Wall clock time and date at job start Wed Apr 1 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 O 1.42899 * 109.46858 * 119.99919 * 2 1 3 5 5 C 1.52993 * 109.47083 * 239.99832 * 2 1 3 6 6 N 1.46500 * 109.47300 * 180.02562 * 5 2 1 7 7 C 1.38627 * 120.00487 * 180.02562 * 6 5 2 8 8 C 1.39171 * 120.48187 * 359.97438 * 7 6 5 9 9 C 1.39132 * 118.26719 * 180.02562 * 8 7 6 10 10 N 1.38634 * 120.48606 * 179.97438 * 9 8 7 11 11 C 1.46508 * 119.99815 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.46930 * 179.97438 * 11 10 9 13 13 C 1.38297 * 119.93202 * 89.99834 * 12 11 10 14 14 C 1.38101 * 120.07230 * 180.02562 * 13 12 11 15 15 C 1.38886 * 119.92536 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 N 1.33195 * 119.03105 * 0.25419 * 9 8 7 28 28 C 1.31732 * 120.87679 * 359.48165 * 27 9 8 29 29 N 1.31757 * 121.91482 * 0.53598 * 28 27 9 30 30 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.46954 * 300.00299 * 1 2 3 32 32 H 1.09001 * 109.47016 * 60.00123 * 1 2 3 33 33 H 0.96702 * 114.00125 * 60.00295 * 4 2 1 34 34 H 1.09001 * 109.47158 * 60.00131 * 5 2 1 35 35 H 1.08998 * 109.47297 * 300.00039 * 5 2 1 36 36 H 0.97001 * 119.99628 * 359.97438 * 6 5 2 37 37 H 1.07996 * 120.86922 * 0.02562 * 8 7 6 38 38 H 0.96994 * 120.00100 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.46889 * 59.99536 * 11 10 9 40 40 H 1.09004 * 109.46798 * 299.99693 * 11 10 9 41 41 H 1.07999 * 119.96698 * 0.02562 * 13 12 11 42 42 H 1.07992 * 120.03608 * 179.97438 * 14 13 12 43 43 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 45 45 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 46 46 H 1.08007 * 119.04296 * 180.24265 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7218 -1.2489 7 6 4.1982 -1.3217 -2.2888 8 6 3.5126 -1.9269 -3.3378 9 6 4.2544 -2.5156 -4.3571 10 7 3.6186 -3.1317 -5.4240 11 6 2.1551 -3.1657 -5.4841 12 6 1.7204 -3.8868 -6.7339 13 6 1.5208 -5.2550 -6.7071 14 6 1.1229 -5.9189 -7.8508 15 6 0.9227 -5.2108 -9.0287 16 8 0.5310 -5.8605 -10.1545 17 6 0.2430 -7.1722 -10.0355 18 1 0.4064 -7.6779 -9.0953 19 6 -0.2630 -7.8721 -11.1203 20 7 -0.4625 -7.2561 -12.2655 21 14 -0.6628 -9.6893 -10.9552 22 1 -0.3512 -10.1413 -9.5754 23 1 -2.1052 -9.9062 -11.2337 24 1 0.1507 -10.4653 -11.9254 25 6 1.1290 -3.8377 -9.0538 26 6 1.5213 -3.1789 -7.9052 27 7 5.5842 -2.4836 -4.2902 28 6 6.1964 -1.8962 -3.2824 29 7 5.5298 -1.3279 -2.2982 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7210 -1.5952 1.2329 34 1 1.6767 -0.2074 -2.1392 35 1 1.6767 -1.7489 -1.2492 36 1 3.9900 -0.3017 -0.5214 37 1 2.4329 -1.9393 -3.3602 38 1 4.1426 -3.5396 -6.1310 39 1 1.7684 -2.1467 -5.4998 40 1 1.7676 -3.6880 -4.6094 41 1 1.6763 -5.8050 -5.7907 42 1 0.9677 -6.9874 -7.8293 43 1 -0.8162 -7.7458 -13.0244 44 1 0.9784 -3.2851 -9.9693 45 1 1.6776 -2.1104 -7.9229 46 1 7.2762 -1.8843 -3.2599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298242586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:49 Heat of formation + Delta-G solvation = -1.692134 kcal Electronic energy + Delta-G solvation = -28077.271477 eV Core-core repulsion = 23967.548367 eV Total energy + Delta-G solvation = -4109.723110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.83195 -39.25306 -38.68007 -37.34729 -36.14912 -35.42056 -32.68880 -32.34956 -31.54241 -30.40207 -30.29500 -29.12750 -26.70846 -26.00002 -24.99564 -23.43280 -22.44959 -22.13711 -22.10597 -20.66603 -18.26873 -18.21276 -18.09844 -17.14806 -16.88099 -16.57382 -15.61877 -15.36146 -15.30868 -15.17413 -14.79567 -14.74101 -14.55057 -14.18074 -14.04767 -13.92754 -13.75233 -13.67041 -13.51250 -13.13775 -12.92752 -12.84596 -12.50911 -12.35821 -11.79485 -11.49087 -11.43542 -11.35671 -10.99347 -10.88338 -10.76407 -10.71402 -10.51737 -10.49506 -10.38505 -9.46965 -9.15484 -8.96166 -8.37993 -8.34264 -8.04013 -7.39790 -6.57291 -4.16108 1.28224 1.64690 1.98037 2.07773 2.74209 3.04139 3.06871 3.12571 3.29737 3.82147 3.86779 4.05715 4.10376 4.40662 4.41705 4.43988 4.55918 4.78924 4.92871 4.96499 4.99861 5.04880 5.10941 5.14348 5.15404 5.25829 5.44972 5.46544 5.48661 5.56457 5.56974 5.62335 5.71640 6.06623 6.11999 6.27783 6.53080 6.62408 6.73823 6.77699 6.90436 7.05066 7.08225 7.20305 7.28450 7.30254 7.51301 7.65735 7.74582 7.87370 8.46585 8.88013 9.55516 10.60133 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.001839 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.321585 B =15219.819869 C =16164.558282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.093 3.907 3 H 0.106 0.894 4 O -0.560 6.560 5 C 0.094 3.906 6 N -0.712 5.712 7 C 0.459 3.541 8 C -0.366 4.366 9 C 0.463 3.537 10 N -0.702 5.702 11 C 0.187 3.813 12 C -0.218 4.218 13 C -0.048 4.048 14 C -0.237 4.237 15 C 0.162 3.838 16 O -0.172 6.172 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.943 3.057 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.196 4.196 26 C -0.052 4.052 27 N -0.614 5.614 28 C 0.374 3.626 29 N -0.620 5.620 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.378 0.622 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.133 0.867 38 H 0.409 0.591 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.271 0.729 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 12.059 21.847 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.033 3.967 3 H 0.124 0.876 4 O -0.366 6.366 5 C -0.031 4.031 6 N -0.345 5.345 7 C 0.218 3.782 8 C -0.400 4.400 9 C 0.221 3.779 10 N -0.333 5.333 11 C 0.064 3.936 12 C -0.219 4.219 13 C -0.067 4.067 14 C -0.257 4.257 15 C 0.107 3.893 16 O -0.074 6.074 17 C -0.469 4.469 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.215 4.215 26 C -0.070 4.070 27 N -0.343 5.343 28 C 0.082 3.918 29 N -0.349 5.349 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.151 0.849 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.864 12.624 21.454 25.191 hybrid contribution -1.050 -1.518 -0.195 1.856 sum 2.814 11.107 21.259 24.150 Atomic orbital electron populations 1.22433 0.94953 1.03280 1.03535 1.22134 0.93813 0.97017 0.83699 0.87631 1.86608 1.77140 1.29447 1.43363 1.22172 0.80107 1.01410 0.99423 1.44210 1.04994 1.61347 1.23950 1.18134 0.88190 0.85944 0.85889 1.21186 1.01180 1.17581 1.00023 1.18297 0.88096 0.85455 0.86059 1.45021 1.06546 1.58975 1.22735 1.20056 0.78138 0.99279 0.96118 1.19084 1.13961 0.94110 0.94781 1.20623 0.95863 0.93129 0.97046 1.21158 1.10366 1.00901 0.93241 1.19447 0.91437 0.91689 0.86724 1.83977 1.71812 1.24118 1.27509 1.21415 1.44031 0.81770 0.99731 0.88822 1.25339 0.96126 1.00581 0.94461 1.70042 1.40818 1.36853 1.01471 0.85617 0.78531 0.80229 0.78891 1.19026 1.20027 1.20027 1.20212 1.10241 0.91992 0.99041 1.20514 0.96625 0.98327 0.91579 1.67975 1.08575 1.28045 1.29688 1.24280 0.99938 0.85112 0.82455 1.67904 1.06575 1.29274 1.31163 0.91751 0.91084 0.90972 0.77400 0.90742 0.91389 0.75408 0.84949 0.75426 0.91900 0.91957 0.87428 0.85369 0.91867 0.86321 0.86979 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 9.54 37.16 0.35 -0.31 16 2 C 0.09 0.44 3.67 -26.73 -0.10 0.34 16 3 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 4 O -0.56 -3.38 13.08 -35.23 -0.46 -3.84 16 5 C 0.09 0.56 4.59 -4.05 -0.02 0.54 16 6 N -0.71 -6.13 5.60 -60.33 -0.34 -6.47 16 7 C 0.46 5.35 7.70 -154.72 -1.19 4.15 16 8 C -0.37 -4.33 8.62 -38.90 -0.34 -4.67 16 9 C 0.46 6.20 7.70 -154.70 -1.19 5.01 16 10 N -0.70 -9.06 5.71 -61.50 -0.35 -9.41 16 11 C 0.19 2.27 5.05 -5.19 -0.03 2.24 16 12 C -0.22 -3.31 5.25 -104.58 -0.55 -3.85 16 13 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 14 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 15 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 16 O -0.17 -4.71 9.76 0.05 0.00 -4.71 16 17 C -0.39 -10.59 9.49 30.89 0.29 -10.30 16 18 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.42 13.67 55.48 0.76 -23.66 16 21 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.20 -3.86 9.99 -39.39 -0.39 -4.26 16 26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 27 N -0.61 -8.48 10.47 -13.88 -0.15 -8.62 16 28 C 0.37 4.52 12.28 -92.24 -1.13 3.38 16 29 N -0.62 -7.78 10.47 -13.88 -0.15 -7.92 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.38 1.24 9.05 45.56 0.41 1.65 16 34 H 0.07 0.43 7.97 -51.93 -0.41 0.01 16 35 H 0.07 0.39 7.97 -51.93 -0.41 -0.03 16 36 H 0.41 3.48 8.47 -40.82 -0.35 3.14 16 37 H 0.13 1.35 5.65 -52.49 -0.30 1.05 16 38 H 0.41 5.57 8.59 -40.82 -0.35 5.22 16 39 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 40 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 46 H 0.19 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -31.85 391.67 -10.89 -42.75 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.32 Total: 12.05 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -5.77 Total: -10.90 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.22 Total: -56.09 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.46 Total: -8.55 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.85 -10.89 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298242586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.055 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds