Wall clock time and date at job start Wed Apr 1 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47156 * 2 1 4 4 C 1.50702 * 109.47032 * 119.99875 * 2 1 3 5 5 O 1.21284 * 120.00126 * 119.99611 * 4 2 1 6 6 N 1.34780 * 120.00179 * 300.00268 * 4 2 1 7 7 C 1.46497 * 120.00009 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.88934 * 37.42259 * 7 6 4 9 9 C 1.54906 * 111.00207 * 273.53995 * 7 6 4 10 10 N 1.47427 * 104.83302 * 204.91733 * 9 7 6 11 11 C 1.36934 * 125.64760 * 204.09847 * 10 9 7 12 12 H 1.07997 * 120.00239 * 351.28229 * 11 10 9 13 13 C 1.38817 * 119.99822 * 171.29239 * 11 10 9 14 14 N 1.31620 * 120.00015 * 164.58539 * 13 11 10 15 15 Si 1.86799 * 119.99835 * 344.30666 * 13 11 10 16 16 H 1.48494 * 109.47004 * 185.79088 * 15 13 11 17 17 H 1.48506 * 109.47205 * 305.78771 * 15 13 11 18 18 H 1.48497 * 109.47199 * 65.79030 * 15 13 11 19 19 C 1.47018 * 108.70103 * 24.35915 * 10 9 7 20 20 C 1.54334 * 107.26557 * 358.58635 * 19 10 9 21 21 H 1.08998 * 110.66693 * 96.52316 * 20 19 10 22 22 O 1.42900 * 110.84784 * 219.67305 * 20 19 10 23 23 N 1.46499 * 109.47112 * 239.99868 * 2 1 3 24 24 C 1.36038 * 126.35049 * 299.68761 * 23 2 1 25 25 N 1.30104 * 110.10221 * 179.87661 * 24 23 2 26 26 C 1.35782 * 109.64531 * 0.39735 * 25 24 23 27 27 C 1.39739 * 133.60689 * 179.76108 * 26 25 24 28 28 C 1.36604 * 119.88520 * 179.97438 * 27 26 25 29 29 C 1.38771 * 120.67296 * 359.97438 * 28 27 26 30 30 C 1.37857 * 120.45176 * 0.04631 * 29 28 27 31 31 C 1.38052 * 126.34977 * 120.00539 * 23 2 1 32 32 H 1.08998 * 109.47650 * 300.00136 * 1 2 3 33 33 H 1.09002 * 109.47126 * 59.99978 * 1 2 3 34 34 H 1.08999 * 109.47156 * 180.02562 * 1 2 3 35 35 H 0.97000 * 119.99698 * 359.97438 * 6 4 2 36 36 H 1.09006 * 110.36654 * 86.08043 * 9 7 6 37 37 H 1.08997 * 110.46763 * 323.80768 * 9 7 6 38 38 H 0.97003 * 119.99843 * 355.00480 * 14 13 11 39 39 H 1.09003 * 109.88444 * 118.12847 * 19 10 9 40 40 H 1.09007 * 109.88372 * 239.29491 * 19 10 9 41 41 H 0.96699 * 114.00067 * 293.69057 * 22 20 19 42 42 H 1.08006 * 124.94751 * 0.02562 * 24 23 2 43 43 H 1.07996 * 120.05631 * 0.02562 * 27 26 25 44 44 H 1.07999 * 119.66170 * 180.02562 * 28 27 26 45 45 H 1.08001 * 119.77371 * 180.02562 * 29 28 27 46 46 H 1.07995 * 120.15753 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 1 3.2105 -1.3063 3.5013 9 6 1.2426 -2.0952 4.0522 10 7 1.4640 -2.2814 5.4978 11 6 1.2257 -3.4327 6.1998 12 1 0.7131 -4.2573 5.7269 13 6 1.6430 -3.5399 7.5195 14 7 1.1636 -4.4968 8.2856 15 14 2.8906 -2.3308 8.2056 16 1 3.2725 -2.7407 9.5809 17 1 4.0970 -2.3194 7.3396 18 1 2.2944 -0.9713 8.2419 19 6 1.9769 -1.0244 6.0620 20 6 2.1112 -0.0208 4.8973 21 1 1.2345 0.6245 4.8425 22 8 3.3021 0.7577 5.0315 23 7 2.0183 -0.6906 -1.1961 24 6 1.7755 -1.9855 -1.5352 25 7 2.3596 -2.2697 -2.6624 26 6 3.0251 -1.1780 -3.1197 27 6 3.8063 -0.9294 -4.2513 28 6 4.3573 0.3063 -4.4400 29 6 4.1496 1.3223 -3.5179 30 6 3.3829 1.0998 -2.3940 31 6 2.8153 -0.1498 -2.1852 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.1493 0.5389 2.5436 36 1 1.4991 -3.0047 3.5089 37 1 0.2060 -1.8188 3.8597 38 1 0.4659 -5.0820 7.9513 39 1 1.2794 -0.6402 6.8063 40 1 2.9526 -1.1935 6.5177 41 1 3.3007 1.3500 5.7958 42 1 1.1820 -2.6762 -0.9545 43 1 3.9734 -1.7125 -4.9759 44 1 4.9601 0.4946 -5.3161 45 1 4.5919 2.2939 -3.6817 46 1 3.2247 1.8938 -1.6793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077940331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:04 Heat of formation + Delta-G solvation = 41.191359 kcal Electronic energy + Delta-G solvation = -30074.676989 eV Core-core repulsion = 25966.813447 eV Total energy + Delta-G solvation = -4107.863543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -42.42653 -40.18573 -38.51083 -37.42700 -35.53459 -35.15757 -34.49303 -32.24123 -31.64423 -29.75093 -29.43606 -28.71995 -27.96615 -25.31241 -23.97486 -23.41404 -22.32530 -21.87889 -21.35171 -20.40459 -20.01386 -18.07078 -17.79532 -17.49149 -17.35338 -16.86357 -16.19788 -15.98117 -15.62105 -15.24466 -14.99066 -14.65981 -14.34492 -14.14676 -13.95319 -13.78337 -13.72859 -13.43712 -13.14073 -12.97043 -12.83407 -12.52089 -12.36980 -12.22445 -12.03108 -11.94196 -11.80058 -11.59540 -11.30707 -10.83911 -10.76900 -10.35724 -10.15998 -10.08432 -9.95871 -9.45510 -9.20833 -9.09192 -8.80222 -8.53360 -8.28933 -7.20428 -6.41349 -3.34149 0.79398 1.31411 2.12487 2.27784 2.63203 2.95503 3.26768 3.44103 3.62729 3.71991 4.04582 4.10452 4.11987 4.27005 4.31591 4.39317 4.52172 4.65081 4.72572 4.82298 5.00265 5.01053 5.03794 5.08357 5.16061 5.22748 5.24250 5.33725 5.35710 5.46380 5.54705 5.62415 5.67433 5.91481 6.08848 6.21211 6.21408 6.26045 6.30639 6.34670 6.38674 6.50754 6.67185 6.88619 7.23377 7.48367 7.62533 7.74584 7.92105 8.22278 8.91900 9.41381 10.05674 11.09061 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002504 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.712595 B =11180.299982 C =11634.285081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.124 0.876 4 C 0.501 3.499 5 O -0.514 6.514 6 N -0.707 5.707 7 C 0.137 3.863 8 H 0.107 0.893 9 C 0.132 3.868 10 N -0.605 5.605 11 C -0.325 4.325 12 H 0.082 0.918 13 C -0.020 4.020 14 N -0.923 5.923 15 Si 1.070 2.930 16 H -0.299 1.299 17 H -0.295 1.295 18 H -0.290 1.290 19 C 0.083 3.917 20 C 0.087 3.913 21 H 0.071 0.929 22 O -0.559 6.559 23 N -0.476 5.476 24 C 0.294 3.706 25 N -0.501 5.501 26 C 0.050 3.950 27 C -0.065 4.065 28 C -0.131 4.131 29 C -0.106 4.106 30 C -0.110 4.110 31 C 0.048 3.952 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.399 0.601 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.380 0.620 42 H 0.209 0.791 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 18.100 -20.600 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.142 0.858 4 C 0.284 3.716 5 O -0.388 6.388 6 N -0.359 5.359 7 C 0.032 3.968 8 H 0.125 0.875 9 C 0.004 3.996 10 N -0.334 5.334 11 C -0.452 4.452 12 H 0.100 0.900 13 C -0.220 4.220 14 N -0.564 5.564 15 Si 0.904 3.096 16 H -0.227 1.227 17 H -0.223 1.223 18 H -0.217 1.217 19 C -0.043 4.043 20 C 0.027 3.973 21 H 0.089 0.911 22 O -0.364 6.364 23 N -0.166 5.166 24 C 0.009 3.991 25 N -0.219 5.219 26 C -0.068 4.068 27 C -0.084 4.084 28 C -0.151 4.151 29 C -0.125 4.125 30 C -0.131 4.131 31 C -0.061 4.061 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.227 0.773 42 H 0.225 0.775 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.862 16.576 -20.143 26.101 hybrid contribution -1.306 1.042 -0.144 1.677 sum -0.444 17.619 -20.287 26.873 Atomic orbital electron populations 1.22174 0.90623 1.04676 1.04380 1.21232 0.96953 0.97603 0.82662 0.85849 1.20487 0.81106 0.85395 0.84569 1.90827 1.36493 1.25407 1.86119 1.45797 1.53269 1.31707 1.05124 1.22372 1.00555 0.92340 0.81519 0.87508 1.21901 0.95448 0.95792 0.86409 1.44614 1.77792 1.08637 1.02372 1.20181 1.36789 0.92581 0.95673 0.90002 1.25853 1.02159 1.01585 0.92376 1.70891 1.28581 1.20159 1.36765 0.83844 0.76354 0.74492 0.74903 1.22739 1.22328 1.21738 1.22705 0.98589 0.87718 0.95258 1.23059 0.87179 0.91824 0.95221 0.91145 1.86521 1.39821 1.58292 1.51796 1.45049 1.42102 1.11581 1.17914 1.25222 0.97665 0.83546 0.92683 1.70523 1.14066 1.26599 1.10711 1.19090 1.01379 0.89750 0.96606 1.20027 0.95898 0.97328 0.95194 1.20622 1.01510 0.92850 1.00138 1.20844 0.98575 0.99399 0.93723 1.19932 1.00282 0.93584 0.99331 1.18879 0.98745 0.96816 0.91627 0.89533 0.90312 0.90607 0.76612 0.92410 0.95127 0.92668 0.92940 0.93838 0.77295 0.77455 0.85434 0.85474 0.85397 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.15 37.16 0.34 -0.60 16 2 C 0.12 1.07 3.40 -69.08 -0.23 0.84 16 3 H 0.12 0.80 7.62 -51.93 -0.40 0.40 16 4 C 0.50 6.24 7.12 -10.98 -0.08 6.17 16 5 O -0.51 -8.96 15.21 5.55 0.08 -8.87 16 6 N -0.71 -8.10 5.12 -51.73 -0.26 -8.36 16 7 C 0.14 2.21 3.04 -65.79 -0.20 2.01 16 8 H 0.11 2.07 7.73 -51.93 -0.40 1.67 16 9 C 0.13 2.54 6.92 -2.53 -0.02 2.52 16 10 N -0.61 -14.31 3.33 -170.06 -0.57 -14.88 16 11 C -0.33 -9.16 10.56 -15.06 -0.16 -9.32 16 12 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 13 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16 14 N -0.92 -28.63 13.70 55.49 0.76 -27.87 16 15 Si 1.07 26.22 24.54 -169.99 -4.17 22.05 16 16 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 17 H -0.29 -7.15 6.83 56.52 0.39 -6.76 16 18 H -0.29 -6.23 5.44 56.52 0.31 -5.93 16 19 C 0.08 1.68 4.41 -3.06 -0.01 1.67 16 20 C 0.09 1.31 3.94 -24.89 -0.10 1.21 16 21 H 0.07 0.84 7.99 -51.93 -0.42 0.42 16 22 O -0.56 -7.83 13.39 -35.23 -0.47 -8.30 16 23 N -0.48 -5.52 2.45 -109.94 -0.27 -5.79 16 24 C 0.29 3.80 10.70 -89.79 -0.96 2.84 16 25 N -0.50 -7.45 11.27 -12.05 -0.14 -7.59 16 26 C 0.05 0.68 7.23 -84.70 -0.61 0.07 16 27 C -0.06 -0.73 10.05 -39.61 -0.40 -1.13 16 28 C -0.13 -1.17 9.96 -39.97 -0.40 -1.56 16 29 C -0.11 -0.90 10.03 -39.52 -0.40 -1.30 16 30 C -0.11 -1.09 9.89 -39.50 -0.39 -1.48 16 31 C 0.05 0.59 6.87 -83.99 -0.58 0.01 16 32 H 0.09 0.34 7.56 -51.93 -0.39 -0.06 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.50 7.95 -51.93 -0.41 0.08 16 35 H 0.40 3.06 7.93 -40.82 -0.32 2.74 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.26 8.06 8.73 -40.82 -0.36 7.71 16 39 H 0.05 1.07 6.82 -51.93 -0.35 0.72 16 40 H 0.04 0.97 3.64 -51.93 -0.19 0.78 16 41 H 0.38 3.60 9.12 45.56 0.42 4.01 16 42 H 0.21 2.24 8.06 -52.48 -0.42 1.81 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.89 7.76 -52.49 -0.41 0.48 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -38.12 374.76 -9.20 -47.32 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.52 Total: 5.35 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -4.29 Total: 1.29 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.48 Total: -64.49 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.39 Total: -17.17 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -4.17 Total: 22.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.12 -9.20 -47.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077940331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.511 kcal (2) G-P(sol) polarization free energy of solvation -38.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds