Wall clock time and date at job start Wed Apr 1 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47051 * 2 1 4 4 C 1.34781 * 119.99705 * 84.95651 * 3 2 1 5 5 O 1.21281 * 120.00052 * 3.37616 * 4 3 2 6 6 C 1.50706 * 120.00069 * 183.38116 * 4 3 2 7 7 C 1.52581 * 109.24163 * 190.39916 * 6 4 3 8 8 C 1.53036 * 109.98442 * 169.71182 * 7 6 4 9 9 S 1.81678 * 109.07710 * 63.60138 * 8 7 6 10 10 O 1.42101 * 108.66182 * 60.07974 * 9 8 7 11 11 O 1.42103 * 108.66279 * 191.41963 * 9 8 7 12 12 C 1.81693 * 101.29436 * 305.82728 * 9 8 7 13 13 C 1.52594 * 109.23978 * 69.24282 * 6 4 3 14 14 C 1.46495 * 120.00479 * 264.94849 * 3 2 1 15 15 H 1.09001 * 110.64556 * 184.01220 * 14 3 2 16 16 C 1.55159 * 110.71645 * 60.86633 * 14 3 2 17 17 C 1.55379 * 101.36730 * 277.04405 * 16 14 3 18 18 N 1.47426 * 104.87383 * 323.01651 * 17 16 14 19 19 C 1.36943 * 125.64877 * 204.09737 * 18 17 16 20 20 H 1.07993 * 120.00259 * 164.83580 * 19 18 17 21 21 C 1.38812 * 119.99907 * 344.83481 * 19 18 17 22 22 N 1.31618 * 120.00058 * 0.11757 * 21 19 18 23 23 Si 1.86803 * 120.00056 * 180.11830 * 21 19 18 24 24 H 1.48494 * 109.47375 * 94.98272 * 23 21 19 25 25 H 1.48497 * 109.46861 * 214.98400 * 23 21 19 26 26 H 1.48499 * 109.46731 * 334.97798 * 23 21 19 27 27 C 1.47019 * 108.70523 * 24.13432 * 18 17 16 28 28 H 1.09003 * 109.47212 * 299.99436 * 1 2 3 29 29 H 1.09004 * 109.47524 * 59.99558 * 1 2 3 30 30 H 1.09001 * 109.47548 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47212 * 240.00564 * 2 1 3 32 32 H 1.08994 * 109.47435 * 120.00375 * 2 1 3 33 33 H 1.09002 * 109.20533 * 309.82557 * 6 4 3 34 34 H 1.08998 * 109.38938 * 49.55793 * 7 6 4 35 35 H 1.08998 * 109.30498 * 289.81679 * 7 6 4 36 36 H 1.09002 * 109.55012 * 183.50007 * 8 7 6 37 37 H 1.08993 * 109.55027 * 303.69536 * 8 7 6 38 38 H 1.09002 * 109.47125 * 294.31914 * 12 9 8 39 39 H 1.08997 * 109.63645 * 174.12378 * 12 9 8 40 40 H 1.08998 * 109.38876 * 310.44455 * 13 6 4 41 41 H 1.08997 * 109.38161 * 70.13450 * 13 6 4 42 42 H 1.08998 * 111.00160 * 35.21873 * 16 14 3 43 43 H 1.09004 * 110.99918 * 159.06370 * 16 14 3 44 44 H 1.09001 * 110.34539 * 204.16821 * 17 16 14 45 45 H 1.08997 * 110.44402 * 81.91647 * 17 16 14 46 46 H 0.97001 * 120.00128 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.88382 * 239.52410 * 27 18 17 48 48 H 1.08997 * 109.88630 * 118.35552 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1461 2.0507 1.1627 5 8 1.9156 1.4907 2.2135 6 6 2.5754 3.4953 1.1572 7 6 2.8896 3.9320 2.5850 8 6 3.5669 5.3043 2.5752 9 16 2.4090 6.5331 1.9044 10 8 1.2533 6.5674 2.7306 11 8 3.1201 7.7369 1.6505 12 6 1.9634 5.7722 0.3158 13 6 1.4574 4.3499 0.5670 14 6 2.3677 2.0347 -1.2637 15 1 2.7779 3.0281 -1.0821 16 6 1.1335 2.1131 -2.2007 17 6 1.1510 0.7012 -2.8491 18 7 2.5796 0.3868 -3.0328 19 6 3.0919 -0.4916 -3.9500 20 1 4.1470 -0.4783 -4.1796 21 6 2.2549 -1.3992 -4.5846 22 7 0.9686 -1.4139 -4.3065 23 14 2.9543 -2.5996 -5.8334 24 1 3.2594 -3.8892 -5.1634 25 1 1.9602 -2.8257 -6.9131 26 1 4.1992 -2.0379 -6.4165 27 6 3.3630 1.1717 -2.0677 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.4703 3.6011 0.5439 34 1 3.5552 3.2035 3.0480 35 1 1.9632 3.9899 3.1563 36 1 3.8441 5.5815 3.5923 37 1 4.4598 5.2659 1.9514 38 1 2.8410 5.7384 -0.3297 39 1 1.1799 6.3585 -0.1642 40 1 1.1261 3.9121 -0.3747 41 1 0.6200 4.3816 1.2639 42 1 0.2191 2.2733 -1.6297 43 1 1.2634 2.8908 -2.9535 44 1 0.6398 0.7198 -3.8116 45 1 0.6843 -0.0277 -2.1866 46 1 0.3837 -2.0483 -4.7497 47 1 4.0672 1.8138 -2.5968 48 1 3.9008 0.5030 -1.3956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033974607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:01 Heat of formation + Delta-G solvation = -96.259284 kcal Electronic energy + Delta-G solvation = -30438.851975 eV Core-core repulsion = 26428.179326 eV Total energy + Delta-G solvation = -4010.672650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.75322 -39.33967 -38.14069 -37.34742 -36.99916 -36.03907 -33.90112 -32.89813 -32.24981 -30.90165 -29.29844 -28.41365 -26.41252 -24.75379 -24.32819 -22.63010 -22.26633 -21.76614 -19.85013 -19.58804 -18.84373 -18.54390 -17.84078 -17.25133 -16.97209 -16.71605 -16.63155 -16.25520 -16.03852 -15.66172 -15.13282 -15.00296 -14.62749 -14.41449 -14.19799 -14.01451 -13.78993 -13.62272 -13.54231 -13.31460 -13.16923 -13.13750 -13.02025 -13.00519 -12.83874 -12.76265 -12.65980 -12.34318 -12.28735 -12.06675 -12.03587 -11.94340 -11.79334 -11.66997 -11.56326 -11.40445 -10.90337 -10.71059 -10.58362 -9.64529 -8.71469 -7.83663 -5.18653 -0.85903 1.47751 1.49294 1.56918 1.58063 1.81392 1.96720 2.51780 2.77796 2.98429 3.35930 3.39837 3.53139 3.61913 3.71685 3.75681 3.88026 3.99204 4.02438 4.10258 4.15328 4.24841 4.31656 4.41640 4.44816 4.54755 4.63220 4.70652 4.72417 4.79273 4.89221 4.93045 4.95793 5.02487 5.04137 5.08723 5.12239 5.20273 5.26075 5.31500 5.53689 5.59603 5.72495 5.92634 6.29183 6.51717 7.15612 7.17209 7.83131 8.48422 9.26670 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002974 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.939542 B = 9412.741412 C = 9895.322272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 N -0.588 5.588 4 C 0.519 3.481 5 O -0.577 6.577 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.586 4.586 9 S 2.414 3.586 10 O -0.983 6.983 11 O -0.982 6.982 12 C -0.584 4.584 13 C -0.115 4.115 14 C 0.128 3.872 15 H 0.145 0.855 16 C -0.149 4.149 17 C 0.161 3.839 18 N -0.619 5.619 19 C -0.239 4.239 20 H 0.075 0.925 21 C -0.054 4.054 22 N -0.940 5.940 23 Si 0.966 3.034 24 H -0.292 1.292 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.119 3.881 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.025 0.975 45 H 0.031 0.969 46 H 0.246 0.754 47 H 0.051 0.949 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 15.035 10.082 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 N -0.319 5.319 4 C 0.308 3.692 5 O -0.457 6.457 6 C -0.149 4.149 7 C -0.131 4.131 8 C -0.717 4.717 9 S 2.601 3.399 10 O -0.980 6.980 11 O -0.979 6.979 12 C -0.715 4.715 13 C -0.153 4.153 14 C 0.025 3.975 15 H 0.163 0.837 16 C -0.188 4.188 17 C 0.036 3.964 18 N -0.346 5.346 19 C -0.368 4.368 20 H 0.093 0.907 21 C -0.248 4.248 22 N -0.588 5.588 23 Si 0.796 3.204 24 H -0.220 1.220 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.006 4.006 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.168 0.832 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.519 15.421 10.878 19.197 hybrid contribution 0.257 -2.111 -1.170 2.427 sum 3.776 13.310 9.709 16.902 Atomic orbital electron populations 1.22119 0.95396 1.02074 1.01720 1.21363 0.94889 0.82948 1.01991 1.48020 1.63780 1.13601 1.06480 1.20903 0.76510 0.89214 0.82538 1.90677 1.52319 1.70741 1.31921 1.21669 1.02441 0.90740 1.00067 1.21043 1.02269 0.94644 0.95149 1.30112 1.16040 1.10104 1.15406 1.07884 0.76274 0.76826 0.78931 1.93542 1.49635 1.87489 1.67333 1.93557 1.74531 1.43907 1.85873 1.30099 1.14441 1.06089 1.20850 1.21427 0.97498 0.91732 1.04659 1.22441 0.95535 0.97078 0.82446 0.83738 1.23432 0.97801 0.98860 0.98712 1.21703 0.85091 0.91950 0.97607 1.44659 1.03015 1.48599 1.38325 1.19289 0.93647 1.09143 1.14741 0.90713 1.25546 0.96271 1.00274 1.02751 1.70097 1.03473 1.38894 1.46341 0.85246 0.77397 0.79287 0.78489 1.21975 1.22414 1.19455 1.21851 0.94086 0.93704 0.91009 0.92848 0.91591 0.92392 0.90477 0.92204 0.83858 0.88948 0.90384 0.83206 0.81334 0.80921 0.82520 0.87471 0.89705 0.89789 0.89101 0.95630 0.95076 0.94511 0.93123 0.96362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.24 71.98 0.66 -4.24 16 2 C 0.11 3.73 5.01 86.38 0.43 4.16 16 3 N -0.59 -15.95 2.44 -791.26 -1.93 -17.88 16 4 C 0.52 12.95 6.86 87.66 0.60 13.55 16 5 O -0.58 -18.77 15.57 -3.03 -0.05 -18.81 16 6 C -0.13 -1.87 1.44 -11.81 -0.02 -1.88 16 7 C -0.09 -1.31 4.39 30.47 0.13 -1.17 16 8 C -0.59 -4.91 6.34 71.99 0.46 -4.45 16 9 S 2.41 32.22 5.31 -56.49 -0.30 31.92 16 10 O -0.98 -22.06 17.96 -127.40 -2.29 -24.35 16 11 O -0.98 -19.86 18.11 -127.40 -2.31 -22.17 16 12 C -0.58 -4.30 6.34 72.00 0.46 -3.84 16 13 C -0.11 -1.41 4.55 30.47 0.14 -1.27 16 14 C 0.13 3.15 2.48 46.18 0.11 3.27 16 15 H 0.15 2.11 4.99 -2.39 -0.01 2.10 16 16 C -0.15 -4.16 5.36 32.15 0.17 -3.99 16 17 C 0.16 6.74 4.25 87.02 0.37 7.11 16 18 N -0.62 -27.67 2.88 -691.05 -1.99 -29.66 16 19 C -0.24 -12.28 10.23 84.03 0.86 -11.42 16 20 H 0.08 3.74 7.83 -2.91 -0.02 3.71 16 21 C -0.05 -2.88 5.47 84.86 0.46 -2.42 16 22 N -0.94 -52.63 10.59 21.65 0.23 -52.40 16 23 Si 0.97 43.59 29.55 68.60 2.03 45.62 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 27 C 0.12 3.99 6.14 86.73 0.53 4.53 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.13 4.78 -2.38 -0.01 2.12 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.08 3.14 5.07 -2.39 -0.01 3.13 16 32 H 0.06 2.08 7.53 -2.39 -0.02 2.07 16 33 H 0.14 1.07 6.96 -2.39 -0.02 1.06 16 34 H 0.09 1.44 7.90 -2.39 -0.02 1.42 16 35 H 0.08 1.35 8.02 -2.39 -0.02 1.33 16 36 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.17 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.17 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.16 0.79 8.14 -2.39 -0.02 0.78 16 40 H 0.11 1.31 5.26 -2.39 -0.01 1.29 16 41 H 0.08 1.24 8.02 -2.39 -0.02 1.22 16 42 H 0.08 2.11 6.81 -2.39 -0.02 2.09 16 43 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.03 1.27 6.97 -2.39 -0.02 1.25 16 45 H 0.03 1.41 3.94 -2.39 -0.01 1.40 16 46 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 47 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.02 0.67 7.85 -2.39 -0.02 0.65 16 Total: -1.00 -78.88 367.24 -0.26 -79.14 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.97 Total: 10.67 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 5.38 Total: -2.08 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.69 Total: -99.94 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -4.64 Total: -65.33 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 32.22 SS G_CDS: -0.30 Total: 31.92 kcal Total: -78.88 -0.26 -79.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033974607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.121 kcal (2) G-P(sol) polarization free energy of solvation -78.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds