Wall clock time and date at job start Wed Apr 1 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 O 1.42894 * 109.47424 * 120.00298 * 2 1 3 5 5 C 1.42903 * 114.00096 * 149.99618 * 4 2 1 6 6 C 1.52994 * 109.47243 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47282 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99739 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99874 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84882 * 23.80125 * 10 9 7 12 12 C 1.53786 * 113.61381 * 154.99775 * 10 9 7 13 13 C 1.53782 * 87.07674 * 89.20200 * 12 10 9 14 14 H 1.08998 * 113.61343 * 270.80004 * 13 12 10 15 15 N 1.46504 * 113.61009 * 139.98306 * 13 12 10 16 16 C 1.34775 * 119.99561 * 156.52911 * 15 13 12 17 17 O 1.21282 * 120.00577 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99768 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00439 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99949 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00229 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99759 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47399 * 299.99573 * 24 22 20 27 27 H 1.48498 * 109.47295 * 60.00179 * 24 22 20 28 28 C 1.53778 * 87.17489 * 25.39278 * 13 12 10 29 29 H 1.09000 * 109.46594 * 299.99958 * 1 2 3 30 30 H 1.09000 * 109.47482 * 59.99420 * 1 2 3 31 31 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46937 * 240.00434 * 2 1 3 33 33 H 1.09003 * 109.46826 * 60.00366 * 3 2 1 34 34 H 1.09004 * 109.47345 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47382 * 300.00642 * 3 2 1 36 36 H 1.08997 * 109.47157 * 60.00260 * 5 4 2 37 37 H 1.09002 * 109.47225 * 300.00147 * 5 4 2 38 38 H 1.08997 * 109.47517 * 60.00248 * 6 5 4 39 39 H 1.09000 * 109.47280 * 299.99739 * 6 5 4 40 40 H 0.96999 * 120.00030 * 359.97438 * 9 7 6 41 41 H 1.08991 * 113.61363 * 334.65523 * 12 10 9 42 42 H 1.09000 * 113.61073 * 203.75088 * 12 10 9 43 43 H 0.96993 * 120.00065 * 336.52653 * 15 13 12 44 44 H 1.09000 * 109.47235 * 59.99532 * 18 16 15 45 45 H 1.09005 * 109.46867 * 299.99572 * 18 16 15 46 46 H 0.97000 * 120.00071 * 359.97438 * 23 22 20 47 47 H 1.08997 * 113.61614 * 89.15808 * 28 13 12 48 48 H 1.09000 * 113.61109 * 220.06448 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9884 6 6 3.6756 -2.0092 2.2939 7 6 5.0043 -2.6951 2.1061 8 8 5.5678 -2.6420 1.0335 9 7 5.5657 -3.3685 3.1298 10 6 6.8570 -4.0357 2.9470 11 1 7.4469 -3.6022 2.1393 12 6 7.6452 -4.2211 4.2545 13 6 6.9150 -5.5653 4.4118 14 1 5.9701 -5.4886 4.9497 15 7 7.7707 -6.6424 4.9158 16 6 7.2217 -7.7019 5.5423 17 8 6.0194 -7.7635 5.6892 18 6 8.1020 -8.8096 6.0612 19 16 7.0764 -10.0776 6.8463 20 6 8.3256 -11.2153 7.3460 21 1 9.3635 -11.0054 7.1336 22 6 7.9757 -12.3820 8.0117 23 7 6.7107 -12.6382 8.2701 24 14 9.3001 -13.5878 8.5420 25 1 8.6704 -14.7446 9.2279 26 1 10.0421 -14.0652 7.3475 27 1 10.2407 -12.9125 9.4718 28 6 6.7546 -5.5705 2.8824 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 4.0200 -0.5875 0.7123 37 1 3.1809 -2.0707 0.1984 38 1 2.9216 -2.7464 2.5696 39 1 3.7607 -1.2634 3.0842 40 1 5.1147 -3.4113 3.9875 41 1 7.3905 -3.4932 5.0247 42 1 8.7201 -4.3228 4.1056 43 1 8.7323 -6.5930 4.7985 44 1 8.8021 -8.4051 6.7922 45 1 8.6562 -9.2515 5.2330 46 1 6.0231 -12.0115 7.9957 47 1 7.5856 -6.0419 2.3578 48 1 5.7820 -5.9303 2.5467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284040742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:35 Heat of formation + Delta-G solvation = -148.152330 kcal Electronic energy + Delta-G solvation = -26332.800814 eV Core-core repulsion = 22319.877914 eV Total energy + Delta-G solvation = -4012.922901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61563 -40.62887 -39.48177 -38.92893 -35.29708 -34.74472 -34.36395 -33.61214 -31.71223 -30.71054 -28.13918 -27.11878 -26.78819 -25.93648 -24.36927 -22.30832 -22.00047 -21.52947 -20.77089 -20.33655 -18.61769 -18.00692 -17.83205 -17.26101 -17.08483 -17.00139 -16.53988 -16.39670 -15.95845 -15.77115 -15.68187 -15.30442 -14.97486 -14.66208 -14.50001 -14.43889 -14.04671 -13.99793 -13.80249 -13.52308 -13.40473 -13.37875 -13.12216 -13.08539 -12.77044 -12.73167 -12.40244 -12.14239 -11.95904 -11.95263 -11.71064 -11.63181 -11.51082 -11.09320 -11.08697 -10.98615 -10.58641 -10.32393 -10.22866 -10.02101 -8.92155 -8.86547 -6.27355 1.21558 1.48609 1.52306 1.52814 1.61012 1.81202 1.90082 2.22076 2.35764 2.80390 3.02774 3.14296 3.35698 3.51001 3.68288 3.82659 3.87318 3.91844 3.98517 4.00395 4.12787 4.16487 4.18739 4.27820 4.38699 4.44452 4.53319 4.67714 4.69320 4.74112 4.76777 4.79074 4.85612 4.89787 4.90849 4.95880 4.96984 4.99082 5.26769 5.31208 5.37839 5.57735 5.64381 6.15148 6.22290 6.42546 6.46584 7.06536 7.13404 7.17712 8.51346 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.001410 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.897195 B =19853.101515 C =20585.566650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.398 6.398 5 C 0.080 3.920 6 C -0.134 4.134 7 C 0.522 3.478 8 O -0.581 6.581 9 N -0.704 5.704 10 C 0.126 3.874 11 H 0.106 0.894 12 C -0.126 4.126 13 C 0.115 3.885 14 H 0.097 0.903 15 N -0.699 5.699 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.111 4.111 19 S -0.197 6.197 20 C -0.615 4.615 21 H 0.075 0.925 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.136 2.864 25 H -0.281 1.281 26 H -0.264 1.264 27 H -0.262 1.262 28 C -0.165 4.165 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.416 0.584 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.419 0.581 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.260 0.740 47 H 0.103 0.897 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 29.648 -15.269 33.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 C -0.230 4.230 4 O -0.318 6.318 5 C 0.003 3.997 6 C -0.174 4.174 7 C 0.310 3.690 8 O -0.460 6.460 9 N -0.355 5.355 10 C 0.020 3.980 11 H 0.124 0.876 12 C -0.165 4.165 13 C 0.009 3.991 14 H 0.115 0.885 15 N -0.352 5.352 16 C 0.319 3.681 17 O -0.444 6.444 18 C -0.263 4.263 19 S 0.030 5.970 20 C -0.762 4.762 21 H 0.094 0.906 22 C -0.221 4.221 23 N -0.549 5.549 24 Si 0.953 3.047 25 H -0.206 1.206 26 H -0.189 1.189 27 H -0.187 1.187 28 C -0.205 4.205 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.253 0.747 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.257 0.743 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.071 0.929 47 H 0.121 0.879 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.127 28.191 -14.861 32.021 hybrid contribution 1.143 1.107 -0.821 1.791 sum -1.984 29.298 -15.682 33.290 Atomic orbital electron populations 1.21880 0.92610 1.02725 1.03319 1.22292 0.95775 0.92872 0.87567 1.22284 1.01286 0.96157 1.03287 1.87833 1.36635 1.70361 1.37001 1.22074 0.85439 0.95587 0.96627 1.21460 0.93868 1.01989 1.00055 1.20777 0.87073 0.77754 0.83362 1.90705 1.65274 1.62705 1.27358 1.45656 1.21906 1.52751 1.15227 1.21653 0.85069 0.91676 0.99634 0.87626 1.23667 1.01546 0.94669 0.96594 1.22721 0.95531 0.86847 0.93952 0.88527 1.45709 1.11519 1.19804 1.58181 1.20040 0.87971 0.83041 0.77008 1.90688 1.16837 1.78865 1.58030 1.23254 1.01703 0.97082 1.04261 1.85056 1.15899 1.21569 1.74505 1.24047 0.94949 1.09984 1.47255 0.90648 1.27813 1.01861 0.99417 0.93038 1.70920 1.01181 1.38445 1.44321 0.82728 0.71407 0.73227 0.77310 1.20597 1.18851 1.18709 1.24011 1.02979 0.96961 0.96547 0.91946 0.89493 0.92440 0.92021 0.91916 0.92955 0.90098 0.93014 0.93595 0.86655 0.85799 0.74715 0.88415 0.85737 0.74348 0.86868 0.87129 0.92879 0.87871 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.56 71.98 0.69 -0.82 16 2 C 0.07 0.92 3.34 30.59 0.10 1.02 16 3 C -0.17 -1.80 9.53 71.98 0.69 -1.11 16 4 O -0.40 -6.57 9.99 -148.98 -1.49 -8.05 16 5 C 0.08 1.27 5.04 71.98 0.36 1.63 16 6 C -0.13 -1.66 6.07 29.85 0.18 -1.48 16 7 C 0.52 8.89 7.83 87.66 0.69 9.57 16 8 O -0.58 -14.49 15.58 -3.02 -0.05 -14.54 16 9 N -0.70 -9.33 5.26 -439.75 -2.32 -11.65 16 10 C 0.13 1.76 4.33 45.58 0.20 1.96 16 11 H 0.11 1.66 7.46 -2.38 -0.02 1.64 16 12 C -0.13 -1.29 7.58 31.12 0.24 -1.05 16 13 C 0.11 2.10 4.09 45.52 0.19 2.29 16 14 H 0.10 2.17 7.50 -2.39 -0.02 2.15 16 15 N -0.70 -15.24 5.36 -440.03 -2.36 -17.60 16 16 C 0.53 18.42 7.85 87.66 0.69 19.10 16 17 O -0.57 -24.93 15.48 -3.04 -0.05 -24.98 16 18 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 19 S -0.20 -10.70 19.60 -56.49 -1.11 -11.81 16 20 C -0.61 -35.13 9.50 67.96 0.65 -34.48 16 21 H 0.08 4.02 7.80 -2.91 -0.02 4.00 16 22 C -0.02 -1.04 5.49 84.86 0.47 -0.58 16 23 N -0.91 -57.85 13.67 21.65 0.30 -57.55 16 24 Si 1.14 48.80 29.92 68.60 2.05 50.86 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 27 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 28 C -0.16 -2.95 7.69 31.18 0.24 -2.71 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.76 7.79 -2.39 -0.02 0.74 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.59 7.87 -2.38 -0.02 0.57 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.05 0.86 7.83 -2.39 -0.02 0.84 16 37 H 0.05 0.82 8.04 -2.39 -0.02 0.80 16 38 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 3.73 8.70 -92.71 -0.81 2.93 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.12 0.78 8.11 -2.39 -0.02 0.76 16 43 H 0.42 6.09 8.71 -92.71 -0.81 5.28 16 44 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 45 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 46 H 0.26 17.15 7.13 -92.71 -0.66 16.49 16 47 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -83.92 414.88 0.25 -83.67 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.54 Total: 22.12 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.80 Total: -10.46 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -4.38 Total: -86.80 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -1.58 Total: -47.57 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.05 Total: 50.86 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -1.11 Total: -11.81 kcal Total: -83.92 0.25 -83.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284040742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.484 kcal (2) G-P(sol) polarization free energy of solvation -83.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds