Wall clock time and date at job start Wed Apr 1 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34097 * 125.15887 * 2 1 4 4 C 1.38022 * 107.88691 * 179.97438 * 3 2 1 5 5 C 1.47246 * 126.81641 * 179.97438 * 4 3 2 6 6 O 1.21625 * 119.99972 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99959 * 0.02562 * 5 4 3 8 8 C 1.46497 * 119.99944 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47114 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.92180 * 57.44684 * 9 8 7 11 11 C 1.55155 * 111.00532 * 181.35298 * 9 8 7 12 12 C 1.54327 * 102.94571 * 153.57522 * 11 9 8 13 13 N 1.47024 * 107.26774 * 337.80617 * 12 11 9 14 14 C 1.36941 * 125.64618 * 179.20447 * 13 12 11 15 15 H 1.08005 * 119.99780 * 179.68989 * 14 13 12 16 16 C 1.38813 * 119.99913 * 359.69358 * 14 13 12 17 17 N 1.31616 * 119.99926 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99719 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47341 * 89.99896 * 18 16 14 20 20 H 1.48503 * 109.46756 * 209.99724 * 18 16 14 21 21 H 1.48496 * 109.46957 * 329.99498 * 18 16 14 22 22 C 1.47426 * 108.70449 * 358.94057 * 13 12 11 23 23 C 1.46598 * 106.36586 * 0.23981 * 4 3 2 24 24 C 1.48329 * 126.51053 * 179.73524 * 23 4 3 25 25 C 1.46731 * 127.11373 * 145.00227 * 24 23 4 26 26 C 1.34359 * 106.02512 * 179.97438 * 25 24 23 27 27 O 1.34166 * 108.99862 * 0.02562 * 26 25 24 28 28 C 1.34087 * 110.75367 * 359.72283 * 27 26 25 29 29 N 1.31353 * 106.97242 * 359.59600 * 23 4 3 30 30 H 1.09000 * 109.47104 * 90.00054 * 1 2 3 31 31 H 1.09003 * 109.46916 * 209.99314 * 1 2 3 32 32 H 1.08997 * 109.46621 * 329.99844 * 1 2 3 33 33 H 1.07999 * 126.05685 * 0.02562 * 3 2 1 34 34 H 0.97000 * 120.00160 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.46937 * 60.00106 * 8 7 5 36 36 H 1.09002 * 109.47231 * 300.00009 * 8 7 5 37 37 H 1.08999 * 110.71965 * 271.93488 * 11 9 8 38 38 H 1.09000 * 110.72417 * 35.03508 * 11 9 8 39 39 H 1.08995 * 109.88184 * 218.39040 * 12 11 9 40 40 H 1.09002 * 109.88385 * 97.22047 * 12 11 9 41 41 H 0.97001 * 119.99407 * 180.02562 * 17 16 14 42 42 H 1.09002 * 110.36518 * 142.96440 * 22 13 12 43 43 H 1.08995 * 110.36673 * 265.17549 * 22 13 12 44 44 H 1.08002 * 126.98986 * 0.03276 * 25 24 23 45 45 H 1.08001 * 125.50241 * 179.97438 * 26 25 24 46 46 H 1.07994 * 125.77115 * 180.28380 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2372 1.0963 0.0000 4 6 3.5552 0.6865 0.0006 5 6 4.7478 1.5502 0.0003 6 8 5.8581 1.0538 0.0004 7 7 4.6090 2.8908 -0.0002 8 6 5.7955 3.7500 0.0001 9 6 5.3625 5.2174 0.0002 10 1 4.7268 5.4356 0.8582 11 6 6.5939 6.1607 -0.0338 12 6 6.0345 7.4358 -0.6991 13 7 4.8421 7.0419 -1.4637 14 6 4.0441 7.8862 -2.1888 15 1 3.1897 7.4963 -2.7222 16 6 4.3335 9.2429 -2.2383 17 7 5.3744 9.7179 -1.5879 18 14 3.2445 10.3946 -3.2268 19 1 2.1553 10.9117 -2.3601 20 1 4.0562 11.5307 -3.7326 21 1 2.6566 9.6570 -4.3738 22 6 4.6514 5.5866 -1.3257 23 6 3.5321 -0.7793 -0.0049 24 6 4.7101 -1.6805 -0.0119 25 6 4.8330 -2.9823 0.6539 26 6 6.0682 -3.4286 0.3707 27 8 6.6944 -2.5235 -0.3966 28 6 5.8965 -1.4740 -0.6406 29 7 2.2699 -1.1428 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3632 0.8900 0.5139 33 1 1.8895 2.1188 0.0004 34 1 3.7235 3.2867 0.0001 35 1 6.3915 3.5467 -0.8896 36 1 6.3908 3.5472 0.8904 37 1 6.9439 6.3745 0.9761 38 1 7.3944 5.7285 -0.6343 39 1 6.7807 7.8620 -1.3696 40 1 5.7611 8.1633 0.0652 41 1 5.5763 10.6661 -1.6222 42 1 3.5897 5.3470 -1.2662 43 1 5.1114 5.0626 -2.1635 44 1 4.0826 -3.4809 1.2496 45 1 6.4894 -4.3645 0.7071 46 1 6.1542 -0.6096 -1.2345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028710708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:36 Heat of formation + Delta-G solvation = 59.579303 kcal Electronic energy + Delta-G solvation = -29195.402619 eV Core-core repulsion = 25088.336437 eV Total energy + Delta-G solvation = -4107.066181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.25402 -42.06900 -40.31946 -39.09341 -35.99703 -35.02728 -34.29439 -33.02650 -32.04057 -31.16905 -30.57701 -29.71249 -27.77771 -27.11654 -25.40714 -23.96290 -23.08747 -22.30038 -21.87955 -21.30415 -20.96874 -20.34765 -19.09890 -18.74985 -18.06263 -17.12135 -16.94170 -16.86511 -16.63124 -16.53551 -16.24961 -15.96082 -15.62223 -15.38227 -14.92534 -14.55276 -14.47585 -13.95243 -13.92575 -13.79030 -13.70893 -13.63000 -13.37608 -13.35418 -13.03385 -12.94634 -12.74301 -12.59023 -12.02040 -12.00419 -11.85289 -11.80644 -11.48843 -11.41217 -11.26171 -10.85453 -10.67714 -10.25318 -10.05362 -9.67097 -9.21581 -8.86187 -7.82260 -5.17371 0.45284 0.52816 1.14504 1.40458 1.47549 1.49383 1.57859 1.86878 2.23152 2.29424 2.51050 2.52071 3.31437 3.36338 3.49803 3.66083 3.86222 3.94670 4.06849 4.08725 4.10225 4.16204 4.28134 4.41142 4.45412 4.51438 4.58585 4.62686 4.67811 4.72997 4.79262 4.88785 4.96565 4.99206 5.11518 5.13913 5.23199 5.30868 5.43799 5.49234 5.51202 5.56149 5.71729 5.81797 5.87679 6.21251 6.23267 6.47626 6.70031 7.13315 7.35616 7.81785 8.46202 9.28373 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.002309 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.794954 B =12125.293811 C =13531.624412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.360 5.360 3 C 0.128 3.872 4 C -0.316 4.316 5 C 0.594 3.406 6 O -0.578 6.578 7 N -0.712 5.712 8 C 0.148 3.852 9 C -0.094 4.094 10 H 0.091 0.909 11 C -0.124 4.124 12 C 0.183 3.817 13 N -0.629 5.629 14 C -0.238 4.238 15 H 0.086 0.914 16 C -0.070 4.070 17 N -0.953 5.953 18 Si 0.977 3.023 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.268 1.268 22 C 0.139 3.861 23 C 0.185 3.815 24 C -0.161 4.161 25 C -0.209 4.209 26 C -0.034 4.034 27 O -0.191 6.191 28 C 0.035 3.965 29 N -0.313 5.313 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.229 0.771 34 H 0.410 0.590 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.001 0.999 40 H 0.012 0.988 41 H 0.245 0.755 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.161 0.839 45 H 0.245 0.755 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 -24.240 6.579 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.138 5.138 3 C -0.023 4.023 4 C -0.332 4.332 5 C 0.384 3.616 6 O -0.459 6.459 7 N -0.363 5.363 8 C 0.024 3.976 9 C -0.114 4.114 10 H 0.109 0.891 11 C -0.162 4.162 12 C 0.058 3.942 13 N -0.355 5.355 14 C -0.367 4.367 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.806 3.194 19 H -0.211 1.211 20 H -0.225 1.225 21 H -0.193 1.193 22 C 0.014 3.986 23 C 0.018 3.982 24 C -0.164 4.164 25 C -0.229 4.229 26 C -0.100 4.100 27 O -0.087 6.087 28 C -0.035 4.035 29 N -0.134 5.134 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.245 0.755 34 H 0.246 0.754 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.031 0.969 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.179 0.821 45 H 0.261 0.739 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.051 -25.388 6.424 27.398 hybrid contribution -0.411 2.084 -0.508 2.185 sum -8.462 -23.304 5.916 25.488 Atomic orbital electron populations 1.22452 0.70712 1.06829 1.05430 1.48542 1.08657 1.02655 1.53915 1.23590 0.89304 0.95160 0.94253 1.21253 0.93468 0.92338 1.26105 1.17280 0.87554 0.81707 0.75098 1.90684 1.27534 1.74811 1.52920 1.45701 1.10628 1.04930 1.75077 1.21124 0.87271 0.87122 1.02050 1.22412 0.97678 0.92838 0.98473 0.89088 1.22719 0.96981 0.95292 1.01254 1.20908 0.87573 0.93010 0.92729 1.44821 1.29765 1.03391 1.57567 1.19482 1.06006 0.88885 1.22366 0.89656 1.25666 0.99851 0.98641 1.02151 1.70198 1.29955 1.12488 1.47614 0.85088 0.77617 0.78295 0.78401 1.21112 1.22549 1.19319 1.21754 0.98383 0.83768 0.94729 1.21002 0.90421 0.90602 0.96196 1.19209 0.93205 0.96711 1.07284 1.22970 0.99220 0.94967 1.05693 1.24640 0.92554 0.95967 0.96826 1.83935 1.42164 1.26397 1.56160 1.24471 0.88360 0.90130 1.00568 1.77309 1.01379 1.08249 1.26462 0.88880 0.88635 0.85631 0.75470 0.75394 0.92177 0.90942 0.89777 0.91182 0.98044 0.96937 0.94557 0.92848 0.96490 0.82133 0.73864 0.77360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.39 127.77 1.46 1.99 16 2 N -0.36 -5.97 3.95 -367.92 -1.45 -7.42 16 3 C 0.13 2.00 10.94 84.30 0.92 2.92 16 4 C -0.32 -7.52 6.31 -18.78 -0.12 -7.64 16 5 C 0.59 15.72 7.81 86.61 0.68 16.40 16 6 O -0.58 -18.73 13.04 -4.11 -0.05 -18.78 16 7 N -0.71 -15.86 5.40 -466.56 -2.52 -18.38 16 8 C 0.15 3.77 5.12 86.38 0.44 4.22 16 9 C -0.09 -2.77 3.10 -9.40 -0.03 -2.80 16 10 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 11 C -0.12 -4.25 6.42 31.78 0.20 -4.04 16 12 C 0.18 8.85 5.37 86.73 0.47 9.32 16 13 N -0.63 -31.10 3.39 -691.97 -2.35 -33.44 16 14 C -0.24 -12.96 10.28 84.03 0.86 -12.10 16 15 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 16 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 17 N -0.95 -57.15 10.31 21.65 0.22 -56.93 16 18 Si 0.98 44.97 29.55 68.60 2.03 46.99 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.14 5.07 6.41 86.86 0.56 5.62 16 23 C 0.19 5.02 7.34 44.09 0.32 5.35 16 24 C -0.16 -4.40 6.07 -18.93 -0.11 -4.52 16 25 C -0.21 -4.61 11.15 23.60 0.26 -4.35 16 26 C -0.03 -0.63 12.04 66.93 0.81 0.18 16 27 O -0.19 -4.61 10.55 0.90 0.01 -4.60 16 28 C 0.04 0.95 10.28 67.26 0.69 1.64 16 29 N -0.31 -7.72 12.50 -44.50 -0.56 -8.28 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.13 0.02 8.13 -2.39 -0.02 0.00 16 33 H 0.23 1.37 7.48 -2.91 -0.02 1.35 16 34 H 0.41 6.94 7.29 -92.71 -0.68 6.26 16 35 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 39 H 0.00 0.07 7.51 -2.39 -0.02 0.05 16 40 H 0.01 0.67 7.38 -2.39 -0.02 0.66 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.02 0.65 8.01 -2.39 -0.02 0.63 16 44 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.25 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.21 5.79 6.37 -2.91 -0.02 5.77 16 Total: -1.00 -80.96 384.96 3.54 -77.42 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.33 Total: 14.72 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 7.87 Total: 8.70 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -6.65 Total: -124.45 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.04 Total: -23.38 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -80.96 3.54 -77.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028710708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.997 kcal (2) G-P(sol) polarization free energy of solvation -80.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds