Wall clock time and date at job start Wed Apr 1 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34097 * 125.15887 * 2 1 4 4 C 1.38022 * 107.88691 * 179.97438 * 3 2 1 5 5 C 1.47246 * 126.81641 * 179.97438 * 4 3 2 6 6 O 1.21625 * 119.99972 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99959 * 0.02562 * 5 4 3 8 8 C 1.46497 * 119.99944 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47114 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.92180 * 57.44684 * 9 8 7 11 11 C 1.55155 * 111.00532 * 181.35298 * 9 8 7 12 12 C 1.54327 * 102.94571 * 153.57522 * 11 9 8 13 13 N 1.47024 * 107.26774 * 337.80617 * 12 11 9 14 14 C 1.36941 * 125.64618 * 179.20447 * 13 12 11 15 15 H 1.08005 * 119.99780 * 179.68989 * 14 13 12 16 16 C 1.38813 * 119.99913 * 359.69358 * 14 13 12 17 17 N 1.31616 * 119.99926 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99719 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47341 * 89.99896 * 18 16 14 20 20 H 1.48503 * 109.46756 * 209.99724 * 18 16 14 21 21 H 1.48496 * 109.46957 * 329.99498 * 18 16 14 22 22 C 1.47426 * 108.70449 * 358.94057 * 13 12 11 23 23 C 1.46598 * 106.36586 * 0.23981 * 4 3 2 24 24 C 1.48329 * 126.51053 * 179.73524 * 23 4 3 25 25 C 1.46731 * 127.11373 * 145.00227 * 24 23 4 26 26 C 1.34359 * 106.02512 * 179.97438 * 25 24 23 27 27 O 1.34166 * 108.99862 * 0.02562 * 26 25 24 28 28 C 1.34087 * 110.75367 * 359.72283 * 27 26 25 29 29 N 1.31353 * 106.97242 * 359.59600 * 23 4 3 30 30 H 1.09000 * 109.47104 * 90.00054 * 1 2 3 31 31 H 1.09003 * 109.46916 * 209.99314 * 1 2 3 32 32 H 1.08997 * 109.46621 * 329.99844 * 1 2 3 33 33 H 1.07999 * 126.05685 * 0.02562 * 3 2 1 34 34 H 0.97000 * 120.00160 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.46937 * 60.00106 * 8 7 5 36 36 H 1.09002 * 109.47231 * 300.00009 * 8 7 5 37 37 H 1.08999 * 110.71965 * 271.93488 * 11 9 8 38 38 H 1.09000 * 110.72417 * 35.03508 * 11 9 8 39 39 H 1.08995 * 109.88184 * 218.39040 * 12 11 9 40 40 H 1.09002 * 109.88385 * 97.22047 * 12 11 9 41 41 H 0.97001 * 119.99407 * 180.02562 * 17 16 14 42 42 H 1.09002 * 110.36518 * 142.96440 * 22 13 12 43 43 H 1.08995 * 110.36673 * 265.17549 * 22 13 12 44 44 H 1.08002 * 126.98986 * 0.03276 * 25 24 23 45 45 H 1.08001 * 125.50241 * 179.97438 * 26 25 24 46 46 H 1.07994 * 125.77115 * 180.28380 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2372 1.0963 0.0000 4 6 3.5552 0.6865 0.0006 5 6 4.7478 1.5502 0.0003 6 8 5.8581 1.0538 0.0004 7 7 4.6090 2.8908 -0.0002 8 6 5.7955 3.7500 0.0001 9 6 5.3625 5.2174 0.0002 10 1 4.7268 5.4356 0.8582 11 6 6.5939 6.1607 -0.0338 12 6 6.0345 7.4358 -0.6991 13 7 4.8421 7.0419 -1.4637 14 6 4.0441 7.8862 -2.1888 15 1 3.1897 7.4963 -2.7222 16 6 4.3335 9.2429 -2.2383 17 7 5.3744 9.7179 -1.5879 18 14 3.2445 10.3946 -3.2268 19 1 2.1553 10.9117 -2.3601 20 1 4.0562 11.5307 -3.7326 21 1 2.6566 9.6570 -4.3738 22 6 4.6514 5.5866 -1.3257 23 6 3.5321 -0.7793 -0.0049 24 6 4.7101 -1.6805 -0.0119 25 6 4.8330 -2.9823 0.6539 26 6 6.0682 -3.4286 0.3707 27 8 6.6944 -2.5235 -0.3966 28 6 5.8965 -1.4740 -0.6406 29 7 2.2699 -1.1428 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3632 0.8900 0.5139 33 1 1.8895 2.1188 0.0004 34 1 3.7235 3.2867 0.0001 35 1 6.3915 3.5467 -0.8896 36 1 6.3908 3.5472 0.8904 37 1 6.9439 6.3745 0.9761 38 1 7.3944 5.7285 -0.6343 39 1 6.7807 7.8620 -1.3696 40 1 5.7611 8.1633 0.0652 41 1 5.5763 10.6661 -1.6222 42 1 3.5897 5.3470 -1.2662 43 1 5.1114 5.0626 -2.1635 44 1 4.0826 -3.4809 1.2496 45 1 6.4894 -4.3645 0.7071 46 1 6.1542 -0.6096 -1.2345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028710708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:38 Heat of formation + Delta-G solvation = 83.723171 kcal Electronic energy + Delta-G solvation = -29194.355662 eV Core-core repulsion = 25088.336437 eV Total energy + Delta-G solvation = -4106.019225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39033 -41.25971 -39.22159 -37.57581 -34.72135 -34.18574 -32.62994 -32.19971 -30.87597 -29.77078 -29.62976 -28.24601 -26.98900 -25.52644 -23.96598 -22.87882 -22.29718 -21.36870 -20.38624 -19.96517 -19.88418 -19.37209 -18.16471 -17.28932 -16.78217 -16.08360 -16.04648 -15.86224 -15.76260 -15.20082 -15.06564 -14.65584 -14.33056 -14.11341 -13.78938 -13.44587 -13.34810 -13.22153 -12.94907 -12.82715 -12.67833 -12.35878 -12.28002 -11.98956 -11.73282 -11.38549 -11.16929 -10.92422 -10.81739 -10.46797 -10.38148 -10.16788 -10.02145 -9.88951 -9.73710 -9.67033 -9.41339 -9.05130 -8.78996 -8.62289 -8.35282 -6.85309 -5.73548 -3.07155 1.28675 1.39490 1.96096 2.04201 2.78405 3.05789 3.30660 3.37271 3.42298 3.44611 3.47008 4.05389 4.19761 4.46921 4.54088 4.74014 4.75058 4.97856 5.01006 5.02066 5.13387 5.21665 5.26426 5.29033 5.41466 5.43845 5.53115 5.69392 5.79387 5.89678 6.05783 6.07198 6.13679 6.14370 6.33778 6.34011 6.46497 6.47908 6.52268 6.53629 6.69193 6.90394 7.07396 7.32119 7.53686 7.62353 7.63602 7.80995 8.24103 8.34164 9.19844 9.80388 10.46535 11.38148 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.002309 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.794954 B =12125.293811 C =13531.624412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.365 5.365 3 C 0.106 3.894 4 C -0.285 4.285 5 C 0.594 3.406 6 O -0.547 6.547 7 N -0.722 5.722 8 C 0.135 3.865 9 C -0.118 4.118 10 H 0.079 0.921 11 C -0.135 4.135 12 C 0.177 3.823 13 N -0.607 5.607 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.143 3.857 23 C 0.207 3.793 24 C -0.143 4.143 25 C -0.188 4.188 26 C -0.050 4.050 27 O -0.181 6.181 28 C 0.053 3.947 29 N -0.288 5.288 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.187 0.813 34 H 0.397 0.603 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.149 0.851 45 H 0.202 0.798 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -22.916 5.993 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.144 5.144 3 C -0.043 4.043 4 C -0.301 4.301 5 C 0.382 3.618 6 O -0.427 6.427 7 N -0.372 5.372 8 C 0.012 3.988 9 C -0.138 4.138 10 H 0.097 0.903 11 C -0.174 4.174 12 C 0.052 3.948 13 N -0.333 5.333 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.017 3.983 23 C 0.039 3.961 24 C -0.146 4.146 25 C -0.208 4.208 26 C -0.116 4.116 27 O -0.076 6.076 28 C -0.017 4.017 29 N -0.109 5.109 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.204 0.796 34 H 0.231 0.769 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.037 0.963 44 H 0.167 0.833 45 H 0.219 0.781 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.912 -24.018 5.841 25.415 hybrid contribution -0.969 1.745 -0.317 2.021 sum -6.881 -22.273 5.523 23.957 Atomic orbital electron populations 1.22017 0.73455 1.05009 1.04013 1.48124 1.07205 1.03364 1.55660 1.23025 0.90550 0.93672 0.97092 1.21294 0.92587 0.92875 1.23313 1.17094 0.87495 0.81456 0.75738 1.90697 1.26244 1.74251 1.51478 1.45896 1.10481 1.05484 1.75333 1.21384 0.86810 0.88520 1.02113 1.22614 0.99106 0.92089 0.99964 0.90294 1.22856 0.96118 0.97827 1.00562 1.21148 0.88482 0.90864 0.94260 1.44486 1.29828 1.01135 1.57847 1.19038 1.05773 0.88221 1.22718 0.90535 1.24810 0.98288 0.96875 1.00525 1.69966 1.28153 1.12843 1.45906 0.86126 0.79471 0.80686 0.79509 1.21637 1.21656 1.20734 1.21556 0.96740 0.86902 0.93148 1.20795 0.90066 0.89791 0.95436 1.18838 0.92947 0.95698 1.07119 1.22729 0.98031 0.95273 1.04723 1.23803 0.93174 0.95668 0.98952 1.83944 1.41875 1.26175 1.55625 1.24599 0.87939 0.89629 0.99556 1.77388 1.01315 1.06382 1.25781 0.90146 0.88935 0.88872 0.79618 0.76855 0.91241 0.91591 0.91995 0.92156 0.93931 0.93560 0.93737 0.94850 0.96273 0.83280 0.78120 0.76565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.39 59.85 0.68 1.14 16 2 N -0.36 -3.48 3.95 -67.64 -0.27 -3.74 16 3 C 0.11 0.98 10.94 -16.64 -0.18 0.80 16 4 C -0.29 -3.56 6.31 -102.95 -0.65 -4.21 16 5 C 0.59 8.16 7.81 -12.60 -0.10 8.06 16 6 O -0.55 -8.83 13.04 5.26 0.07 -8.76 16 7 N -0.72 -8.87 5.40 -61.44 -0.33 -9.20 16 8 C 0.14 1.87 5.12 -4.05 -0.02 1.85 16 9 C -0.12 -1.87 3.10 -88.47 -0.27 -2.14 16 10 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 11 C -0.13 -2.39 6.42 -24.90 -0.16 -2.55 16 12 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16 13 N -0.61 -15.03 3.39 -170.07 -0.58 -15.60 16 14 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 15 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.77 10.31 55.49 0.57 -26.20 16 18 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.14 2.74 6.41 -2.53 -0.02 2.73 16 23 C 0.21 2.82 7.34 -80.55 -0.59 2.23 16 24 C -0.14 -1.92 6.07 -103.17 -0.63 -2.54 16 25 C -0.19 -2.11 11.15 -37.52 -0.42 -2.53 16 26 C -0.05 -0.48 12.04 29.36 0.35 -0.13 16 27 O -0.18 -2.18 10.55 6.66 0.07 -2.11 16 28 C 0.05 0.70 10.28 29.87 0.31 1.00 16 29 N -0.29 -3.68 12.50 34.58 0.43 -3.25 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.22 8.13 -51.93 -0.42 -0.20 16 33 H 0.19 1.01 7.48 -52.49 -0.39 0.62 16 34 H 0.40 4.05 7.29 -40.82 -0.30 3.75 16 35 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 40 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.02 0.38 8.01 -51.93 -0.42 -0.03 16 44 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.22 2.80 6.37 -52.49 -0.33 2.47 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -35.46 384.96 -7.62 -43.08 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.40 Total: 2.13 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.96 Total: 1.15 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.17 Total: -58.00 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.14 Total: -10.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.46 -7.62 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028710708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.799 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds