Wall clock time and date at job start Wed Apr 1 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47573 * 2 1 4 4 C 1.50700 * 109.47033 * 239.99971 * 2 1 3 5 5 O 1.21287 * 120.00381 * 240.00019 * 4 2 1 6 6 N 1.34781 * 120.00044 * 60.00346 * 4 2 1 7 7 C 1.46500 * 120.00180 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47145 * 179.97438 * 7 6 4 9 9 O 1.42898 * 113.28263 * 313.06835 * 8 7 6 10 10 C 1.53496 * 114.20377 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98324 * 220.34657 * 10 8 7 12 12 C 1.36944 * 136.05683 * 207.08528 * 11 10 8 13 13 H 1.08004 * 119.99874 * 6.90177 * 12 11 10 14 14 C 1.38808 * 119.99887 * 186.89762 * 12 11 10 15 15 N 1.31620 * 119.99758 * 172.36849 * 14 12 11 16 16 Si 1.86803 * 120.00116 * 352.64805 * 14 12 11 17 17 H 1.48502 * 109.46980 * 175.03997 * 16 14 12 18 18 H 1.48501 * 109.46832 * 295.03703 * 16 14 12 19 19 H 1.48495 * 109.47214 * 55.03946 * 16 14 12 20 20 C 1.47058 * 87.88471 * 27.34220 * 11 10 8 21 21 N 1.46497 * 109.47000 * 120.00092 * 2 1 3 22 22 C 1.36041 * 126.34645 * 60.02436 * 21 2 1 23 23 N 1.30116 * 110.09931 * 179.97438 * 22 21 2 24 24 C 1.35792 * 109.64179 * 0.02562 * 23 22 21 25 25 C 1.39738 * 133.59852 * 180.02562 * 24 23 22 26 26 C 1.36597 * 119.88308 * 179.97438 * 25 24 23 27 27 C 1.38773 * 120.67441 * 0.02562 * 26 25 24 28 28 C 1.37856 * 120.44822 * 359.97438 * 27 26 25 29 29 C 1.38053 * 126.35265 * 239.71057 * 21 2 1 30 30 H 1.09000 * 109.47055 * 59.99631 * 1 2 3 31 31 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47075 * 300.00067 * 1 2 3 33 33 H 0.96997 * 119.99638 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.46590 * 60.00281 * 7 6 4 35 35 H 1.08999 * 109.47215 * 300.00606 * 7 6 4 36 36 H 0.96696 * 114.00036 * 46.93477 * 9 8 7 37 37 H 1.09007 * 113.46615 * 105.56665 * 10 8 7 38 38 H 1.08994 * 113.47030 * 335.12782 * 10 8 7 39 39 H 0.96999 * 119.99710 * 5.38439 * 15 14 12 40 40 H 1.09000 * 113.46548 * 87.43715 * 20 11 10 41 41 H 1.09001 * 113.47037 * 217.87480 * 20 11 10 42 42 H 1.07997 * 124.95230 * 0.02562 * 22 21 2 43 43 H 1.08005 * 120.05650 * 359.92828 * 25 24 23 44 44 H 1.08003 * 119.66490 * 179.97438 * 26 25 24 45 45 H 1.07995 * 119.78178 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.15386 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6966 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 6 1.6849 -0.2193 -4.9000 9 8 0.2909 0.0899 -4.8436 10 6 2.1350 -0.8561 -6.2222 11 7 2.3391 0.5025 -6.7469 12 6 2.3197 1.0962 -7.9808 13 1 2.0029 0.5329 -8.8462 14 6 2.7070 2.4220 -8.1193 15 7 2.8330 2.9489 -9.3188 16 14 3.0570 3.4560 -6.6034 17 1 3.5644 4.7882 -7.0194 18 1 1.8068 3.6250 -5.8201 19 1 4.0780 2.7769 -5.7659 20 6 2.5796 0.9417 -5.3642 21 7 2.0183 -0.6906 1.1961 22 6 1.7708 -1.9839 1.5379 23 7 2.3591 -2.2696 2.6627 24 6 3.0243 -1.1777 3.1201 25 6 3.8056 -0.9293 4.2517 26 6 4.3572 0.3061 4.4401 27 6 4.1498 1.3222 3.5179 28 6 3.3826 1.0999 2.3943 29 6 2.8197 -0.1515 2.1825 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1488 0.5385 -2.5436 34 1 1.8324 -1.9680 -3.6509 35 1 3.2855 -0.9399 -3.6506 36 1 0.0104 0.4906 -4.0095 37 1 1.3424 -1.4039 -6.7321 38 1 3.0569 -1.4309 -6.1354 39 1 2.5806 2.4362 -10.1026 40 1 3.6188 0.8408 -5.0513 41 1 2.1659 1.9257 -5.1430 42 1 1.1739 -2.6734 0.9594 43 1 3.9725 -1.7125 4.9764 44 1 4.9601 0.4944 5.3162 45 1 4.5924 2.2936 3.6814 46 1 3.2247 1.8939 1.6794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271373708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:35 Heat of formation + Delta-G solvation = 41.655716 kcal Electronic energy + Delta-G solvation = -29757.373828 eV Core-core repulsion = 25649.530421 eV Total energy + Delta-G solvation = -4107.843407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -43.23371 -41.45439 -40.44405 -38.20670 -36.83632 -35.96878 -35.41607 -34.44656 -32.55075 -30.80159 -30.32443 -30.01016 -27.77751 -27.18421 -25.66180 -24.18556 -23.49469 -23.05521 -22.41336 -21.37697 -20.92929 -19.75101 -19.09020 -18.45831 -17.92680 -17.75117 -17.10521 -16.71379 -16.66812 -16.53847 -16.12131 -15.83627 -15.65252 -15.25706 -15.15502 -15.02001 -14.75643 -14.68918 -14.54485 -14.13190 -13.80037 -13.53967 -13.41865 -13.27273 -12.93794 -12.85673 -12.85272 -12.59858 -12.39073 -12.27876 -11.92698 -11.78751 -11.69226 -11.34241 -11.04049 -10.99231 -10.90510 -10.65919 -10.28517 -9.31457 -9.23437 -9.07530 -8.68525 -5.49502 0.03051 0.55831 1.32054 1.33799 1.35258 1.47580 1.67179 1.80476 2.05032 2.54394 2.86187 2.93984 2.94225 3.15344 3.21845 3.33254 3.38878 3.59158 3.70472 3.72664 3.74399 4.07608 4.21647 4.22768 4.46433 4.47350 4.50688 4.53408 4.55627 4.62530 4.64494 4.69255 4.72833 4.76689 4.87687 5.00848 5.09150 5.11169 5.17798 5.22857 5.46373 5.59089 5.61087 5.91753 5.98125 6.06245 6.28487 6.66591 6.75265 6.88254 6.97659 7.29195 8.21662 8.87180 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.002446 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.677808 B =11444.807564 C =12290.328711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.151 0.849 4 C 0.508 3.492 5 O -0.563 6.563 6 N -0.706 5.706 7 C 0.121 3.879 8 C 0.110 3.890 9 O -0.533 6.533 10 C 0.127 3.873 11 N -0.655 5.655 12 C -0.290 4.290 13 H 0.045 0.955 14 C -0.091 4.091 15 N -0.971 5.971 16 Si 1.114 2.886 17 H -0.307 1.307 18 H -0.264 1.264 19 H -0.257 1.257 20 C 0.068 3.932 21 N -0.475 5.475 22 C 0.283 3.717 23 N -0.539 5.539 24 C 0.011 3.989 25 C -0.088 4.088 26 C -0.125 4.125 27 C -0.102 4.102 28 C -0.118 4.118 29 C 0.032 3.968 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.415 0.585 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.387 0.613 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.244 0.756 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.223 0.777 43 H 0.130 0.870 44 H 0.155 0.845 45 H 0.160 0.840 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -2.934 30.345 30.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 H 0.169 0.831 4 C 0.293 3.707 5 O -0.441 6.441 6 N -0.361 5.361 7 C -0.004 4.004 8 C 0.066 3.934 9 O -0.340 6.340 10 C 0.001 3.999 11 N -0.383 5.383 12 C -0.418 4.418 13 H 0.063 0.937 14 C -0.282 4.282 15 N -0.616 5.616 16 Si 0.939 3.061 17 H -0.235 1.235 18 H -0.191 1.191 19 H -0.182 1.182 20 C -0.057 4.057 21 N -0.165 5.165 22 C -0.003 4.003 23 N -0.259 5.259 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.145 4.145 27 C -0.122 4.122 28 C -0.139 4.139 29 C -0.076 4.076 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.254 0.746 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.237 0.763 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.240 0.760 43 H 0.148 0.852 44 H 0.173 0.827 45 H 0.178 0.822 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.226 -3.044 30.367 30.689 hybrid contribution -0.679 -0.696 -1.712 1.969 sum -3.905 -3.740 28.656 29.161 Atomic orbital electron populations 1.22239 0.88074 1.04923 1.06264 1.21513 0.98755 0.97988 0.80021 0.83107 1.20943 0.79957 0.84568 0.85217 1.90805 1.38695 1.27742 1.86849 1.45670 1.53546 1.32381 1.04469 1.21685 1.00185 0.96869 0.81663 1.22661 0.82213 0.94947 0.93537 1.86676 1.21207 1.83575 1.42545 1.22639 0.98708 0.88501 0.90085 1.45780 1.84008 1.06550 1.01954 1.19945 1.41635 0.96276 0.83894 0.93712 1.27269 0.99116 0.96647 1.05157 1.71033 1.51278 1.41524 0.97794 0.83236 0.77635 0.73757 0.71506 1.23549 1.19070 1.18188 1.23775 0.98628 0.98622 0.84673 1.45152 1.41452 1.11405 1.18471 1.25468 0.97760 0.84472 0.92574 1.70436 1.15338 1.27919 1.12190 1.19521 1.02755 0.90319 0.98051 1.20284 0.96666 0.98624 0.95215 1.21014 1.00559 0.91967 1.00949 1.21323 0.97408 1.00577 0.92846 1.20352 0.99988 0.93280 1.00274 1.19200 0.99271 0.97399 0.91723 0.86755 0.91033 0.89559 0.74618 0.89477 0.90045 0.76250 0.93264 0.90506 0.94659 0.91569 0.92475 0.76035 0.85244 0.82723 0.82221 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.14 71.98 0.66 -0.07 16 2 C 0.12 1.32 3.40 44.25 0.15 1.47 16 3 H 0.15 0.88 7.63 -2.39 -0.02 0.86 16 4 C 0.51 8.33 7.12 87.66 0.62 8.96 16 5 O -0.56 -14.80 15.48 -3.05 -0.05 -14.85 16 6 N -0.71 -9.40 5.23 -463.05 -2.42 -11.82 16 7 C 0.12 2.40 5.42 86.38 0.47 2.87 16 8 C 0.11 2.96 1.74 -10.38 -0.02 2.94 16 9 O -0.53 -13.80 13.56 -148.98 -2.02 -15.82 16 10 C 0.13 4.51 8.10 83.17 0.67 5.19 16 11 N -0.65 -30.58 3.69 -738.50 -2.73 -33.31 16 12 C -0.29 -16.91 11.08 84.03 0.93 -15.98 16 13 H 0.04 2.86 8.05 -2.91 -0.02 2.84 16 14 C -0.09 -5.42 5.50 84.86 0.47 -4.95 16 15 N -0.97 -62.90 13.70 21.65 0.30 -62.60 16 16 Si 1.11 51.07 25.13 68.60 1.72 52.80 16 17 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 18 H -0.26 -10.70 6.64 99.48 0.66 -10.04 16 19 H -0.26 -10.32 6.13 99.48 0.61 -9.71 16 20 C 0.07 2.39 5.14 83.26 0.43 2.82 16 21 N -0.47 -8.63 2.45 -501.73 -1.23 -9.86 16 22 C 0.28 6.09 10.71 180.05 1.93 8.02 16 23 N -0.54 -14.60 11.27 -192.03 -2.17 -16.77 16 24 C 0.01 0.27 7.23 39.45 0.29 0.55 16 25 C -0.09 -1.78 10.05 22.25 0.22 -1.56 16 26 C -0.12 -1.78 9.96 22.01 0.22 -1.56 16 27 C -0.10 -1.30 10.03 22.31 0.22 -1.08 16 28 C -0.12 -1.81 9.89 22.32 0.22 -1.58 16 29 C 0.03 0.67 6.87 38.86 0.27 0.94 16 30 H 0.11 -0.08 7.56 -2.39 -0.02 -0.10 16 31 H 0.07 0.42 7.95 -2.39 -0.02 0.40 16 32 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.42 2.84 6.37 -92.71 -0.59 2.25 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.77 7.89 -2.39 -0.02 1.75 16 36 H 0.39 5.29 7.21 -74.06 -0.53 4.76 16 37 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 39 H 0.24 15.99 8.73 -92.71 -0.81 15.18 16 40 H 0.07 2.21 7.50 -2.39 -0.02 2.19 16 41 H 0.06 2.01 4.67 -2.39 -0.01 2.00 16 42 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 45 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.15 1.39 7.76 -2.91 -0.02 1.37 16 Total: -1.00 -89.94 377.84 -1.12 -91.06 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -0.28 Total: 14.20 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 7.75 Total: 6.98 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -8.25 Total: -134.36 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -2.07 Total: -30.67 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 1.72 Total: 52.80 kcal Total: -89.94 -1.12 -91.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271373708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.714 kcal (2) G-P(sol) polarization free energy of solvation -89.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds