Wall clock time and date at job start Wed Apr 1 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99874 * 2 1 4 4 C 1.52997 * 109.47055 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47192 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00155 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99822 * 180.02562 * 5 4 3 8 8 C 1.46508 * 119.99837 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45675 * 325.03037 * 8 7 5 10 10 C 1.53041 * 109.45628 * 84.99710 * 8 7 5 11 11 C 1.53190 * 109.31290 * 58.65754 * 10 8 7 12 12 N 1.46925 * 108.77783 * 54.63397 * 11 10 8 13 13 C 1.34778 * 120.63324 * 126.36561 * 12 11 10 14 14 O 1.21282 * 119.99686 * 174.19564 * 13 12 11 15 15 C 1.50697 * 120.00024 * 354.20232 * 13 12 11 16 16 S 1.80995 * 109.47213 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00044 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99801 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99839 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99687 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47068 * 269.99389 * 21 19 17 23 23 H 1.48496 * 109.47499 * 29.99688 * 21 19 17 24 24 H 1.48498 * 109.47119 * 149.99567 * 21 19 17 25 25 C 1.46930 * 118.73528 * 306.64173 * 12 11 10 26 26 H 1.08992 * 109.58743 * 293.56915 * 25 12 11 27 27 C 1.53001 * 109.58277 * 173.14143 * 25 12 11 28 28 C 1.52760 * 109.00765 * 53.31020 * 25 12 11 29 29 H 1.08996 * 109.47243 * 60.00069 * 1 2 3 30 30 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47093 * 300.00308 * 1 2 3 32 32 H 1.08998 * 109.47125 * 59.99918 * 3 2 1 33 33 H 1.08998 * 109.46592 * 299.99709 * 3 2 1 34 34 H 1.09000 * 109.47181 * 59.99441 * 4 3 2 35 35 H 1.09000 * 109.47307 * 300.00132 * 4 3 2 36 36 H 0.96995 * 120.00254 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.50010 * 298.69996 * 10 8 7 38 38 H 1.09006 * 109.52310 * 178.62605 * 10 8 7 39 39 H 1.08998 * 109.59052 * 294.84147 * 11 10 8 40 40 H 1.09006 * 109.58543 * 174.41671 * 11 10 8 41 41 H 1.09005 * 109.46849 * 59.99587 * 15 13 12 42 42 H 1.08998 * 109.47101 * 300.00313 * 15 13 12 43 43 H 0.96991 * 120.00382 * 0.02562 * 20 19 17 44 44 H 1.09003 * 109.46991 * 65.80486 * 27 25 12 45 45 H 1.09000 * 109.46877 * 185.80035 * 27 25 12 46 46 H 1.08990 * 109.47621 * 305.80169 * 27 25 12 47 47 H 1.08996 * 109.56543 * 185.54890 * 28 25 12 48 48 H 1.09005 * 109.38985 * 65.51313 * 28 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5614 0.0000 6 8 3.4355 3.5426 -0.0013 7 7 5.4888 2.7022 -0.0001 8 6 6.0847 4.0406 -0.0013 9 1 5.4630 4.7143 -0.5909 10 6 6.1770 4.5588 1.4358 11 6 7.0229 3.5915 2.2697 12 7 8.3226 3.4096 1.6092 13 6 9.4709 3.6148 2.2844 14 8 10.5354 3.3605 1.7618 15 6 9.4320 4.1599 3.6888 16 16 11.1205 4.3211 4.3204 17 6 10.7861 4.9588 5.9286 18 1 9.7663 5.1298 6.2404 19 6 11.8334 5.2424 6.7943 20 7 13.0763 5.0345 6.4140 21 14 11.4788 5.9178 8.4994 22 1 11.4480 7.4017 8.4475 23 1 10.1641 5.4116 8.9689 24 1 12.5424 5.4773 9.4373 25 6 8.3468 3.0057 0.1967 26 1 7.9472 1.9964 0.0984 27 6 9.7853 3.0438 -0.3231 28 6 7.4861 3.9742 -0.6125 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8574 0.6436 -0.8891 35 1 3.8567 0.6440 0.8908 36 1 6.0589 1.9175 0.0006 37 1 5.1764 4.6280 1.8626 38 1 6.6426 5.5444 1.4384 39 1 6.5132 2.6309 2.3440 40 1 7.1746 4.0050 3.2668 41 1 8.8689 3.4792 4.3273 42 1 8.9499 5.1375 3.6858 43 1 13.2603 4.6834 5.5288 44 1 10.3772 2.2858 0.1899 45 1 9.7898 2.8445 -1.3947 46 1 10.2137 4.0282 -0.1348 47 1 7.4173 3.6273 -1.6435 48 1 7.9394 4.9653 -0.5916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074757921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:10 Heat of formation + Delta-G solvation = -115.781634 kcal Electronic energy + Delta-G solvation = -28237.989536 eV Core-core repulsion = 24226.470334 eV Total energy + Delta-G solvation = -4011.519202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99498 -39.82470 -38.25575 -37.43990 -34.53896 -33.33416 -32.59757 -32.54406 -31.07980 -29.18055 -27.47052 -27.00461 -24.94364 -24.80072 -24.03111 -22.41895 -21.29315 -20.48394 -18.94559 -18.15333 -17.90213 -16.79700 -16.64618 -16.47837 -16.26243 -16.11916 -15.54422 -15.42016 -15.06090 -14.54941 -14.26005 -14.16598 -13.93017 -13.88037 -13.80837 -13.33092 -13.23514 -12.80745 -12.45948 -12.36241 -12.35438 -12.26924 -11.93394 -11.90182 -11.74720 -11.73415 -11.63098 -11.25017 -11.23497 -10.95599 -10.92754 -10.25568 -10.20925 -10.12772 -9.59246 -9.47403 -9.03383 -8.86907 -8.57463 -8.24353 -6.69612 -6.64419 -4.02429 2.23872 2.57541 2.75069 2.90095 3.29820 3.36929 3.40198 3.49133 3.54448 4.21300 4.25386 4.34909 4.43950 4.56558 4.61632 4.65980 4.74906 4.81368 4.91907 4.93274 4.95158 5.04210 5.09801 5.14115 5.20198 5.23954 5.31934 5.35613 5.38189 5.42129 5.49117 5.58848 5.65280 5.67285 5.71629 5.75307 5.80806 5.96796 6.12662 6.15539 6.37826 6.66188 6.70566 7.06864 7.43840 7.80851 7.90090 8.44172 8.47987 9.24613 10.79558 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.002210 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.990637 B =12667.949058 C =13847.429670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.541 6.541 7 N -0.723 5.723 8 C 0.147 3.853 9 H 0.092 0.908 10 C -0.147 4.147 11 C 0.110 3.890 12 N -0.617 5.617 13 C 0.535 3.465 14 O -0.508 6.508 15 C -0.131 4.131 16 S -0.116 6.116 17 C -0.607 4.607 18 H 0.065 0.935 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 1.086 2.914 22 H -0.284 1.284 23 H -0.287 1.287 24 H -0.280 1.280 25 C 0.147 3.853 26 H 0.064 0.936 27 C -0.140 4.140 28 C -0.140 4.140 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.401 0.599 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.278 0.722 44 H 0.083 0.917 45 H 0.042 0.958 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.255 -7.655 -16.085 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.182 4.182 5 C 0.306 3.694 6 O -0.418 6.418 7 N -0.376 5.376 8 C 0.043 3.957 9 H 0.110 0.890 10 C -0.186 4.186 11 C -0.014 4.014 12 N -0.354 5.354 13 C 0.323 3.677 14 O -0.382 6.382 15 C -0.282 4.282 16 S 0.110 5.890 17 C -0.755 4.755 18 H 0.084 0.916 19 C -0.175 4.175 20 N -0.518 5.518 21 Si 0.912 3.088 22 H -0.210 1.210 23 H -0.213 1.213 24 H -0.205 1.205 25 C 0.044 3.956 26 H 0.081 0.919 27 C -0.197 4.197 28 C -0.179 4.179 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.326 -6.990 -15.473 26.484 hybrid contribution -2.196 -0.261 -0.623 2.298 sum -22.522 -7.251 -16.096 28.617 Atomic orbital electron populations 1.22742 0.80460 1.02838 1.00260 1.87805 1.20180 1.27947 1.95580 1.22149 0.91793 0.84298 1.01814 1.21489 0.95661 0.95192 1.05869 1.20393 0.82342 0.91065 0.75564 1.90725 1.60939 1.40754 1.49405 1.46163 1.06555 1.09483 1.75413 1.20943 0.93984 0.84032 0.96750 0.88953 1.22320 1.01035 0.99857 0.95434 1.21679 0.83276 0.99376 0.97022 1.48155 1.05923 1.70317 1.10975 1.20257 0.83146 0.76963 0.87310 1.90739 1.29819 1.49498 1.68165 1.23399 1.06048 1.03437 0.95279 1.84780 1.01764 1.85407 1.17025 1.23722 0.97901 1.53949 0.99946 0.91637 1.26048 0.92069 0.94879 1.04520 1.70768 1.19493 1.39433 1.22137 0.83298 0.75446 0.76383 0.73637 1.21044 1.21297 1.20494 1.21047 0.97800 0.96407 0.80395 0.91852 1.22222 0.93780 1.05278 0.98462 1.22273 0.93974 1.02096 0.99574 0.93931 0.89464 0.93863 0.92309 0.92402 0.87949 0.87834 0.76313 0.90054 0.90091 0.91564 0.89087 0.89220 0.89131 0.90965 0.89812 0.93965 0.91291 0.90020 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.40 -3.33 10.70 -35.23 -0.38 -3.71 16 3 C 0.08 0.60 5.23 37.16 0.19 0.79 16 4 C -0.14 -0.92 6.07 -27.89 -0.17 -1.08 16 5 C 0.52 4.43 7.79 -10.99 -0.09 4.34 16 6 O -0.54 -6.56 15.64 5.56 0.09 -6.47 16 7 N -0.72 -5.16 4.26 -53.76 -0.23 -5.39 16 8 C 0.15 1.22 2.78 -67.89 -0.19 1.04 16 9 H 0.09 0.85 7.58 -51.93 -0.39 0.46 16 10 C -0.15 -1.37 5.77 -26.61 -0.15 -1.52 16 11 C 0.11 1.14 6.09 -3.71 -0.02 1.12 16 12 N -0.62 -7.85 2.98 -165.47 -0.49 -8.34 16 13 C 0.54 9.43 7.51 -10.99 -0.08 9.35 16 14 O -0.51 -10.44 11.44 5.56 0.06 -10.37 16 15 C -0.13 -2.58 4.51 36.00 0.16 -2.41 16 16 S -0.12 -3.07 19.60 -107.50 -2.11 -5.17 16 17 C -0.61 -17.33 9.50 30.94 0.29 -17.04 16 18 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 19 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.32 13.67 55.49 0.76 -26.56 16 21 Si 1.09 24.88 29.92 -169.99 -5.09 19.79 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.15 1.52 3.18 -67.82 -0.22 1.30 16 26 H 0.06 0.54 6.64 -51.93 -0.34 0.20 16 27 C -0.14 -1.76 7.60 37.16 0.28 -1.48 16 28 C -0.14 -1.15 5.05 -26.84 -0.14 -1.29 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.40 2.22 6.88 -40.82 -0.28 1.93 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.60 7.74 -51.93 -0.40 0.20 16 40 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 41 H 0.09 1.67 7.71 -51.91 -0.40 1.27 16 42 H 0.09 1.69 7.93 -51.92 -0.41 1.28 16 43 H 0.28 8.76 7.12 -40.82 -0.29 8.47 16 44 H 0.08 1.27 6.53 -51.93 -0.34 0.93 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.04 6.97 -51.93 -0.36 0.68 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -35.52 393.57 -8.36 -43.88 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.81 Total: 1.08 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 0.90 Total: -4.66 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.04 Total: -40.29 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.23 Total: -20.56 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.09 Total: 19.79 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.52 -8.36 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074757921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.901 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds