Wall clock time and date at job start Wed Apr 1 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46720 * 2 1 4 4 O 1.42897 * 109.47328 * 240.00160 * 2 1 3 5 5 C 1.53004 * 109.47324 * 119.99903 * 2 1 3 6 6 N 1.46493 * 109.47282 * 185.00076 * 5 2 1 7 7 C 1.38628 * 120.00249 * 179.97438 * 6 5 2 8 8 C 1.39175 * 120.48182 * 359.97438 * 7 6 5 9 9 C 1.39132 * 118.26702 * 179.97438 * 8 7 6 10 10 N 1.38626 * 120.48560 * 179.97438 * 9 8 7 11 11 C 1.46507 * 119.99673 * 359.97438 * 10 9 8 12 12 C 1.50707 * 109.46761 * 180.02562 * 11 10 9 13 13 C 1.38302 * 119.93031 * 90.00159 * 12 11 10 14 14 C 1.38101 * 120.06877 * 180.02562 * 13 12 11 15 15 C 1.38876 * 119.92956 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.06861 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53840 * 16 15 14 18 18 H 1.08003 * 120.00029 * 354.94359 * 17 16 15 19 19 C 1.38659 * 120.00122 * 174.94542 * 17 16 15 20 20 N 1.31558 * 119.99705 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47181 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47260 * 210.00361 * 21 19 17 24 24 H 1.48502 * 109.47130 * 330.00179 * 21 19 17 25 25 C 1.38880 * 119.86555 * 0.27954 * 15 14 13 26 26 C 1.38102 * 119.92551 * 359.44514 * 25 15 14 27 27 N 1.33198 * 119.02759 * 0.25813 * 9 8 7 28 28 C 1.31721 * 120.88577 * 359.48244 * 27 9 8 29 29 N 1.31766 * 121.90806 * 0.52780 * 28 27 9 30 30 H 1.08992 * 109.46990 * 299.99599 * 1 2 3 31 31 H 1.08996 * 109.46893 * 60.00430 * 1 2 3 32 32 H 1.09004 * 109.46720 * 179.97438 * 1 2 3 33 33 H 0.96701 * 114.00107 * 59.99661 * 4 2 1 34 34 H 1.09006 * 109.46709 * 65.00280 * 5 2 1 35 35 H 1.09000 * 109.47305 * 305.00692 * 5 2 1 36 36 H 0.97008 * 120.00317 * 0.02562 * 6 5 2 37 37 H 1.07992 * 120.86506 * 359.96049 * 8 7 6 38 38 H 0.96995 * 120.00282 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.46952 * 60.00813 * 11 10 9 40 40 H 1.08995 * 109.47404 * 300.00132 * 11 10 9 41 41 H 1.07999 * 119.96521 * 0.02562 * 13 12 11 42 42 H 1.07997 * 120.03156 * 179.97438 * 14 13 12 43 43 H 0.96997 * 119.99350 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.04097 * 179.72435 * 25 15 14 45 45 H 1.07997 * 119.96688 * 180.27743 * 26 25 15 46 46 H 1.08001 * 119.04866 * 180.26791 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 7 3.5001 -0.6178 1.3110 7 6 4.1923 -1.1987 2.3623 8 6 3.5103 -1.8819 3.3648 9 6 4.2510 -2.4475 4.3979 10 7 3.6188 -3.1377 5.4204 11 6 2.1602 -3.2753 5.4187 12 6 1.7284 -4.0617 6.6296 13 6 1.4340 -3.4045 7.8104 14 6 1.0386 -4.1224 8.9219 15 6 0.9363 -5.5056 8.8530 16 8 0.5474 -6.2140 9.9437 17 6 0.1649 -5.5087 11.0272 18 1 0.2542 -4.4324 11.0301 19 6 -0.3432 -6.1652 12.1379 20 7 -0.7169 -5.4768 13.1949 21 14 -0.4984 -8.0267 12.1327 22 1 0.7531 -8.6292 12.6581 23 1 -1.6407 -8.4306 12.9913 24 1 -0.7309 -8.5001 10.7445 25 6 1.2377 -6.1632 7.6674 26 6 1.6270 -5.4391 6.5577 27 7 5.5760 -2.3112 4.3930 28 6 6.1852 -1.6609 3.4230 29 7 5.5195 -1.1114 2.4275 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7210 -0.2701 -1.9979 34 1 1.7517 -1.7716 1.2055 35 1 1.6054 -0.2618 2.1370 36 1 3.9825 -0.1423 0.6166 37 1 2.4343 -1.9705 3.3415 38 1 4.1419 -3.5289 6.1374 39 1 1.8455 -3.7972 4.5150 40 1 1.7019 -2.2867 5.4457 41 1 1.5134 -2.3287 7.8632 42 1 0.8093 -3.6085 9.8437 43 1 -1.0727 -5.9361 13.9717 44 1 1.1633 -7.2392 7.6120 45 1 1.8572 -5.9494 5.6342 46 1 7.2613 -1.5720 3.4464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298242589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:54 Heat of formation + Delta-G solvation = 1.945034 kcal Electronic energy + Delta-G solvation = -28071.092848 eV Core-core repulsion = 23961.527457 eV Total energy + Delta-G solvation = -4109.565391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.81199 -39.38730 -38.54759 -37.46416 -36.24090 -35.49538 -32.73556 -32.45664 -31.60401 -30.45848 -30.33931 -29.22029 -26.73548 -26.13824 -24.82786 -23.40167 -22.42097 -22.22479 -21.83053 -20.60669 -18.22422 -18.10243 -18.02403 -17.97664 -17.35791 -16.04812 -15.54472 -15.42682 -15.35695 -15.10899 -14.91024 -14.76743 -14.37620 -14.15354 -14.04885 -13.90355 -13.77401 -13.61070 -13.41312 -13.24620 -13.09141 -12.78157 -12.52968 -12.34291 -12.24598 -11.53222 -11.48886 -11.34502 -10.99438 -10.90031 -10.80807 -10.66617 -10.49229 -10.37200 -10.23553 -9.50760 -9.14289 -8.97778 -8.41925 -8.34571 -8.03182 -7.52935 -6.52154 -4.19174 1.30051 1.66287 1.89248 1.99740 2.79026 3.15204 3.19178 3.28291 3.33252 3.58417 4.08218 4.14874 4.22571 4.37171 4.42505 4.45317 4.51851 4.70510 4.79677 4.98444 4.99491 5.02631 5.04679 5.10623 5.21847 5.28026 5.33566 5.47269 5.49215 5.50608 5.57494 5.60762 5.65122 5.99705 6.13582 6.19705 6.41466 6.63302 6.64894 6.77646 6.86770 7.05892 7.07611 7.14905 7.29868 7.46308 7.51696 7.68032 7.74957 7.91696 8.47812 8.82178 9.42428 10.54860 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.001847 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.732819 B =15155.579880 C =16171.152135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.091 3.909 3 H 0.063 0.937 4 O -0.563 6.563 5 C 0.134 3.866 6 N -0.711 5.711 7 C 0.460 3.540 8 C -0.365 4.365 9 C 0.463 3.537 10 N -0.703 5.703 11 C 0.185 3.815 12 C -0.208 4.208 13 C -0.050 4.050 14 C -0.225 4.225 15 C 0.168 3.832 16 O -0.212 6.212 17 C -0.392 4.392 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.874 5.874 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.195 4.195 26 C -0.053 4.053 27 N -0.614 5.614 28 C 0.374 3.626 29 N -0.620 5.620 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.380 0.620 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.408 0.592 37 H 0.133 0.867 38 H 0.409 0.591 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.281 0.719 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 10.885 -25.486 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.032 3.968 3 H 0.081 0.919 4 O -0.369 6.369 5 C 0.009 3.991 6 N -0.344 5.344 7 C 0.219 3.781 8 C -0.399 4.399 9 C 0.221 3.779 10 N -0.334 5.334 11 C 0.062 3.938 12 C -0.210 4.210 13 C -0.068 4.068 14 C -0.244 4.244 15 C 0.115 3.885 16 O -0.116 6.116 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.511 5.511 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.215 4.215 26 C -0.072 4.072 27 N -0.343 5.343 28 C 0.082 3.918 29 N -0.350 5.350 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.244 0.756 37 H 0.151 0.849 38 H 0.246 0.754 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.730 10.272 -24.696 27.162 hybrid contribution -0.989 -0.267 -0.114 1.031 sum 3.740 10.005 -24.810 27.012 Atomic orbital electron populations 1.22446 0.95052 1.03617 1.03210 1.21984 0.93677 0.95440 0.85727 0.91914 1.86590 1.76934 1.57512 1.15884 1.21467 0.79750 1.01617 0.96272 1.44216 1.05623 1.59258 1.25277 1.18122 0.88159 0.86024 0.85750 1.21187 1.01388 1.16478 1.00875 1.18271 0.88086 0.85421 0.86076 1.44957 1.06922 1.56664 1.24816 1.20078 0.78414 0.98906 0.96398 1.19166 1.12773 0.93755 0.95281 1.20686 0.95691 0.98652 0.91808 1.21276 1.08956 0.93966 1.00173 1.19189 0.91938 0.90444 0.86937 1.83572 1.72440 1.35803 1.19757 1.20792 1.42341 0.93456 0.90115 0.87473 1.24499 0.95027 1.00456 0.93982 1.69643 1.40161 1.36793 1.04511 0.86165 0.78172 0.83294 0.79205 1.19767 1.20689 1.18309 1.20210 1.10038 0.99725 0.91481 1.20525 0.96832 0.92867 0.97008 1.67960 1.08742 1.26833 1.30778 1.24269 0.99827 0.85173 0.82512 1.67900 1.06675 1.30475 1.29908 0.90967 0.91668 0.91177 0.77229 0.90869 0.90263 0.75640 0.84901 0.75433 0.91756 0.91773 0.87106 0.84752 0.90875 0.86319 0.86766 0.79195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.68 9.54 37.16 0.35 -0.32 16 2 C 0.09 0.45 3.61 -26.73 -0.10 0.35 16 3 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 4 O -0.56 -3.35 13.27 -35.23 -0.47 -3.82 16 5 C 0.13 0.93 4.59 -4.04 -0.02 0.91 16 6 N -0.71 -6.57 5.66 -60.33 -0.34 -6.91 16 7 C 0.46 5.54 7.70 -154.71 -1.19 4.35 16 8 C -0.37 -4.44 8.62 -38.90 -0.34 -4.78 16 9 C 0.46 6.25 7.70 -154.70 -1.19 5.06 16 10 N -0.70 -9.00 5.71 -61.50 -0.35 -9.35 16 11 C 0.19 2.21 5.05 -5.19 -0.03 2.19 16 12 C -0.21 -3.08 5.25 -104.57 -0.55 -3.62 16 13 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 14 C -0.22 -4.54 9.17 -39.40 -0.36 -4.90 16 15 C 0.17 3.68 6.65 -39.11 -0.26 3.42 16 16 O -0.21 -5.37 8.59 0.05 0.00 -5.37 16 17 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16 18 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 19 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 20 N -0.87 -24.58 13.96 55.48 0.77 -23.81 16 21 Si 0.91 21.07 28.62 -169.99 -4.86 16.21 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 25 C -0.20 -3.62 9.99 -39.39 -0.39 -4.01 16 26 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 27 N -0.61 -8.52 10.47 -13.88 -0.15 -8.67 16 28 C 0.37 4.56 12.28 -92.24 -1.13 3.42 16 29 N -0.62 -7.91 10.47 -13.88 -0.15 -8.05 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.38 0.71 9.08 45.56 0.41 1.12 16 34 H 0.07 0.57 7.97 -51.93 -0.41 0.16 16 35 H 0.08 0.48 7.97 -51.93 -0.41 0.07 16 36 H 0.41 3.56 8.60 -40.82 -0.35 3.21 16 37 H 0.13 1.39 5.64 -52.49 -0.30 1.10 16 38 H 0.41 5.48 8.59 -40.82 -0.35 5.13 16 39 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 40 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 43 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.19 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -31.58 390.89 -10.74 -42.32 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.33 Total: 10.62 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -5.76 Total: -9.06 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.21 Total: -56.79 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.47 Total: -9.19 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.58 -10.74 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298242589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.262 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds