Wall clock time and date at job start Wed Apr 1 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47573 * 2 1 4 4 C 1.50700 * 109.47033 * 239.99971 * 2 1 3 5 5 O 1.21287 * 120.00381 * 240.00019 * 4 2 1 6 6 N 1.34781 * 120.00044 * 60.00346 * 4 2 1 7 7 C 1.46500 * 120.00180 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47145 * 179.97438 * 7 6 4 9 9 O 1.42898 * 113.28263 * 313.06835 * 8 7 6 10 10 C 1.53496 * 114.20377 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98324 * 220.34657 * 10 8 7 12 12 C 1.36944 * 136.05683 * 207.08528 * 11 10 8 13 13 H 1.08004 * 119.99874 * 6.90177 * 12 11 10 14 14 C 1.38808 * 119.99887 * 186.89762 * 12 11 10 15 15 N 1.31620 * 119.99758 * 172.36849 * 14 12 11 16 16 Si 1.86803 * 120.00116 * 352.64805 * 14 12 11 17 17 H 1.48502 * 109.46980 * 175.03997 * 16 14 12 18 18 H 1.48501 * 109.46832 * 295.03703 * 16 14 12 19 19 H 1.48495 * 109.47214 * 55.03946 * 16 14 12 20 20 C 1.47058 * 87.88471 * 27.34220 * 11 10 8 21 21 N 1.46497 * 109.47000 * 120.00092 * 2 1 3 22 22 C 1.36041 * 126.34645 * 60.02436 * 21 2 1 23 23 N 1.30116 * 110.09931 * 179.97438 * 22 21 2 24 24 C 1.35792 * 109.64179 * 0.02562 * 23 22 21 25 25 C 1.39738 * 133.59852 * 180.02562 * 24 23 22 26 26 C 1.36597 * 119.88308 * 179.97438 * 25 24 23 27 27 C 1.38773 * 120.67441 * 0.02562 * 26 25 24 28 28 C 1.37856 * 120.44822 * 359.97438 * 27 26 25 29 29 C 1.38053 * 126.35265 * 239.71057 * 21 2 1 30 30 H 1.09000 * 109.47055 * 59.99631 * 1 2 3 31 31 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47075 * 300.00067 * 1 2 3 33 33 H 0.96997 * 119.99638 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.46590 * 60.00281 * 7 6 4 35 35 H 1.08999 * 109.47215 * 300.00606 * 7 6 4 36 36 H 0.96696 * 114.00036 * 46.93477 * 9 8 7 37 37 H 1.09007 * 113.46615 * 105.56665 * 10 8 7 38 38 H 1.08994 * 113.47030 * 335.12782 * 10 8 7 39 39 H 0.96999 * 119.99710 * 5.38439 * 15 14 12 40 40 H 1.09000 * 113.46548 * 87.43715 * 20 11 10 41 41 H 1.09001 * 113.47037 * 217.87480 * 20 11 10 42 42 H 1.07997 * 124.95230 * 0.02562 * 22 21 2 43 43 H 1.08005 * 120.05650 * 359.92828 * 25 24 23 44 44 H 1.08003 * 119.66490 * 179.97438 * 26 25 24 45 45 H 1.07995 * 119.78178 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.15386 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6966 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 6 1.6849 -0.2193 -4.9000 9 8 0.2909 0.0899 -4.8436 10 6 2.1350 -0.8561 -6.2222 11 7 2.3391 0.5025 -6.7469 12 6 2.3197 1.0962 -7.9808 13 1 2.0029 0.5329 -8.8462 14 6 2.7070 2.4220 -8.1193 15 7 2.8330 2.9489 -9.3188 16 14 3.0570 3.4560 -6.6034 17 1 3.5644 4.7882 -7.0194 18 1 1.8068 3.6250 -5.8201 19 1 4.0780 2.7769 -5.7659 20 6 2.5796 0.9417 -5.3642 21 7 2.0183 -0.6906 1.1961 22 6 1.7708 -1.9839 1.5379 23 7 2.3591 -2.2696 2.6627 24 6 3.0243 -1.1777 3.1201 25 6 3.8056 -0.9293 4.2517 26 6 4.3572 0.3061 4.4401 27 6 4.1498 1.3222 3.5179 28 6 3.3826 1.0999 2.3943 29 6 2.8197 -0.1515 2.1825 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1488 0.5385 -2.5436 34 1 1.8324 -1.9680 -3.6509 35 1 3.2855 -0.9399 -3.6506 36 1 0.0104 0.4906 -4.0095 37 1 1.3424 -1.4039 -6.7321 38 1 3.0569 -1.4309 -6.1354 39 1 2.5806 2.4362 -10.1026 40 1 3.6188 0.8408 -5.0513 41 1 2.1659 1.9257 -5.1430 42 1 1.1739 -2.6734 0.9594 43 1 3.9725 -1.7125 4.9764 44 1 4.9601 0.4944 5.3162 45 1 4.5924 2.2936 3.6814 46 1 3.2247 1.8939 1.6794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271373708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:38 Heat of formation + Delta-G solvation = 72.179650 kcal Electronic energy + Delta-G solvation = -29756.050211 eV Core-core repulsion = 25649.530421 eV Total energy + Delta-G solvation = -4106.519789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.53067 -40.43025 -39.27646 -37.54899 -35.51804 -35.29432 -34.44991 -32.39393 -31.88317 -29.88045 -29.54161 -28.93857 -26.44182 -25.66366 -24.94693 -23.50510 -22.41579 -22.07206 -21.37788 -20.32887 -19.74743 -18.43414 -17.81774 -17.59205 -17.11165 -16.60003 -16.13071 -16.06708 -15.81117 -15.39790 -15.06173 -14.65759 -14.57729 -14.23080 -14.10950 -13.89223 -13.81615 -13.53014 -13.30801 -13.11983 -13.01596 -12.81866 -12.47571 -12.28688 -12.18667 -11.95678 -11.75164 -11.67884 -11.14250 -10.95688 -10.65617 -10.47515 -10.22311 -10.19937 -10.10713 -9.54582 -9.29896 -9.07925 -8.95409 -8.62074 -8.37259 -7.25728 -6.39496 -3.30519 0.71433 1.23722 1.99586 2.07010 2.51620 2.79877 3.27144 3.32794 3.54730 3.64257 3.88839 4.01455 4.09881 4.15790 4.18172 4.25671 4.43980 4.50382 4.61518 4.65222 4.76247 4.86400 4.91208 4.92166 5.14743 5.16671 5.25195 5.33152 5.36384 5.41653 5.46504 5.63220 5.82814 5.84649 5.96607 5.99987 6.09386 6.13401 6.22214 6.24573 6.26381 6.39633 6.59242 6.75606 6.95687 6.97657 7.61825 7.64124 7.72709 8.16322 8.89696 9.40993 10.24193 11.13260 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.002446 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.677808 B =11444.807564 C =12290.328711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 H 0.126 0.874 4 C 0.503 3.497 5 O -0.518 6.518 6 N -0.719 5.719 7 C 0.106 3.894 8 C 0.070 3.930 9 O -0.516 6.516 10 C 0.140 3.860 11 N -0.617 5.617 12 C -0.301 4.301 13 H 0.085 0.915 14 C -0.026 4.026 15 N -0.933 5.933 16 Si 1.073 2.927 17 H -0.294 1.294 18 H -0.295 1.295 19 H -0.288 1.288 20 C 0.077 3.923 21 N -0.477 5.477 22 C 0.291 3.709 23 N -0.500 5.500 24 C 0.049 3.951 25 C -0.065 4.065 26 C -0.130 4.130 27 C -0.104 4.104 28 C -0.111 4.111 29 C 0.049 3.951 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.361 0.639 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.262 0.738 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.208 0.792 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -4.332 27.153 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.013 3.987 3 H 0.144 0.856 4 C 0.286 3.714 5 O -0.392 6.392 6 N -0.373 5.373 7 C -0.019 4.019 8 C 0.027 3.973 9 O -0.319 6.319 10 C 0.013 3.987 11 N -0.344 5.344 12 C -0.427 4.427 13 H 0.102 0.898 14 C -0.225 4.225 15 N -0.575 5.575 16 Si 0.906 3.094 17 H -0.221 1.221 18 H -0.223 1.223 19 H -0.216 1.216 20 C -0.049 4.049 21 N -0.167 5.167 22 C 0.005 3.995 23 N -0.218 5.218 24 C -0.069 4.069 25 C -0.085 4.085 26 C -0.150 4.150 27 C -0.123 4.123 28 C -0.132 4.132 29 C -0.060 4.060 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.207 0.793 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.224 0.776 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.862 -4.421 27.127 27.634 hybrid contribution -0.747 -0.148 -0.713 1.043 sum -3.609 -4.569 26.414 27.048 Atomic orbital electron populations 1.22184 0.90491 1.04563 1.04674 1.21254 0.97067 0.97803 0.82544 0.85589 1.20519 0.81005 0.85282 0.84548 1.90807 1.36586 1.25609 1.86244 1.45884 1.53701 1.32134 1.05578 1.22045 1.00542 0.96948 0.82330 1.23351 0.82473 0.97750 0.93742 1.86715 1.21845 1.83291 1.40087 1.22336 0.97854 0.90194 0.88364 1.45703 1.83355 1.03598 1.01762 1.20119 1.43774 0.96376 0.82469 0.89775 1.25739 0.98693 0.94810 1.03215 1.70913 1.48166 1.41154 0.97265 0.83653 0.75723 0.75925 0.74062 1.22118 1.22300 1.21557 1.23496 0.97031 0.97017 0.87370 1.45023 1.41891 1.11736 1.18045 1.25166 0.97859 0.83582 0.92855 1.70516 1.13956 1.26623 1.10735 1.19072 1.01508 0.89764 0.96565 1.20027 0.95883 0.97348 0.95211 1.20643 1.01408 0.92830 1.00128 1.20876 0.98340 0.99472 0.93643 1.19967 1.00302 0.93541 0.99368 1.18876 0.98703 0.96820 0.91558 0.89433 0.90693 0.90125 0.76586 0.90103 0.89678 0.79327 0.92354 0.92620 0.92818 0.92855 0.92665 0.77576 0.85422 0.85408 0.85281 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 9.14 37.16 0.34 -0.35 16 2 C 0.12 0.86 3.40 -69.09 -0.23 0.63 16 3 H 0.13 0.67 7.63 -51.93 -0.40 0.28 16 4 C 0.50 4.97 7.12 -10.98 -0.08 4.90 16 5 O -0.52 -7.33 15.48 5.55 0.09 -7.24 16 6 N -0.72 -6.38 5.23 -60.29 -0.32 -6.70 16 7 C 0.11 1.25 5.42 -4.04 -0.02 1.23 16 8 C 0.07 1.07 1.74 -89.98 -0.16 0.91 16 9 O -0.52 -7.68 13.56 -35.23 -0.48 -8.16 16 10 C 0.14 2.61 8.10 -8.52 -0.07 2.54 16 11 N -0.62 -14.73 3.69 -184.62 -0.68 -15.42 16 12 C -0.30 -8.61 11.08 -15.06 -0.17 -8.77 16 13 H 0.08 2.54 8.05 -52.48 -0.42 2.12 16 14 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 15 N -0.93 -29.19 13.70 55.49 0.76 -28.43 16 16 Si 1.07 26.00 25.13 -169.99 -4.27 21.73 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -6.64 6.64 56.52 0.38 -6.26 16 19 H -0.29 -6.44 6.13 56.52 0.35 -6.09 16 20 C 0.08 1.49 5.14 -8.39 -0.04 1.45 16 21 N -0.48 -4.76 2.45 -109.94 -0.27 -5.03 16 22 C 0.29 3.19 10.71 -89.78 -0.96 2.23 16 23 N -0.50 -6.62 11.27 -12.05 -0.14 -6.76 16 24 C 0.05 0.61 7.23 -84.70 -0.61 0.00 16 25 C -0.07 -0.67 10.05 -39.61 -0.40 -1.06 16 26 C -0.13 -1.06 9.96 -39.98 -0.40 -1.46 16 27 C -0.10 -0.83 10.03 -39.52 -0.40 -1.22 16 28 C -0.11 -1.01 9.89 -39.50 -0.39 -1.40 16 29 C 0.05 0.54 6.87 -83.99 -0.58 -0.04 16 30 H 0.09 0.21 7.56 -51.93 -0.39 -0.19 16 31 H 0.07 0.34 7.95 -51.93 -0.41 -0.08 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 2.47 6.37 -40.82 -0.26 2.21 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 36 H 0.36 3.40 7.21 45.56 0.33 3.73 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 40 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 41 H 0.06 1.10 4.67 -51.93 -0.24 0.86 16 42 H 0.21 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.84 7.76 -52.48 -0.41 0.43 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -38.79 377.84 -9.49 -48.28 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.62 Total: 3.33 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -4.26 Total: -1.29 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.64 Total: -62.34 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.39 Total: -15.41 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.27 Total: 21.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.79 -9.49 -48.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271373708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.459 kcal (2) G-P(sol) polarization free energy of solvation -38.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds