Wall clock time and date at job start Wed Apr 1 2020 04:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46835 * 2 1 4 4 C 1.52999 * 109.47168 * 120.00257 * 2 1 3 5 5 N 1.46504 * 109.47003 * 175.00137 * 4 2 1 6 6 C 1.34776 * 119.99629 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00127 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99699 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47386 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.52160 * 305.12821 * 9 8 6 11 11 C 1.53178 * 109.52605 * 184.99784 * 9 8 6 12 12 C 1.53178 * 109.03511 * 183.05016 * 11 9 8 13 13 C 1.53093 * 109.16255 * 56.98447 * 12 11 9 14 14 O 1.42904 * 109.42351 * 302.38111 * 13 12 11 15 15 C 1.42930 * 114.08305 * 61.15476 * 14 13 12 16 16 N 1.46500 * 109.47047 * 240.00453 * 2 1 3 17 17 C 1.34774 * 120.00191 * 85.00129 * 16 2 1 18 18 O 1.21278 * 120.00077 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99921 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.46962 * 179.97438 * 19 17 16 21 21 C 1.76206 * 99.99928 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00185 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99710 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99722 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00590 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47505 * 89.99421 * 25 23 21 27 27 H 1.48493 * 109.47223 * 210.00122 * 25 23 21 28 28 H 1.48503 * 109.46624 * 329.99601 * 25 23 21 29 29 H 1.08995 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47200 * 299.99557 * 1 2 3 31 31 H 1.09005 * 109.47201 * 59.99885 * 1 2 3 32 32 H 1.08995 * 109.46984 * 54.99740 * 4 2 1 33 33 H 1.09002 * 109.46963 * 295.00004 * 4 2 1 34 34 H 0.96998 * 119.99630 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47270 * 59.99644 * 8 6 5 36 36 H 1.09001 * 109.47506 * 300.00041 * 8 6 5 37 37 H 1.09002 * 109.54068 * 63.18427 * 11 9 8 38 38 H 1.08992 * 109.61712 * 302.96567 * 11 9 8 39 39 H 1.09000 * 109.52619 * 297.07706 * 12 11 9 40 40 H 1.08997 * 109.57176 * 176.91900 * 12 11 9 41 41 H 1.09002 * 109.48198 * 62.37219 * 13 12 11 42 42 H 1.08999 * 109.48029 * 182.39833 * 13 12 11 43 43 H 1.09003 * 109.47243 * 178.86599 * 15 14 13 44 44 H 1.08992 * 109.48518 * 58.83967 * 15 14 13 45 45 H 0.97007 * 119.99850 * 264.99320 * 16 2 1 46 46 H 1.08996 * 109.47619 * 299.99891 * 19 17 16 47 47 H 1.09000 * 109.47080 * 60.00031 * 19 17 16 48 48 H 0.97003 * 119.99951 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5700 -1.8825 3.1403 8 6 5.6750 -1.5359 2.1310 9 6 6.1852 -2.2562 3.3807 10 1 5.8201 -1.7439 4.2709 11 6 7.7170 -2.2563 3.3821 12 6 8.2154 -3.0453 4.5968 13 6 7.6344 -4.4609 4.5494 14 8 6.2075 -4.3882 4.5191 15 6 5.6825 -3.7022 3.3803 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3571 18 8 1.8582 1.1585 -2.4117 19 6 2.6499 -0.7284 -3.5875 20 16 2.7100 0.4345 -4.9732 21 6 3.3132 -0.6307 -6.2406 22 1 3.5226 -1.6670 -6.0207 23 6 3.5193 -0.1377 -7.5216 24 7 3.9694 -0.9335 -8.4685 25 14 3.1578 1.6551 -7.9020 26 1 4.3770 2.4679 -7.6612 27 1 2.7477 1.7867 -9.3231 28 1 2.0610 2.1359 -7.0238 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 3.9824 -0.4621 0.4319 35 1 6.1093 -0.5372 2.0849 36 1 5.9638 -2.0989 1.2434 37 1 8.0816 -1.2306 3.4389 38 1 8.0837 -2.7235 2.4683 39 1 7.8914 -2.5490 5.5115 40 1 9.3039 -3.0975 4.5767 41 1 7.9915 -4.9707 3.6546 42 1 7.9514 -5.0137 5.4337 43 1 4.5933 -3.7085 3.4226 44 1 6.0139 -4.2020 2.4702 45 1 2.2491 -1.6317 -1.1527 46 1 3.6492 -1.1202 -3.3980 47 1 1.9777 -1.5506 -3.8326 48 1 4.1138 -0.5889 -9.3637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758778564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:45 Heat of formation + Delta-G solvation = -169.539464 kcal Electronic energy + Delta-G solvation = -27444.519300 eV Core-core repulsion = 23430.668984 eV Total energy + Delta-G solvation = -4013.850317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.32329 -40.74569 -39.81032 -37.49530 -35.37507 -34.82376 -34.65516 -33.04731 -32.63989 -30.11965 -29.10390 -27.83642 -26.78256 -25.94164 -23.68538 -22.84623 -21.64317 -21.35905 -20.92948 -19.91154 -18.23935 -17.96023 -17.57300 -17.32350 -17.10839 -16.92347 -16.77956 -16.40170 -16.28136 -15.87001 -15.51957 -15.27682 -15.11091 -14.98325 -14.74034 -14.21466 -14.09147 -13.78847 -13.71480 -13.53970 -13.39557 -13.34665 -13.32187 -13.01568 -12.99750 -12.65669 -12.57617 -12.12572 -12.05432 -11.93631 -11.85788 -11.76183 -11.25601 -11.16073 -10.99123 -10.77007 -10.51318 -10.38030 -10.22228 -10.10907 -8.97418 -8.50508 -6.20714 1.00638 1.32102 1.47574 1.56319 1.57286 1.63915 2.09898 2.24634 2.28674 2.73023 2.87974 2.99321 3.56679 3.66321 3.78762 3.83469 3.88510 4.03353 4.04128 4.07707 4.22878 4.27187 4.30018 4.38332 4.50017 4.55358 4.58198 4.61843 4.70658 4.72184 4.74065 4.76856 4.87425 4.98643 4.99013 5.08764 5.11127 5.22601 5.27169 5.39276 5.43129 5.47359 5.71742 6.13002 6.29503 6.43869 6.49563 6.94963 7.18908 7.22755 8.61748 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.002074 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.496313 B =13498.464229 C =15047.365328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.084 0.916 4 C 0.121 3.879 5 N -0.724 5.724 6 C 0.510 3.490 7 O -0.574 6.574 8 C -0.133 4.133 9 C -0.101 4.101 10 H 0.065 0.935 11 C -0.117 4.117 12 C -0.154 4.154 13 C 0.049 3.951 14 O -0.410 6.410 15 C 0.061 3.939 16 N -0.710 5.710 17 C 0.541 3.459 18 O -0.557 6.557 19 C -0.113 4.113 20 S -0.174 6.174 21 C -0.528 4.528 22 H 0.062 0.938 23 C 0.044 3.956 24 N -0.918 5.918 25 Si 0.914 3.086 26 H -0.261 1.261 27 H -0.262 1.262 28 H -0.236 1.236 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.412 0.588 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.415 0.585 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -3.409 26.605 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.004 4.004 5 N -0.376 5.376 6 C 0.299 3.701 7 O -0.454 6.454 8 C -0.173 4.173 9 C -0.121 4.121 10 H 0.083 0.917 11 C -0.155 4.155 12 C -0.192 4.192 13 C -0.027 4.027 14 O -0.329 6.329 15 C -0.015 4.015 16 N -0.364 5.364 17 C 0.326 3.674 18 O -0.435 6.435 19 C -0.264 4.264 20 S 0.052 5.948 21 C -0.675 4.675 22 H 0.081 0.919 23 C -0.161 4.161 24 N -0.556 5.556 25 Si 0.736 3.264 26 H -0.186 1.186 27 H -0.187 1.187 28 H -0.160 1.160 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.252 0.748 46 H 0.135 0.865 47 H 0.128 0.872 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.097 -1.899 27.163 27.536 hybrid contribution 0.627 -1.071 -1.219 1.739 sum 4.724 -2.970 25.944 26.538 Atomic orbital electron populations 1.22090 0.93553 1.03312 1.02862 1.21192 0.95421 0.97243 0.82771 0.89825 1.21609 0.80257 1.01638 0.96852 1.46024 1.07716 1.59762 1.24127 1.21140 0.91149 0.76470 0.81377 1.90697 1.71317 1.48967 1.34448 1.21747 0.90118 1.04765 1.00629 1.21459 0.96540 0.96240 0.97815 0.91698 1.21681 0.93132 1.01806 0.98869 1.22176 1.01948 0.96138 0.98927 1.22800 0.80157 0.96996 1.02795 1.87937 1.21989 1.76990 1.45978 1.22818 0.99391 0.91169 0.88169 1.45859 1.67607 1.14633 1.08321 1.19875 0.76673 0.86506 0.84298 1.90708 1.50399 1.17415 1.84950 1.23286 1.06313 1.02217 0.94582 1.84719 1.87005 1.18525 1.04518 1.22470 1.49951 0.98305 0.96790 0.91932 1.25574 0.93338 1.02205 0.95010 1.70020 1.44605 1.37712 1.03227 0.85865 0.81009 0.80064 0.79424 1.18610 1.18677 1.16018 0.90928 0.89575 0.93693 0.90236 0.89630 0.75228 0.86315 0.86510 0.90060 0.90438 0.91952 0.88923 0.92371 0.88216 0.89457 0.92670 0.74796 0.86486 0.87169 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.14 2.25 2.73 44.99 0.12 2.38 16 3 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 4 C 0.12 1.62 5.23 86.38 0.45 2.08 16 5 N -0.72 -9.42 5.39 -463.06 -2.49 -11.92 16 6 C 0.51 8.24 7.56 87.66 0.66 8.91 16 7 O -0.57 -13.79 13.99 -3.04 -0.04 -13.83 16 8 C -0.13 -1.41 5.18 29.85 0.15 -1.26 16 9 C -0.10 -1.44 2.03 -10.70 -0.02 -1.46 16 10 H 0.06 1.22 7.95 -2.39 -0.02 1.21 16 11 C -0.12 -1.18 5.31 30.71 0.16 -1.02 16 12 C -0.15 -1.66 6.14 30.68 0.19 -1.47 16 13 C 0.05 0.66 6.84 72.01 0.49 1.15 16 14 O -0.41 -8.60 10.77 -148.98 -1.60 -10.20 16 15 C 0.06 1.11 5.84 72.01 0.42 1.53 16 16 N -0.71 -13.14 4.52 -442.54 -2.00 -15.14 16 17 C 0.54 15.89 7.81 87.66 0.68 16.58 16 18 O -0.56 -21.12 15.52 -3.02 -0.05 -21.17 16 19 C -0.11 -3.81 6.16 71.24 0.44 -3.37 16 20 S -0.17 -8.31 18.55 -56.49 -1.05 -9.35 16 21 C -0.53 -29.60 10.04 67.95 0.68 -28.92 16 22 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 23 C 0.04 2.52 5.50 84.86 0.47 2.99 16 24 N -0.92 -54.76 13.97 21.65 0.30 -54.46 16 25 Si 0.91 43.81 27.74 68.60 1.90 45.71 16 26 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 27 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.24 -11.27 6.74 99.48 0.67 -10.60 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.98 8.14 -2.38 -0.02 0.97 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.41 4.48 8.14 -92.71 -0.75 3.73 16 35 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.98 6.04 -2.39 -0.01 1.97 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.42 5.56 8.60 -92.70 -0.80 4.77 16 46 H 0.12 3.50 8.14 -2.40 -0.02 3.48 16 47 H 0.11 3.48 8.14 -2.40 -0.02 3.46 16 48 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -76.87 402.18 -0.06 -76.94 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.62 Total: 17.21 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.59 Total: -3.79 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -4.19 Total: -81.51 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.69 Total: -45.21 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.90 Total: 45.71 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.05 Total: -9.35 kcal Total: -76.87 -0.06 -76.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758778564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.603 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds