Wall clock time and date at job start Wed Apr 1 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00058 * 2 1 4 4 H 1.09007 * 109.47060 * 329.99436 * 3 2 1 5 5 C 1.52994 * 109.47421 * 89.99577 * 3 2 1 6 6 C 1.50707 * 109.47327 * 210.00012 * 3 2 1 7 7 O 1.21284 * 119.99417 * 349.06632 * 6 3 2 8 8 N 1.34773 * 119.99815 * 169.06969 * 6 3 2 9 9 C 1.44585 * 118.64015 * 173.92000 * 8 6 3 10 10 C 1.54866 * 109.60120 * 270.74818 * 9 8 6 11 11 C 1.47094 * 110.31909 * 288.73185 * 10 9 8 12 12 C 1.52570 * 114.32423 * 62.80271 * 11 10 9 13 13 H 1.08998 * 109.48823 * 34.95191 * 12 11 10 14 14 N 1.46500 * 109.48774 * 155.02042 * 12 11 10 15 15 C 1.34780 * 119.99725 * 204.88706 * 14 12 11 16 16 O 1.21287 * 120.00145 * 359.97438 * 15 14 12 17 17 C 1.50697 * 119.99862 * 180.02562 * 15 14 12 18 18 S 1.81003 * 109.47230 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00275 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99743 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00043 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99763 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00287 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47067 * 89.99881 * 23 21 19 25 25 H 1.48493 * 109.47429 * 210.00447 * 23 21 19 26 26 H 1.48505 * 109.46937 * 330.00162 * 23 21 19 27 27 C 1.50879 * 109.35832 * 274.98727 * 12 11 10 28 28 C 1.47598 * 118.64843 * 353.93443 * 8 6 3 29 29 H 1.09003 * 109.46795 * 60.00403 * 1 2 3 30 30 H 1.09006 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47514 * 300.00158 * 1 2 3 32 32 H 1.08999 * 109.47355 * 177.55494 * 5 3 2 33 33 H 1.09007 * 109.47081 * 297.55643 * 5 3 2 34 34 H 1.09004 * 109.46966 * 57.55564 * 5 3 2 35 35 H 1.09004 * 109.44494 * 30.78578 * 9 8 6 36 36 H 1.08997 * 109.44940 * 150.72945 * 9 8 6 37 37 H 1.08994 * 109.32886 * 48.99445 * 10 9 8 38 38 H 1.09000 * 109.32564 * 168.47316 * 10 9 8 39 39 H 1.08995 * 108.50828 * 184.05519 * 11 10 9 40 40 H 1.08995 * 108.51114 * 301.70627 * 11 10 9 41 41 H 0.96997 * 120.00521 * 24.88422 * 14 12 11 42 42 H 1.08999 * 109.47165 * 299.99346 * 17 15 14 43 43 H 1.08996 * 109.47455 * 59.99946 * 17 15 14 44 44 H 0.96998 * 120.00203 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.36532 * 331.69546 * 27 12 11 46 46 H 1.09004 * 109.36283 * 212.07993 * 27 12 11 47 47 H 1.09000 * 108.94477 * 17.16977 * 28 8 6 48 48 H 1.08989 * 108.95251 * 258.53713 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5140 5 6 2.2176 1.7715 1.4424 6 6 3.3387 1.2639 -0.7104 7 8 3.8407 0.1973 -0.9956 8 7 3.9688 2.4120 -1.0287 9 6 5.2999 2.3397 -1.5886 10 6 6.3455 2.3552 -0.4464 11 6 6.4097 3.6896 0.1693 12 6 5.1132 4.1362 0.8381 13 1 4.6181 3.2735 1.2838 14 7 5.4149 5.1200 1.8808 15 6 4.5668 5.2874 2.9149 16 8 3.5537 4.6239 2.9819 17 6 4.8768 6.2998 3.9873 18 16 3.5580 6.2886 5.2270 19 6 4.1609 7.5263 6.3264 20 1 5.0940 8.0277 6.1156 21 6 3.4368 7.8570 7.4634 22 7 3.8871 8.7821 8.2845 23 14 1.8227 6.9904 7.8277 24 1 2.0846 5.7807 8.6484 25 1 0.9247 7.9090 8.5725 26 1 1.1757 6.5923 6.5517 27 6 4.2065 4.7590 -0.1946 28 6 3.2718 3.6911 -0.7911 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.7006 2.7486 1.4427 33 1 1.2521 1.8432 1.9434 34 1 2.8477 1.0545 1.9688 35 1 5.4027 1.4186 -2.1624 36 1 5.4652 3.1955 -2.2432 37 1 6.0647 1.6221 0.3097 38 1 7.3245 2.0966 -0.8500 39 1 7.2023 3.6876 0.9175 40 1 6.6660 4.4150 -0.6029 41 1 6.2249 5.6508 1.8272 42 1 5.8246 6.0471 4.4624 43 1 4.9470 7.2918 3.5411 44 1 3.3809 9.0135 9.0789 45 1 4.8107 5.1954 -0.9900 46 1 3.6092 5.5414 0.2737 47 1 2.4443 3.5206 -0.1023 48 1 2.8731 4.0580 -1.7367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:00 Heat of formation + Delta-G solvation = -113.435232 kcal Electronic energy + Delta-G solvation = -29209.673549 eV Core-core repulsion = 25198.256095 eV Total energy + Delta-G solvation = -4011.417455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -41.04173 -39.58364 -38.20857 -37.27164 -35.04371 -33.79981 -32.47747 -31.94191 -31.48951 -29.22446 -27.11969 -26.97422 -25.70175 -25.28613 -24.02690 -22.12089 -20.99068 -20.48960 -19.17202 -17.90742 -17.84228 -17.18310 -16.70123 -16.43986 -15.93847 -15.68663 -15.35920 -15.19704 -15.02482 -14.86204 -14.51925 -14.13603 -13.95683 -13.62249 -13.51679 -13.36311 -13.09447 -12.91391 -12.83228 -12.66735 -12.42772 -12.17658 -12.00817 -11.93239 -11.58930 -11.41661 -11.30268 -11.23901 -11.05186 -11.01951 -10.89588 -10.62526 -10.17955 -9.89660 -9.66278 -9.55176 -9.19528 -9.03841 -8.85123 -8.54972 -6.95906 -6.32583 -4.04563 2.34839 2.50533 2.70776 2.89481 3.24539 3.30387 3.45904 3.56214 3.60235 4.17539 4.25533 4.29144 4.48294 4.58778 4.59461 4.67479 4.71048 4.79672 4.82011 4.95632 5.06582 5.06927 5.08710 5.13317 5.21775 5.23482 5.35019 5.36454 5.41533 5.49862 5.56522 5.59544 5.65621 5.68369 5.71047 5.84911 5.85647 5.96138 5.98794 6.16826 6.32555 6.50857 6.75951 7.03275 7.54918 7.90481 7.94305 8.38047 8.41942 9.13513 10.76758 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002908 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.114512 B = 9627.744907 C =11244.751705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.068 3.932 4 H 0.083 0.917 5 C -0.177 4.177 6 C 0.516 3.484 7 O -0.519 6.519 8 N -0.606 5.606 9 C 0.115 3.885 10 C -0.132 4.132 11 C -0.127 4.127 12 C 0.147 3.853 13 H 0.091 0.909 14 N -0.734 5.734 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.125 4.125 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 C -0.143 4.143 28 C 0.100 3.900 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -10.365 -22.672 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.007 3.993 4 H 0.100 0.900 5 C -0.234 4.234 6 C 0.303 3.697 7 O -0.393 6.393 8 N -0.342 5.342 9 C -0.008 4.008 10 C -0.171 4.171 11 C -0.165 4.165 12 C 0.042 3.958 13 H 0.109 0.891 14 N -0.388 5.388 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.276 4.276 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 C -0.182 4.182 28 C -0.022 4.022 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.671 -12.102 -22.549 25.601 hybrid contribution 0.769 1.317 0.416 1.580 sum 0.098 -10.785 -22.133 24.622 Atomic orbital electron populations 1.22885 0.80592 1.03192 1.00175 1.88028 1.19682 1.25282 1.95011 1.22037 0.93226 0.86614 0.97426 0.89973 1.22390 1.04103 1.03216 0.93726 1.20514 0.86763 0.83861 0.78612 1.90698 1.67179 1.29205 1.52211 1.47687 1.16854 1.05910 1.63703 1.21472 0.80636 1.03325 0.95348 1.21142 0.99767 0.97254 0.98939 1.20744 0.97248 0.97993 1.00466 1.20388 0.95442 0.92195 0.87743 0.89058 1.46147 1.26228 1.42033 1.24362 1.20286 0.83034 0.83297 0.81585 1.90666 1.25787 1.46294 1.76479 1.23286 1.05219 1.00497 0.98570 1.84747 1.28744 1.53843 1.24054 1.22315 1.11917 1.23266 1.09476 0.89421 1.24717 0.97821 0.94169 0.94613 1.69936 1.38991 1.29909 1.12850 0.86732 0.83753 0.80158 0.81172 1.19204 1.19945 1.15952 1.22225 0.98873 0.98248 0.98842 1.22166 0.95522 0.83322 1.01205 0.93987 0.89178 0.93509 0.89119 0.90918 0.91171 0.89499 0.90363 0.91306 0.90214 0.91185 0.91485 0.76705 0.88601 0.88525 0.91912 0.91006 0.89372 0.89019 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.60 9.90 -54.90 -0.54 -5.14 16 3 C 0.07 0.76 2.27 -27.88 -0.06 0.70 16 4 H 0.08 0.71 6.80 -51.93 -0.35 0.35 16 5 C -0.18 -2.09 9.09 37.15 0.34 -1.75 16 6 C 0.52 6.39 6.94 -10.98 -0.08 6.31 16 7 O -0.52 -8.33 15.94 -14.11 -0.22 -8.55 16 8 N -0.61 -5.67 2.24 -172.54 -0.39 -6.06 16 9 C 0.12 0.92 5.43 -4.08 -0.02 0.90 16 10 C -0.13 -1.04 5.74 -28.58 -0.16 -1.20 16 11 C -0.13 -0.93 4.70 -29.79 -0.14 -1.07 16 12 C 0.15 1.43 2.06 -69.22 -0.14 1.28 16 13 H 0.09 1.13 5.42 -51.93 -0.28 0.85 16 14 N -0.73 -8.06 4.93 -55.06 -0.27 -8.33 16 15 C 0.53 8.40 7.66 -10.99 -0.08 8.32 16 16 O -0.52 -9.71 14.91 5.55 0.08 -9.62 16 17 C -0.13 -2.25 6.16 36.00 0.22 -2.03 16 18 S -0.14 -3.40 18.55 -107.50 -1.99 -5.39 16 19 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 20 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 21 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 22 N -0.88 -26.21 13.97 55.49 0.78 -25.44 16 23 Si 0.86 21.33 27.74 -169.99 -4.71 16.62 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 27 C -0.14 -1.16 5.38 -27.30 -0.15 -1.30 16 28 C 0.10 0.78 5.34 -2.95 -0.02 0.77 16 29 H 0.04 0.29 8.09 -51.93 -0.42 -0.12 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.36 7.92 -51.93 -0.41 -0.05 16 32 H 0.09 1.12 3.97 -51.93 -0.21 0.92 16 33 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.81 7.22 -51.93 -0.38 0.43 16 36 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.52 8.04 -51.93 -0.42 0.11 16 40 H 0.07 0.39 7.35 -51.93 -0.38 0.00 16 41 H 0.40 3.36 8.60 -40.82 -0.35 3.01 16 42 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 43 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 0.45 7.31 -51.93 -0.38 0.07 16 46 H 0.09 0.85 7.84 -51.93 -0.41 0.44 16 47 H 0.09 0.77 4.18 -51.93 -0.22 0.56 16 48 H 0.07 0.42 8.14 -51.94 -0.42 0.00 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -35.53 388.33 -7.98 -43.51 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.57 Total: 2.03 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 1.01 Total: 0.52 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.12 Total: -39.83 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.69 Total: -23.32 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.53 -7.98 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.924 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds