Wall clock time and date at job start Wed Apr 1 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.52997 * 109.47413 * 239.99913 * 2 1 3 5 5 N 1.46502 * 109.47392 * 184.99825 * 4 2 1 6 6 C 1.34776 * 120.00205 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99842 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99943 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46844 * 180.02562 * 8 6 5 10 10 C 1.76193 * 99.99888 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00075 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00093 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99881 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99903 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47578 * 90.00053 * 14 12 10 16 16 H 1.48500 * 109.46956 * 209.99999 * 14 12 10 17 17 H 1.48499 * 109.47178 * 329.99551 * 14 12 10 18 18 N 1.46506 * 109.47340 * 119.99713 * 2 1 3 19 19 C 1.34772 * 119.99709 * 275.00342 * 18 2 1 20 20 O 1.21286 * 120.00476 * 359.97438 * 19 18 2 21 21 C 1.50705 * 119.99775 * 179.97438 * 19 18 2 22 22 C 1.52995 * 109.47378 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.47182 * 180.02562 * 22 21 19 24 24 H 1.09000 * 110.80833 * 51.37300 * 23 22 21 25 25 C 1.54818 * 110.90847 * 175.00210 * 23 22 21 26 26 C 1.54097 * 104.18808 * 139.11151 * 25 23 22 27 27 O 1.43745 * 107.29442 * 2.03270 * 26 25 23 28 28 C 1.44382 * 106.97554 * 333.48168 * 27 26 25 29 29 H 1.08998 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47544 * 300.00120 * 1 2 3 31 31 H 1.09004 * 109.47066 * 60.00446 * 1 2 3 32 32 H 1.09004 * 109.47070 * 305.00163 * 4 2 1 33 33 H 1.08996 * 109.47383 * 65.00043 * 4 2 1 34 34 H 0.97003 * 119.99546 * 0.02562 * 5 4 2 35 35 H 1.08995 * 109.46642 * 299.99569 * 8 6 5 36 36 H 1.08997 * 109.46832 * 60.00350 * 8 6 5 37 37 H 0.97001 * 119.99882 * 179.97438 * 13 12 10 38 38 H 0.96994 * 119.99639 * 94.99687 * 18 2 1 39 39 H 1.09007 * 109.46603 * 59.99900 * 21 19 18 40 40 H 1.08996 * 109.47083 * 300.00388 * 21 19 18 41 41 H 1.09007 * 109.47163 * 60.00454 * 22 21 19 42 42 H 1.09000 * 109.47176 * 300.00723 * 22 21 19 43 43 H 1.09004 * 110.48564 * 20.43861 * 25 23 22 44 44 H 1.08989 * 110.60109 * 257.84964 * 25 23 22 45 45 H 1.08998 * 109.88273 * 242.60534 * 26 25 23 46 46 H 1.08997 * 109.87725 * 121.45198 * 26 25 23 47 47 H 1.08999 * 110.61481 * 158.56165 * 28 27 26 48 48 H 1.08997 * 110.62085 * 281.56061 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.1731 -1.4291 -2.1906 7 8 3.5700 -1.8842 -3.1394 8 6 5.6750 -1.5377 -2.1299 9 16 6.2784 -2.3909 -3.6079 10 6 8.0099 -2.3792 -3.2824 11 1 8.3861 -1.9273 -2.3764 12 6 8.8906 -2.9509 -4.1902 13 7 8.4321 -3.5021 -5.2940 14 14 10.7263 -2.9391 -3.8447 15 1 11.0964 -4.1648 -3.0924 16 1 11.4714 -2.9026 -5.1287 17 1 11.0706 -1.7406 -3.0384 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0181 2.3571 20 8 1.8589 1.1588 2.4115 21 6 2.6489 -0.7286 3.5878 22 6 2.7010 0.2547 4.7588 23 6 3.2111 -0.4665 6.0080 24 1 4.1398 -0.9967 5.7969 25 6 3.3959 0.5256 7.1820 26 6 2.8706 -0.2414 8.4109 27 8 2.4825 -1.5511 7.9634 28 6 2.1366 -1.4340 6.5666 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 3.9824 -0.4627 -0.4315 35 1 6.1098 -0.5393 -2.0843 36 1 5.9629 -2.1005 -1.2421 37 1 9.0477 -3.9013 -5.9287 38 1 2.2490 -1.6317 1.1527 39 1 3.6481 -1.1211 3.3986 40 1 1.9761 -1.5505 3.8326 41 1 1.7020 0.6475 4.9481 42 1 3.3740 1.0763 4.5136 43 1 2.8074 1.4279 7.0152 44 1 4.4488 0.7764 7.3101 45 1 2.0089 0.2773 8.8311 46 1 3.6576 -0.3240 9.1605 47 1 2.1996 -2.4038 6.0730 48 1 1.1399 -1.0079 6.4523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721913821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:28 Heat of formation + Delta-G solvation = -143.040012 kcal Electronic energy + Delta-G solvation = -26926.173064 eV Core-core repulsion = 22913.471849 eV Total energy + Delta-G solvation = -4012.701214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -40.47450 -39.79098 -39.12401 -36.65620 -34.90653 -33.73703 -32.46004 -31.93884 -30.93415 -29.46183 -28.91351 -26.09504 -25.44270 -24.97738 -22.95733 -21.65903 -20.87100 -20.64672 -20.39972 -18.01056 -17.51365 -17.04493 -16.77406 -16.32994 -16.21507 -16.00421 -15.72689 -15.34565 -15.07595 -14.83226 -14.50242 -14.17300 -14.09438 -13.63678 -13.54792 -13.35337 -13.10711 -12.96740 -12.90549 -12.62803 -12.55490 -12.26634 -12.00387 -11.86014 -11.83439 -11.51858 -11.31681 -11.17949 -11.08960 -11.05627 -10.96220 -10.78989 -10.15557 -10.12272 -9.85387 -9.55739 -9.43228 -9.10645 -9.00583 -8.27951 -6.53919 -6.24823 -3.95734 2.30160 2.73441 2.97856 3.02579 3.20069 3.25656 3.29488 3.48378 3.65355 4.00791 4.17327 4.20155 4.29500 4.38275 4.46042 4.58085 4.69451 4.77237 4.80275 4.87183 4.93668 5.06779 5.09459 5.10472 5.15752 5.23460 5.29408 5.30755 5.31623 5.36725 5.46743 5.48634 5.50888 5.63698 5.69101 5.71236 5.82996 5.83686 5.86793 6.08401 6.12515 6.40503 6.48762 7.12393 7.56269 7.59609 7.87587 8.31991 8.52005 9.20593 10.82556 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.001980 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.639462 B =14135.472716 C =16426.014933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.728 5.728 19 C 0.514 3.486 20 O -0.540 6.540 21 C -0.145 4.145 22 C -0.092 4.092 23 C -0.124 4.124 24 H 0.089 0.911 25 C -0.153 4.153 26 C 0.046 3.954 27 O -0.380 6.380 28 C 0.048 3.952 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.404 0.596 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 7.344 24.025 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.381 5.381 19 C 0.301 3.699 20 O -0.416 6.416 21 C -0.185 4.185 22 C -0.130 4.130 23 C -0.142 4.142 24 H 0.107 0.893 25 C -0.191 4.191 26 C -0.031 4.031 27 O -0.299 6.299 28 C -0.028 4.028 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.239 0.761 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.145 7.159 22.414 28.536 hybrid contribution 2.231 0.427 1.463 2.702 sum -13.914 7.585 23.878 28.658 Atomic orbital electron populations 1.22097 0.94059 1.02665 1.03065 1.21243 0.94942 0.97850 0.83380 0.88685 1.21613 0.81158 1.01314 0.97089 1.45996 1.06778 1.62073 1.24664 1.20333 0.89540 0.76724 0.81601 1.90713 1.69858 1.45972 1.32423 1.23530 0.93464 1.05721 1.07705 1.85400 1.04665 1.73018 1.20190 1.22860 0.91511 1.44415 1.09650 0.90934 1.24996 0.99622 0.94539 0.94443 1.70014 1.35453 1.35420 1.09346 0.86164 0.82798 0.78614 0.77903 1.20253 1.20732 1.19700 1.46190 1.67774 1.14432 1.09728 1.20731 0.77212 0.87359 0.84587 1.90719 1.49814 1.16058 1.85045 1.21750 1.03582 0.99956 0.93173 1.21296 1.02788 0.97430 0.91525 1.22810 0.99843 0.96561 0.95019 0.89284 1.22999 1.02732 0.99133 0.94221 1.23164 0.99292 0.83801 0.96855 1.88881 1.87207 1.28769 1.25065 1.23705 0.97266 1.00170 0.81681 0.92013 0.91659 0.91073 0.90908 0.89989 0.76757 0.89237 0.89262 0.92155 0.76146 0.88404 0.88764 0.90842 0.90518 0.90312 0.90278 0.92414 0.89888 0.88883 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.13 1.06 2.73 -67.93 -0.19 0.87 16 3 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 4 C 0.11 1.13 5.23 -4.04 -0.02 1.11 16 5 N -0.74 -8.91 5.39 -60.29 -0.32 -9.23 16 6 C 0.53 9.35 7.85 -10.98 -0.09 9.26 16 7 O -0.52 -11.18 15.86 5.55 0.09 -11.10 16 8 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 11 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 14 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 N -0.73 -5.07 4.52 -53.80 -0.24 -5.31 16 19 C 0.51 4.20 7.79 -10.99 -0.09 4.11 16 20 O -0.54 -6.46 15.65 5.55 0.09 -6.37 16 21 C -0.14 -0.76 5.60 -27.88 -0.16 -0.92 16 22 C -0.09 -0.55 3.90 -26.74 -0.10 -0.66 16 23 C -0.12 -0.68 3.09 -88.61 -0.27 -0.95 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 C -0.15 -0.82 6.60 -25.20 -0.17 -0.99 16 26 C 0.05 0.28 7.70 37.73 0.29 0.57 16 27 O -0.38 -3.29 11.52 -35.23 -0.41 -3.70 16 28 C 0.05 0.30 6.63 38.21 0.25 0.55 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.40 3.96 8.14 -40.82 -0.33 3.63 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 36 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.40 2.20 8.60 -40.82 -0.35 1.85 16 39 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.09 0.34 7.73 -51.93 -0.40 -0.06 16 41 H 0.07 0.50 7.94 -51.92 -0.41 0.09 16 42 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.08 0.39 7.86 -51.93 -0.41 -0.01 16 44 H 0.08 0.38 8.14 -51.94 -0.42 -0.04 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 LS Contribution 411.20 15.07 6.20 6.20 Total: -1.00 -36.21 411.20 -9.04 -45.25 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.17 Total: 0.41 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 0.24 Total: -3.37 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.17 Total: -39.67 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.23 Total: -21.17 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.21 -9.04 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721913821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.789 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.31 seconds