Wall clock time and date at job start Wed Apr 1 2020 04:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46835 * 2 1 4 4 C 1.52999 * 109.47168 * 120.00257 * 2 1 3 5 5 N 1.46504 * 109.47003 * 175.00137 * 4 2 1 6 6 C 1.34776 * 119.99629 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00127 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99699 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47386 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.52160 * 305.12821 * 9 8 6 11 11 C 1.53178 * 109.52605 * 184.99784 * 9 8 6 12 12 C 1.53178 * 109.03511 * 183.05016 * 11 9 8 13 13 C 1.53093 * 109.16255 * 56.98447 * 12 11 9 14 14 O 1.42904 * 109.42351 * 302.38111 * 13 12 11 15 15 C 1.42930 * 114.08305 * 61.15476 * 14 13 12 16 16 N 1.46500 * 109.47047 * 240.00453 * 2 1 3 17 17 C 1.34774 * 120.00191 * 85.00129 * 16 2 1 18 18 O 1.21278 * 120.00077 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99921 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.46962 * 179.97438 * 19 17 16 21 21 C 1.76206 * 99.99928 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00185 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99710 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99722 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00590 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47505 * 89.99421 * 25 23 21 27 27 H 1.48493 * 109.47223 * 210.00122 * 25 23 21 28 28 H 1.48503 * 109.46624 * 329.99601 * 25 23 21 29 29 H 1.08995 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47200 * 299.99557 * 1 2 3 31 31 H 1.09005 * 109.47201 * 59.99885 * 1 2 3 32 32 H 1.08995 * 109.46984 * 54.99740 * 4 2 1 33 33 H 1.09002 * 109.46963 * 295.00004 * 4 2 1 34 34 H 0.96998 * 119.99630 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47270 * 59.99644 * 8 6 5 36 36 H 1.09001 * 109.47506 * 300.00041 * 8 6 5 37 37 H 1.09002 * 109.54068 * 63.18427 * 11 9 8 38 38 H 1.08992 * 109.61712 * 302.96567 * 11 9 8 39 39 H 1.09000 * 109.52619 * 297.07706 * 12 11 9 40 40 H 1.08997 * 109.57176 * 176.91900 * 12 11 9 41 41 H 1.09002 * 109.48198 * 62.37219 * 13 12 11 42 42 H 1.08999 * 109.48029 * 182.39833 * 13 12 11 43 43 H 1.09003 * 109.47243 * 178.86599 * 15 14 13 44 44 H 1.08992 * 109.48518 * 58.83967 * 15 14 13 45 45 H 0.97007 * 119.99850 * 264.99320 * 16 2 1 46 46 H 1.08996 * 109.47619 * 299.99891 * 19 17 16 47 47 H 1.09000 * 109.47080 * 60.00031 * 19 17 16 48 48 H 0.97003 * 119.99951 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5700 -1.8825 3.1403 8 6 5.6750 -1.5359 2.1310 9 6 6.1852 -2.2562 3.3807 10 1 5.8201 -1.7439 4.2709 11 6 7.7170 -2.2563 3.3821 12 6 8.2154 -3.0453 4.5968 13 6 7.6344 -4.4609 4.5494 14 8 6.2075 -4.3882 4.5191 15 6 5.6825 -3.7022 3.3803 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3571 18 8 1.8582 1.1585 -2.4117 19 6 2.6499 -0.7284 -3.5875 20 16 2.7100 0.4345 -4.9732 21 6 3.3132 -0.6307 -6.2406 22 1 3.5226 -1.6670 -6.0207 23 6 3.5193 -0.1377 -7.5216 24 7 3.9694 -0.9335 -8.4685 25 14 3.1578 1.6551 -7.9020 26 1 4.3770 2.4679 -7.6612 27 1 2.7477 1.7867 -9.3231 28 1 2.0610 2.1359 -7.0238 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 3.9824 -0.4621 0.4319 35 1 6.1093 -0.5372 2.0849 36 1 5.9638 -2.0989 1.2434 37 1 8.0816 -1.2306 3.4389 38 1 8.0837 -2.7235 2.4683 39 1 7.8914 -2.5490 5.5115 40 1 9.3039 -3.0975 4.5767 41 1 7.9915 -4.9707 3.6546 42 1 7.9514 -5.0137 5.4337 43 1 4.5933 -3.7085 3.4226 44 1 6.0139 -4.2020 2.4702 45 1 2.2491 -1.6317 -1.1527 46 1 3.6492 -1.1202 -3.3980 47 1 1.9777 -1.5506 -3.8326 48 1 4.1138 -0.5889 -9.3637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758778564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:46 Heat of formation + Delta-G solvation = -143.882671 kcal Electronic energy + Delta-G solvation = -27443.406738 eV Core-core repulsion = 23430.668984 eV Total energy + Delta-G solvation = -4012.737755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.58815 -39.71393 -39.05502 -36.55286 -34.74539 -33.95409 -32.49484 -32.45533 -31.63006 -28.88422 -28.44596 -26.12468 -25.66715 -25.33807 -23.07254 -21.93964 -20.73916 -20.54030 -20.33097 -18.06027 -17.35768 -16.84742 -16.77480 -16.63684 -16.25560 -15.89291 -15.56079 -15.13997 -15.03117 -14.93690 -14.67110 -14.47413 -14.15864 -13.57491 -13.40703 -13.15896 -13.09133 -12.99094 -12.97498 -12.84786 -12.76131 -12.25315 -12.15294 -11.96810 -11.59497 -11.37951 -11.32895 -11.28750 -11.18913 -11.05882 -10.66818 -10.65908 -10.05408 -9.91439 -9.75894 -9.65726 -9.41565 -9.19028 -9.05166 -8.57112 -6.98529 -6.34176 -4.06655 2.30650 2.64282 2.77935 2.86482 3.22891 3.28680 3.45450 3.57290 3.60687 4.22569 4.27683 4.30509 4.32815 4.38366 4.53744 4.62316 4.66360 4.78271 4.81717 4.98371 5.00662 5.04917 5.06118 5.12278 5.16867 5.18315 5.26100 5.27619 5.39223 5.42179 5.49329 5.49944 5.58999 5.63471 5.66735 5.79224 5.84547 5.92296 5.94414 5.99100 6.11606 6.40970 6.91975 7.12810 7.46045 7.88070 7.88752 8.35454 8.36409 9.11803 10.74987 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.002074 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.496313 B =13498.464229 C =15047.365328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.095 0.905 4 C 0.112 3.888 5 N -0.730 5.730 6 C 0.512 3.488 7 O -0.537 6.537 8 C -0.138 4.138 9 C -0.106 4.106 10 H 0.088 0.912 11 C -0.120 4.120 12 C -0.155 4.155 13 C 0.056 3.944 14 O -0.380 6.380 15 C 0.061 3.939 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.516 6.516 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.405 0.595 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.044 0.956 45 H 0.400 0.600 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -3.796 25.627 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.383 5.383 6 C 0.299 3.701 7 O -0.414 6.414 8 C -0.178 4.178 9 C -0.125 4.125 10 H 0.106 0.894 11 C -0.157 4.157 12 C -0.193 4.193 13 C -0.021 4.021 14 O -0.299 6.299 15 C -0.015 4.015 16 N -0.391 5.391 17 C 0.318 3.682 18 O -0.390 6.390 19 C -0.276 4.276 20 S 0.086 5.914 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.240 0.760 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.063 0.937 45 H 0.234 0.766 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.415 -2.255 26.170 26.488 hybrid contribution 0.852 -0.813 -1.079 1.597 sum 4.268 -3.067 25.091 25.636 Atomic orbital electron populations 1.22118 0.94082 1.02648 1.03219 1.21157 0.95103 0.97837 0.83240 0.88694 1.21708 0.80071 1.01614 0.97800 1.46060 1.07799 1.60258 1.24178 1.20717 0.90168 0.77253 0.81970 1.90700 1.70417 1.47332 1.32974 1.21716 0.92008 1.03521 1.00587 1.21548 0.95322 0.97524 0.98110 0.89395 1.21670 0.94604 1.00983 0.98488 1.22177 1.00898 0.97016 0.99223 1.22594 0.81677 0.95916 1.01893 1.87988 1.19997 1.76558 1.45311 1.22862 1.00598 0.89976 0.88078 1.46121 1.69386 1.14125 1.09450 1.20315 0.76873 0.87220 0.83781 1.90710 1.48224 1.15756 1.84315 1.23288 1.04440 1.03570 0.96290 1.84803 1.87239 1.16665 1.02736 1.22304 1.50506 0.98783 0.95406 0.89385 1.24721 0.93351 0.98306 0.94959 1.69937 1.43241 1.35811 1.02587 0.86732 0.81079 0.84795 0.79219 1.19208 1.19915 1.15946 0.92099 0.91441 0.91089 0.90692 0.89949 0.75963 0.88288 0.88443 0.91225 0.91529 0.90995 0.90811 0.93279 0.89062 0.87115 0.93741 0.76563 0.88533 0.88434 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.13 1.21 2.73 -67.93 -0.19 1.03 16 3 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 4 C 0.11 0.88 5.23 -4.04 -0.02 0.86 16 5 N -0.73 -5.57 5.39 -60.29 -0.32 -5.90 16 6 C 0.51 4.54 7.56 -10.99 -0.08 4.45 16 7 O -0.54 -6.57 13.99 5.55 0.08 -6.49 16 8 C -0.14 -0.89 5.18 -27.88 -0.14 -1.03 16 9 C -0.11 -0.82 2.03 -90.48 -0.18 -1.00 16 10 H 0.09 0.83 7.95 -51.93 -0.41 0.42 16 11 C -0.12 -0.74 5.31 -26.55 -0.14 -0.88 16 12 C -0.16 -0.96 6.14 -26.59 -0.16 -1.13 16 13 C 0.06 0.41 6.84 37.21 0.25 0.66 16 14 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 15 C 0.06 0.57 5.84 37.21 0.22 0.79 16 16 N -0.74 -7.70 4.52 -53.81 -0.24 -7.95 16 17 C 0.53 8.30 7.81 -10.99 -0.09 8.21 16 18 O -0.52 -10.05 15.52 5.56 0.09 -9.96 16 19 C -0.13 -2.22 6.16 36.01 0.22 -2.00 16 20 S -0.14 -3.40 18.55 -107.50 -1.99 -5.39 16 21 C -0.52 -14.59 10.04 30.94 0.31 -14.27 16 22 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 23 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 24 N -0.88 -26.01 13.97 55.49 0.78 -25.24 16 25 Si 0.86 21.26 27.74 -169.99 -4.72 16.55 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.41 2.77 8.14 -40.82 -0.33 2.44 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.11 1.22 6.04 -51.93 -0.31 0.91 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.40 3.32 8.60 -40.82 -0.35 2.97 16 46 H 0.10 1.56 8.14 -51.92 -0.42 1.13 16 47 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 48 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -34.75 402.18 -8.55 -43.30 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.14 Total: 2.17 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 0.25 Total: -2.78 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.21 Total: -39.08 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.22 Total: -20.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.72 Total: 16.55 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.75 -8.55 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758778564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.582 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds