Wall clock time and date at job start Wed Apr 1 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 O 1.42894 * 109.47424 * 120.00298 * 2 1 3 5 5 C 1.42903 * 114.00096 * 149.99618 * 4 2 1 6 6 C 1.52994 * 109.47243 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47282 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99739 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99874 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84882 * 23.80125 * 10 9 7 12 12 C 1.53786 * 113.61381 * 154.99775 * 10 9 7 13 13 C 1.53782 * 87.07674 * 89.20200 * 12 10 9 14 14 H 1.08998 * 113.61343 * 270.80004 * 13 12 10 15 15 N 1.46504 * 113.61009 * 139.98306 * 13 12 10 16 16 C 1.34775 * 119.99561 * 156.52911 * 15 13 12 17 17 O 1.21282 * 120.00577 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99768 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00439 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99949 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00229 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99759 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47399 * 299.99573 * 24 22 20 27 27 H 1.48498 * 109.47295 * 60.00179 * 24 22 20 28 28 C 1.53778 * 87.17489 * 25.39278 * 13 12 10 29 29 H 1.09000 * 109.46594 * 299.99958 * 1 2 3 30 30 H 1.09000 * 109.47482 * 59.99420 * 1 2 3 31 31 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46937 * 240.00434 * 2 1 3 33 33 H 1.09003 * 109.46826 * 60.00366 * 3 2 1 34 34 H 1.09004 * 109.47345 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47382 * 300.00642 * 3 2 1 36 36 H 1.08997 * 109.47157 * 60.00260 * 5 4 2 37 37 H 1.09002 * 109.47225 * 300.00147 * 5 4 2 38 38 H 1.08997 * 109.47517 * 60.00248 * 6 5 4 39 39 H 1.09000 * 109.47280 * 299.99739 * 6 5 4 40 40 H 0.96999 * 120.00030 * 359.97438 * 9 7 6 41 41 H 1.08991 * 113.61363 * 334.65523 * 12 10 9 42 42 H 1.09000 * 113.61073 * 203.75088 * 12 10 9 43 43 H 0.96993 * 120.00065 * 336.52653 * 15 13 12 44 44 H 1.09000 * 109.47235 * 59.99532 * 18 16 15 45 45 H 1.09005 * 109.46867 * 299.99572 * 18 16 15 46 46 H 0.97000 * 120.00071 * 359.97438 * 23 22 20 47 47 H 1.08997 * 113.61614 * 89.15808 * 28 13 12 48 48 H 1.09000 * 113.61109 * 220.06448 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9884 6 6 3.6756 -2.0092 2.2939 7 6 5.0043 -2.6951 2.1061 8 8 5.5678 -2.6420 1.0335 9 7 5.5657 -3.3685 3.1298 10 6 6.8570 -4.0357 2.9470 11 1 7.4469 -3.6022 2.1393 12 6 7.6452 -4.2211 4.2545 13 6 6.9150 -5.5653 4.4118 14 1 5.9701 -5.4886 4.9497 15 7 7.7707 -6.6424 4.9158 16 6 7.2217 -7.7019 5.5423 17 8 6.0194 -7.7635 5.6892 18 6 8.1020 -8.8096 6.0612 19 16 7.0764 -10.0776 6.8463 20 6 8.3256 -11.2153 7.3460 21 1 9.3635 -11.0054 7.1336 22 6 7.9757 -12.3820 8.0117 23 7 6.7107 -12.6382 8.2701 24 14 9.3001 -13.5878 8.5420 25 1 8.6704 -14.7446 9.2279 26 1 10.0421 -14.0652 7.3475 27 1 10.2407 -12.9125 9.4718 28 6 6.7546 -5.5705 2.8824 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 4.0200 -0.5875 0.7123 37 1 3.1809 -2.0707 0.1984 38 1 2.9216 -2.7464 2.5696 39 1 3.7607 -1.2634 3.0842 40 1 5.1147 -3.4113 3.9875 41 1 7.3905 -3.4932 5.0247 42 1 8.7201 -4.3228 4.1056 43 1 8.7323 -6.5930 4.7985 44 1 8.8021 -8.4051 6.7922 45 1 8.6562 -9.2515 5.2330 46 1 6.0231 -12.0115 7.9957 47 1 7.5856 -6.0419 2.3578 48 1 5.7820 -5.9303 2.5467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284040742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:36 Heat of formation + Delta-G solvation = -120.666030 kcal Electronic energy + Delta-G solvation = -26331.608919 eV Core-core repulsion = 22319.877914 eV Total energy + Delta-G solvation = -4011.731005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80231 -39.59632 -38.74029 -38.00733 -34.30333 -33.79244 -32.67160 -32.54743 -31.06172 -29.27908 -27.70258 -26.09646 -25.27606 -24.79886 -23.60003 -21.79529 -21.04900 -20.49295 -19.93073 -18.34539 -17.94763 -16.98994 -16.62539 -16.51297 -16.43284 -16.15649 -15.37847 -15.21344 -15.06731 -14.58855 -14.44556 -14.09704 -13.86571 -13.75503 -13.46129 -13.26983 -12.98763 -12.90345 -12.87103 -12.68977 -12.50107 -12.38858 -12.27319 -12.07880 -11.88646 -11.80957 -11.61292 -11.14519 -11.12243 -10.93560 -10.87967 -10.29668 -10.18922 -9.99599 -9.61657 -9.55915 -9.45171 -9.04978 -8.96747 -8.25309 -6.69885 -6.64313 -4.02508 2.20410 2.51348 2.88628 2.90801 3.33490 3.36433 3.36481 3.53548 3.58427 4.06296 4.21361 4.23389 4.28951 4.41417 4.52071 4.59019 4.64282 4.67893 4.71365 4.77453 4.97218 5.03347 5.12591 5.18451 5.20445 5.24116 5.31699 5.32787 5.36378 5.38307 5.39219 5.44243 5.46803 5.56868 5.71005 5.72192 5.74352 5.75343 5.80123 5.97855 6.16681 6.52080 6.79243 7.05255 7.56662 7.79024 7.89415 8.45397 8.47838 9.24801 10.79579 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.001410 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.897195 B =19853.101515 C =20585.566650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.141 4.141 7 C 0.523 3.477 8 O -0.541 6.541 9 N -0.712 5.712 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.152 4.152 13 C 0.126 3.874 14 H 0.113 0.887 15 N -0.727 5.727 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.132 4.132 19 S -0.116 6.116 20 C -0.609 4.609 21 H 0.066 0.934 22 C 0.036 3.964 23 N -0.883 5.883 24 Si 1.084 2.916 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.164 4.164 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.405 0.595 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.400 0.600 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.278 0.722 47 H 0.095 0.905 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 28.087 -15.082 32.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.234 4.234 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.181 4.181 7 C 0.309 3.691 8 O -0.417 6.417 9 N -0.363 5.363 10 C 0.016 3.984 11 H 0.127 0.873 12 C -0.191 4.191 13 C 0.020 3.980 14 H 0.131 0.869 15 N -0.380 5.380 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.283 4.283 19 S 0.110 5.890 20 C -0.757 4.757 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.910 3.090 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.204 4.204 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.240 0.760 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.234 0.766 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.291 26.569 -14.664 30.804 hybrid contribution 1.812 1.468 -0.772 2.457 sum -3.479 28.036 -15.436 32.193 Atomic orbital electron populations 1.21873 0.93477 1.02843 1.02570 1.22079 0.95008 0.92409 0.88046 1.22310 1.01649 0.96759 1.02637 1.87853 1.36580 1.70139 1.36013 1.22128 0.85567 0.95974 0.96222 1.21484 0.94978 1.01510 1.00131 1.20429 0.86692 0.78091 0.83854 1.90722 1.64115 1.61114 1.25795 1.45682 1.22027 1.53605 1.14996 1.21714 0.84723 0.93065 0.98857 0.87320 1.23740 1.00783 0.97251 0.97314 1.22498 0.95601 0.85844 0.94024 0.86925 1.45947 1.10274 1.21287 1.60505 1.20340 0.88980 0.82293 0.76593 1.90695 1.15050 1.77753 1.55711 1.23332 1.02554 0.98643 1.03816 1.84817 1.12663 1.18421 1.73063 1.23705 0.94425 1.09698 1.47834 0.91617 1.26053 1.00713 0.97184 0.93510 1.70801 1.00310 1.38306 1.42333 0.83334 0.73699 0.75487 0.76513 1.20253 1.21132 1.21123 1.23993 1.03777 0.95497 0.97155 0.91729 0.91212 0.91893 0.92083 0.91727 0.92423 0.91602 0.92493 0.92391 0.87673 0.87840 0.76027 0.90041 0.88081 0.76571 0.88924 0.88931 0.91002 0.88661 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.56 37.16 0.36 -0.46 16 2 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 3 C -0.18 -0.99 9.53 37.16 0.35 -0.63 16 4 O -0.39 -3.25 9.99 -35.23 -0.35 -3.61 16 5 C 0.08 0.62 5.04 37.15 0.19 0.81 16 6 C -0.14 -0.94 6.07 -27.88 -0.17 -1.11 16 7 C 0.52 4.65 7.83 -10.98 -0.09 4.57 16 8 O -0.54 -6.78 15.58 5.56 0.09 -6.70 16 9 N -0.71 -5.24 5.26 -52.93 -0.28 -5.52 16 10 C 0.12 0.98 4.33 -67.03 -0.29 0.69 16 11 H 0.11 0.96 7.46 -51.93 -0.39 0.57 16 12 C -0.15 -1.04 7.58 -25.92 -0.20 -1.23 16 13 C 0.13 1.28 4.09 -67.12 -0.27 1.01 16 14 H 0.11 1.32 7.50 -51.93 -0.39 0.93 16 15 N -0.73 -8.79 5.36 -53.02 -0.28 -9.08 16 16 C 0.53 9.44 7.85 -10.98 -0.09 9.36 16 17 O -0.52 -11.26 15.48 5.56 0.09 -11.17 16 18 C -0.13 -2.60 6.16 36.01 0.22 -2.38 16 19 S -0.12 -3.09 19.60 -107.50 -2.11 -5.20 16 20 C -0.61 -17.44 9.50 30.94 0.29 -17.14 16 21 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 22 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 23 N -0.88 -27.38 13.67 55.49 0.76 -26.62 16 24 Si 1.08 24.76 29.92 -169.99 -5.09 19.67 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.16 -1.58 7.69 -25.83 -0.20 -1.77 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 7.79 -51.93 -0.40 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.34 7.87 -51.93 -0.41 -0.07 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.47 7.83 -51.93 -0.41 0.06 16 37 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 2.17 8.70 -40.82 -0.36 1.82 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.56 8.11 -51.93 -0.42 0.14 16 43 H 0.40 3.65 8.71 -40.82 -0.36 3.29 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 46 H 0.28 8.79 7.13 -40.82 -0.29 8.50 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 414.88 15.07 6.25 6.25 Total: -1.00 -37.19 414.88 -9.11 -46.30 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.12 Total: 2.58 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.07 Total: -6.91 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.20 Total: -41.22 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.18 Total: -21.48 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.67 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.19 -9.11 -46.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284040742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.364 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds