3109 2.4723 0.6602 40 1 6.8645 -0.3746 -0.3473 41 1 8.0593 0.7812 -0.9844 42 1 8.9998 -2.0113 0.7493 43 1 11.5427 -2.6708 0.1472 44 1 10.5524 -2.7374 -1.3303 45 1 15.8338 -1.9892 -3.8327 46 1 6.3596 -1.7611 2.7293 47 1 7.5196 1.6880 2.9314 48 1 6.3096 0.5640 3.5950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099692549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:32 Heat of formation + Delta-G solvation = -103.359728 kcal Electronic energy + Delta-G solvation = -27721.778200 eV Core-core repulsion = 23710.797653 eV Total energy + Delta-G solvation = -4010.980548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21538 -38.82050 -38.13417 -36.23792 -34.59190 -34.08768 -32.39911 -31.91378 -30.41162 -29.54926 -28.00173 -26.04928 -25.45752 -24.11290 -23.45295 -21.69008 -20.24846 -20.20288 -20.06283 -17.83334 -17.37687 -17.09441 -16.83705 -16.25733 -16.14750 -15.80470 -15.35158 -15.06485 -14.83702 -14.77690 -14.62143 -14.21729 -14.02991 -13.94745 -13.27571 -13.10046 -13.04876 -12.78606 -12.62229 -12.52484 -12.37796 -12.05629 -11.97096 -11.56397 -11.44107 -11.23730 -11.08220 -11.03527 -10.99223 -10.75249 -10.61584 -10.16545 -10.06267 -9.77915 -9.63593 -9.32141 -9.04008 -8.77330 -8.50976 -8.19899 -6.46328 -6.18917 -3.88892 1.79841 3.07182 3.15127 3.24576 3.30045 3.34442 3.42263 3.51777 3.76261 4.15191 4.23524 4.41291 4.51592 4.64610 4.71554 4.75755 4.79105 4.86177 4.98500 5.03172 5.05300 5.13778 5.16167 5.16655 5.17899 5.21495 5.31106 5.38673 5.44263 5.50262 5.53269 5.57437 5.76553 5.79932 5.95663 5.99530 6.20573 6.20793 6.27667 6.35525 6.71962 6.75685 6.79837 6.96941 7.52954 7.62749 7.84748 8.38389 8.69124 9.26517 10.88518 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.001885 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.040651 B =14846.672216 C =15383.521484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C 0.087 3.913 4 O -0.365 6.365 5 C 0.065 3.935 6 C 0.056 3.944 7 N -0.517 5.517 8 C 0.056 3.944 9 C -0.123 4.123 10 C 0.157 3.843 11 H 0.092 0.908 12 N -0.728 5.728 13 C 0.532 3.468 14 O -0.522 6.522 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.105 3.895 26 H 0.064 0.936 27 O -0.546 6.546 28 C 0.027 3.973 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.404 0.596 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.376 0.624 47 H 0.043 0.957 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.313 7.263 13.548 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.163 4.163 3 C 0.010 3.990 4 O -0.284 6.284 5 C -0.012 4.012 6 C -0.071 4.071 7 N -0.242 5.242 8 C -0.072 4.072 9 C -0.162 4.162 10 C 0.052 3.948 11 H 0.110 0.890 12 N -0.381 5.381 13 C 0.319 3.681 14 O -0.397 6.397 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C 0.044 3.956 26 H 0.082 0.918 27 O -0.351 6.351 28 C -0.102 4.102 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.239 0.761 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.223 0.777 47 H 0.061 0.939 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.530 8.720 12.372 30.545 hybrid contribution 0.103 -1.808 0.728 1.952 sum -26.427 6.913 13.100 30.295 Atomic orbital electron populations 1.23817 0.95597 1.02139 1.00811 1.22769 0.95531 0.98428 0.99551 1.21517 0.89045 0.95613 0.92810 1.88035 1.43972 1.36550 1.59819 1.22551 0.92326 0.87307 0.98989 1.22115 0.92945 0.93613 0.98475 1.61824 1.18194 1.39671 1.04542 1.22142 0.96034 0.96413 0.92571 1.21902 0.97191 0.98706 0.98402 1.20910 0.91682 0.89804 0.92453 0.88987 1.45950 1.27282 1.09656 1.55238 1.20329 0.79811 0.90831 0.77175 1.90685 1.68714 1.24785 1.55486 1.23529 1.03150 0.99195 1.04473 1.85355 1.22936 1.11677 1.63461 1.22879 1.13836 0.92867 1.38699 0.90927 1.24993 0.95978 0.97556 0.95092 1.70026 1.20311 1.25964 1.34058 0.86168 0.78254 0.82198 0.78878 1.20281 1.20780 1.19702 1.22047 0.90823 0.86240 0.96443 0.91796 1.86527 1.59670 1.48078 1.40808 1.22775 0.94892 0.97977 0.94558 0.87845 0.88626 0.86385 0.93269 0.92496 0.93168 0.93020 0.89900 0.93344 0.90405 0.94818 0.89931 0.90764 0.76142 0.89288 0.89204 0.92235 0.77668 0.93883 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 14.31 29.01 0.42 -0.74 16 2 C -0.14 -1.11 9.89 -36.02 -0.36 -1.47 16 3 C 0.09 0.67 6.35 36.01 0.23 0.90 16 4 O -0.36 -3.51 10.27 -35.23 -0.36 -3.87 16 5 C 0.07 0.49 6.00 37.16 0.22 0.71 16 6 C 0.06 0.42 5.34 -3.82 -0.02 0.40 16 7 N -0.52 -4.72 4.49 -234.67 -1.05 -5.77 16 8 C 0.06 0.58 5.30 -3.83 -0.02 0.56 16 9 C -0.12 -1.56 5.52 -26.65 -0.15 -1.71 16 10 C 0.16 1.99 2.30 -67.82 -0.16 1.83 16 11 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 12 N -0.73 -10.56 5.05 -53.70 -0.27 -10.83 16 13 C 0.53 10.24 7.81 -10.99 -0.09 10.16 16 14 O -0.52 -11.94 15.53 5.55 0.09 -11.85 16 15 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 21 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.10 0.98 3.42 -26.66 -0.09 0.89 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 O -0.55 -5.17 12.06 -35.23 -0.42 -5.60 16 28 C 0.03 0.22 5.12 -3.84 -0.02 0.20 16 29 H 0.10 0.54 8.06 -52.48 -0.42 0.11 16 30 H 0.10 0.49 7.90 -52.49 -0.41 0.08 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.05 0.31 7.86 -51.93 -0.41 -0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.39 6.22 -51.93 -0.32 0.06 16 36 H 0.08 0.58 7.99 -51.93 -0.41 0.16 16 37 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 38 H 0.08 0.76 6.12 -51.93 -0.32 0.44 16 39 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 40 H 0.08 1.14 7.80 -51.93 -0.40 0.73 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.40 5.14 8.13 -40.82 -0.33 4.80 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.38 2.21 9.08 45.56 0.41 2.62 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -35.61 406.77 -9.21 -44.82 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.20 Total: 4.31 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.39 Total: -4.40 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.59 Total: -42.29 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.70 Total: -21.32 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.61 -9.21 -44.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099692549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.538 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds