Wall clock time and date at job start Wed Apr 1 2020 04:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47076 * 2 1 4 4 C 1.46501 * 120.00079 * 93.29174 * 3 2 1 5 5 C 1.52998 * 109.47392 * 89.99550 * 4 3 2 6 6 C 1.53000 * 109.46975 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46777 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99616 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00531 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00057 * 180.02562 * 8 7 6 11 11 S 1.81001 * 109.47178 * 179.97438 * 10 8 7 12 12 C 1.76206 * 99.99700 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99709 * 359.97438 * 12 11 10 14 14 C 1.38798 * 119.99860 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99875 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00113 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46969 * 90.00158 * 16 14 12 18 18 H 1.48496 * 109.47118 * 210.00209 * 16 14 12 19 19 H 1.48500 * 109.47277 * 330.00799 * 16 14 12 20 20 C 1.34775 * 119.99919 * 273.28861 * 3 2 1 21 21 O 1.21280 * 119.99912 * 185.71995 * 20 3 2 22 22 C 1.50699 * 119.99916 * 5.71023 * 20 3 2 23 23 H 1.08994 * 110.44034 * 319.59225 * 22 20 3 24 24 C 1.54806 * 110.48805 * 196.90406 * 22 20 3 25 25 C 1.55001 * 102.09597 * 220.44521 * 24 22 20 26 26 O 1.44386 * 103.48665 * 37.02563 * 25 24 22 27 27 C 1.43751 * 106.97374 * 319.93833 * 26 25 24 28 28 H 1.09006 * 109.47205 * 173.91023 * 1 2 3 29 29 H 1.09004 * 109.47413 * 293.90804 * 1 2 3 30 30 H 1.08998 * 109.47236 * 53.91067 * 1 2 3 31 31 H 1.08998 * 109.47222 * 239.99662 * 2 1 3 32 32 H 1.09008 * 109.47040 * 120.00025 * 2 1 3 33 33 H 1.08998 * 109.46705 * 329.99450 * 4 3 2 34 34 H 1.09001 * 109.46834 * 210.00016 * 4 3 2 35 35 H 1.09002 * 109.46823 * 60.00053 * 5 4 3 36 36 H 1.08999 * 109.47167 * 300.00450 * 5 4 3 37 37 H 1.09002 * 109.47165 * 60.00430 * 6 5 4 38 38 H 1.09001 * 109.47179 * 300.00422 * 6 5 4 39 39 H 0.96997 * 120.00250 * 359.97438 * 7 6 5 40 40 H 1.08999 * 109.46708 * 299.99967 * 10 8 7 41 41 H 1.09002 * 109.47039 * 59.99422 * 10 8 7 42 42 H 0.97005 * 119.99566 * 180.02562 * 15 14 12 43 43 H 1.09003 * 110.91044 * 338.64285 * 24 22 20 44 44 H 1.09003 * 110.91043 * 102.24825 * 24 22 20 45 45 H 1.08995 * 110.61850 * 278.52382 * 25 24 22 46 46 H 1.08997 * 110.75489 * 155.58465 * 25 24 22 47 47 H 1.08997 * 109.87894 * 267.09157 * 27 26 25 48 48 H 1.09000 * 109.87502 * 145.94048 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3311 2.0476 1.2666 5 6 3.7977 1.7994 1.6249 6 6 4.1245 2.4959 2.9474 7 7 5.5291 2.2588 3.2900 8 6 6.0438 2.7797 4.4215 9 8 5.3444 3.4450 5.1558 10 6 7.4887 2.5363 4.7738 11 16 7.8753 3.3602 6.3384 12 6 9.5745 2.9236 6.5023 13 1 10.0512 2.3163 5.7471 14 6 10.2999 3.3592 7.6026 15 7 11.5691 3.0326 7.7253 16 14 9.4750 4.4090 8.9091 17 1 8.8912 3.5302 9.9542 18 1 10.4799 5.3116 9.5260 19 1 8.3980 5.2194 8.2858 20 6 2.1798 2.0388 -1.1653 21 8 2.6809 3.1432 -1.1739 22 6 1.7378 1.4018 -2.4575 23 1 1.9862 0.3406 -2.4632 24 6 2.3875 2.1197 -3.6655 25 6 1.2183 2.1678 -4.6819 26 8 0.0600 2.4010 -3.8520 27 6 0.2245 1.6027 -2.6679 28 1 -0.3634 -1.0219 -0.1090 29 1 -0.3634 0.4165 0.9395 30 1 -0.3633 0.6053 -0.8304 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6922 1.6487 2.0545 34 1 2.1579 3.1190 1.1660 35 1 4.4366 2.1984 0.8369 36 1 3.9709 0.7280 1.7255 37 1 3.4856 2.0974 3.7355 38 1 3.9514 3.5673 2.8463 39 1 6.0883 1.7264 2.7030 40 1 7.6627 1.4650 4.8741 41 1 8.1271 2.9358 3.9857 42 1 12.0760 3.3368 8.4944 43 1 2.7083 3.1254 -3.3938 44 1 3.2220 1.5398 -4.0598 45 1 1.1281 1.2178 -5.2086 46 1 1.3547 2.9859 -5.3891 47 1 -0.2626 0.6368 -2.8015 48 1 -0.2036 2.1204 -1.8095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001743807321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:26 Heat of formation + Delta-G solvation = -122.203028 kcal Electronic energy + Delta-G solvation = -27195.450951 eV Core-core repulsion = 23183.653296 eV Total energy + Delta-G solvation = -4011.797655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.16358 -39.35080 -39.00059 -36.85443 -35.38240 -33.23009 -32.43644 -32.21016 -30.68912 -29.96019 -29.09670 -26.03597 -25.55955 -24.13239 -23.75289 -22.64305 -21.77367 -20.45936 -19.20916 -18.14623 -17.85913 -17.31488 -16.87515 -16.38277 -16.33578 -15.78626 -15.65881 -15.39971 -15.22128 -14.93696 -14.63950 -14.40841 -14.22790 -13.84184 -13.57961 -13.32721 -13.23541 -12.91253 -12.81028 -12.72533 -12.57984 -12.47796 -12.08955 -11.95481 -11.88377 -11.83746 -11.67312 -11.34684 -11.26104 -11.14152 -11.00235 -10.60970 -10.47607 -10.04021 -9.85679 -9.57591 -9.21701 -9.01951 -8.96083 -8.49630 -6.91339 -6.28599 -4.00287 2.07410 2.35849 2.78810 2.98315 3.31488 3.33155 3.35675 3.51397 3.66967 3.74931 3.93514 4.20540 4.29064 4.33696 4.47441 4.53453 4.55543 4.61587 4.66334 4.68670 4.74998 4.77718 4.87731 5.00145 5.03817 5.07329 5.10506 5.16674 5.17223 5.21654 5.27448 5.29116 5.31857 5.51699 5.58976 5.63988 5.73986 5.81599 5.86385 6.01774 6.03089 6.26158 6.52172 6.82682 7.60666 7.66647 7.94474 8.41855 8.49372 9.17644 10.80597 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.001586 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.109899 B =17653.920117 C =18041.598220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.101 3.899 3 N -0.612 5.612 4 C 0.119 3.881 5 C -0.145 4.145 6 C 0.125 3.875 7 N -0.737 5.737 8 C 0.530 3.470 9 O -0.520 6.520 10 C -0.124 4.124 11 S -0.142 6.142 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.522 3.478 21 O -0.524 6.524 22 C -0.148 4.148 23 H 0.107 0.893 24 C -0.145 4.145 25 C 0.047 3.953 26 O -0.373 6.373 27 C 0.063 3.937 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.652 -10.383 -24.938 36.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 N -0.345 5.345 4 C -0.004 4.004 5 C -0.184 4.184 6 C 0.000 4.000 7 N -0.391 5.391 8 C 0.316 3.684 9 O -0.394 6.394 10 C -0.275 4.275 11 S 0.084 5.916 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C 0.310 3.690 21 O -0.400 6.400 22 C -0.170 4.170 23 H 0.125 0.875 24 C -0.183 4.183 25 C -0.030 4.030 26 O -0.292 6.292 27 C -0.014 4.014 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.081 0.919 46 H 0.116 0.884 47 H 0.089 0.911 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.572 -8.521 -23.645 35.856 hybrid contribution 1.266 -1.068 -0.334 1.689 sum -24.307 -9.589 -23.980 35.465 Atomic orbital electron populations 1.22479 0.95604 1.02936 1.03343 1.21656 0.94723 0.82106 1.03667 1.48007 1.65897 1.14411 1.06191 1.21393 0.95173 0.99329 0.84522 1.22130 0.97438 1.01305 0.97554 1.21148 0.82715 1.00714 0.95421 1.45934 1.12015 1.56160 1.25016 1.20284 0.89300 0.78616 0.80199 1.90701 1.61251 1.37928 1.49557 1.23280 0.94593 1.05414 1.04186 1.84790 1.14426 1.68887 1.23461 1.22323 0.93087 1.38983 1.12535 0.89394 1.24714 0.94247 0.95085 0.97264 1.69942 1.07398 1.44353 1.30002 0.86730 0.80796 0.81659 0.82643 1.19217 1.19927 1.15910 1.20297 0.78158 0.85698 0.84892 1.90732 1.42662 1.20129 1.86452 1.22798 0.97799 1.02117 0.94252 0.87493 1.23199 0.98515 1.03436 0.93143 1.23608 0.83836 1.01811 0.93701 1.88929 1.42540 1.67035 1.30690 1.23201 0.92755 0.96193 0.89256 0.91081 0.91850 0.91644 0.90326 0.89576 0.89896 0.89385 0.90638 0.91133 0.91505 0.91360 0.76700 0.88524 0.88451 0.91950 0.88144 0.89622 0.91907 0.88420 0.91070 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.51 10.16 37.15 0.38 -0.13 16 2 C 0.10 0.33 5.87 -4.05 -0.02 0.31 16 3 N -0.61 -3.88 2.48 -173.69 -0.43 -4.31 16 4 C 0.12 0.85 5.35 -4.04 -0.02 0.83 16 5 C -0.15 -1.14 5.65 -26.73 -0.15 -1.29 16 6 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16 7 N -0.74 -9.43 5.56 -60.29 -0.33 -9.77 16 8 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 9 O -0.52 -11.38 15.86 5.55 0.09 -11.29 16 10 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 11 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 12 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 13 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 15 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 16 Si 0.86 21.93 27.74 -169.99 -4.71 17.22 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.24 -6.03 6.74 56.52 0.38 -5.64 16 20 C 0.52 4.42 6.65 -10.99 -0.07 4.35 16 21 O -0.52 -6.67 15.14 5.56 0.08 -6.59 16 22 C -0.15 -0.84 2.66 -90.24 -0.24 -1.08 16 23 H 0.11 0.34 6.33 -51.93 -0.33 0.01 16 24 C -0.15 -0.89 6.62 -24.72 -0.16 -1.06 16 25 C 0.05 0.26 7.72 38.21 0.29 0.56 16 26 O -0.37 -3.10 11.52 -35.23 -0.41 -3.51 16 27 C 0.06 0.37 5.44 37.73 0.21 0.57 16 28 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.21 3.95 -51.93 -0.21 0.00 16 31 H 0.08 0.15 6.21 -51.93 -0.32 -0.17 16 32 H 0.09 0.23 8.05 -51.92 -0.42 -0.19 16 33 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 34 H 0.09 0.79 7.51 -51.93 -0.39 0.40 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 40 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 41 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.10 0.88 6.79 -51.93 -0.35 0.53 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.25 7.65 -51.93 -0.40 -0.14 16 48 H 0.09 0.56 6.66 -51.93 -0.35 0.22 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -37.58 398.70 -8.14 -45.72 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.75 Total: -1.46 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 0.53 Total: -0.49 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.01 Total: -39.98 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.23 Total: -21.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.58 -8.14 -45.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743807321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.479 kcal (2) G-P(sol) polarization free energy of solvation -37.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds