Wall clock time and date at job start Wed Apr 1 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47404 * 2 1 4 4 C 1.42898 * 114.00390 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46824 * 329.99796 * 4 3 2 6 6 C 1.52995 * 109.47421 * 90.00001 * 4 3 2 7 7 C 1.50701 * 109.47130 * 210.00234 * 4 3 2 8 8 O 1.21275 * 120.00404 * 350.78623 * 7 4 3 9 9 N 1.34778 * 119.99684 * 170.78302 * 7 4 3 10 10 C 1.47018 * 125.65088 * 355.00076 * 9 7 4 11 11 C 1.54330 * 107.27250 * 181.07964 * 10 9 7 12 12 C 1.55450 * 102.96765 * 22.19216 * 11 10 9 13 13 H 1.09000 * 111.01225 * 82.52674 * 12 11 10 14 14 N 1.46497 * 111.11439 * 206.46842 * 12 11 10 15 15 C 1.46498 * 120.00658 * 52.09957 * 14 12 11 16 16 C 1.34784 * 119.99403 * 232.09974 * 14 12 11 17 17 O 1.21281 * 120.00321 * 0.02562 * 16 14 12 18 18 C 1.50705 * 119.99675 * 179.97438 * 16 14 12 19 19 S 1.80998 * 109.47173 * 179.97438 * 18 16 14 20 20 C 1.76198 * 100.00258 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99969 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99936 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99493 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00158 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47120 * 89.99815 * 24 22 20 26 26 H 1.48497 * 109.47089 * 210.00218 * 24 22 20 27 27 H 1.48502 * 109.47037 * 330.00175 * 24 22 20 28 28 C 1.47427 * 125.64533 * 175.02404 * 9 7 4 29 29 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46897 * 299.99950 * 1 2 3 31 31 H 1.09001 * 109.46846 * 59.99888 * 1 2 3 32 32 H 1.09008 * 109.47045 * 239.99918 * 2 1 3 33 33 H 1.09001 * 109.47165 * 120.00555 * 2 1 3 34 34 H 1.08993 * 109.47330 * 185.36251 * 6 4 3 35 35 H 1.09000 * 109.47314 * 305.36261 * 6 4 3 36 36 H 1.09003 * 109.47014 * 65.36046 * 6 4 3 37 37 H 1.09002 * 109.87978 * 300.49212 * 10 9 7 38 38 H 1.08997 * 109.88681 * 61.50427 * 10 9 7 39 39 H 1.08993 * 110.72016 * 140.55160 * 11 10 9 40 40 H 1.09002 * 110.71877 * 263.65139 * 11 10 9 41 41 H 1.09001 * 109.46806 * 89.99489 * 15 14 12 42 42 H 1.08998 * 109.47520 * 210.00162 * 15 14 12 43 43 H 1.09004 * 109.46621 * 330.00419 * 15 14 12 44 44 H 1.08999 * 109.47500 * 300.00368 * 18 16 14 45 45 H 1.08998 * 109.46840 * 60.00504 * 18 16 14 46 46 H 0.96998 * 119.99810 * 179.97438 * 23 22 20 47 47 H 1.08997 * 110.36845 * 274.68729 * 28 9 7 48 48 H 1.08997 * 110.37052 * 36.90451 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6014 0.5130 6 6 3.9388 1.5006 -1.4432 7 6 3.8348 2.7262 0.7099 8 8 2.9927 3.5407 1.0234 9 7 5.1319 2.9534 0.9969 10 6 6.2376 2.0114 0.7696 11 6 7.5287 2.6900 1.2737 12 6 6.9961 3.7517 2.2766 13 1 6.8009 3.3051 3.2515 14 7 7.9242 4.8791 2.3941 15 6 8.3913 5.5720 1.1908 16 6 8.3484 5.2788 3.6093 17 8 7.9622 4.7049 4.6055 18 6 9.3037 6.4381 3.7302 19 16 9.6812 6.7293 5.4763 20 6 10.7831 8.0962 5.3273 21 1 11.0254 8.4906 4.3516 22 6 11.3395 8.6661 6.4641 23 7 12.1630 9.6869 6.3527 24 14 10.9198 7.9844 8.1518 25 1 11.8914 6.9206 8.5116 26 1 10.9856 9.0756 9.1568 27 1 9.5485 7.4149 8.1286 28 6 5.6770 4.1876 1.5913 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.0287 1.4906 -1.4452 35 1 3.5665 0.6305 -1.9840 36 1 3.5829 2.4095 -1.9283 37 1 6.0608 1.0911 1.3264 38 1 6.3234 1.7901 -0.2942 39 1 8.1707 1.9694 1.7802 40 1 8.0607 3.1665 0.4503 41 1 7.7119 6.3916 0.9568 42 1 9.3919 5.9677 1.3646 43 1 8.4173 4.8720 0.3555 44 1 10.2236 6.2086 3.1925 45 1 8.8468 7.3312 3.3039 46 1 12.5516 10.0854 7.1471 47 1 5.8787 4.9255 0.8149 48 1 4.9829 4.5927 2.3276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687196607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:20 Heat of formation + Delta-G solvation = -104.272114 kcal Electronic energy + Delta-G solvation = -27839.389565 eV Core-core repulsion = 23828.369453 eV Total energy + Delta-G solvation = -4011.020112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83669 -39.72930 -38.40898 -37.35915 -35.17584 -33.06445 -32.45934 -31.56379 -30.49039 -29.81436 -28.36389 -26.97005 -25.65804 -25.27104 -23.49067 -22.89455 -21.64230 -19.88150 -19.32189 -17.87887 -17.72306 -17.35350 -17.14228 -16.35873 -16.11818 -15.74815 -15.52066 -15.22181 -14.97447 -14.84220 -14.22703 -13.89007 -13.87389 -13.74500 -13.41858 -13.34304 -13.16276 -12.98781 -12.84959 -12.81407 -12.62485 -12.45860 -12.39457 -12.18143 -12.05955 -11.81169 -11.68100 -11.53327 -11.28034 -11.05564 -11.02518 -10.63052 -10.35644 -9.88942 -9.83747 -9.58749 -9.10436 -9.02257 -8.70559 -8.52334 -6.94989 -6.30932 -4.03134 2.16848 2.26067 2.66818 2.80302 3.10916 3.31470 3.36750 3.49312 3.55644 3.96221 4.11484 4.31250 4.32611 4.39393 4.44719 4.49645 4.58591 4.63093 4.73401 4.76178 4.80884 4.89030 4.94168 4.95940 5.08178 5.11294 5.14211 5.16993 5.26560 5.29755 5.39775 5.45378 5.46993 5.59206 5.60645 5.63794 5.71157 5.73253 5.76888 5.83458 5.95843 6.42164 6.63121 7.08377 7.29069 7.82105 7.91999 8.31136 8.39237 9.15241 10.78218 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027641 B = 0.001889 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.745419 B =14822.974736 C =15268.279977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.077 3.923 5 H 0.084 0.916 6 C -0.171 4.171 7 C 0.531 3.469 8 O -0.513 6.513 9 N -0.617 5.617 10 C 0.098 3.902 11 C -0.145 4.145 12 C 0.133 3.867 13 H 0.118 0.882 14 N -0.613 5.613 15 C 0.072 3.928 16 C 0.535 3.465 17 O -0.514 6.514 18 C -0.120 4.120 19 S -0.143 6.143 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.098 3.902 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.271 0.729 47 H 0.074 0.926 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.592 -21.484 -19.574 32.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.015 3.985 5 H 0.102 0.898 6 C -0.229 4.229 7 C 0.318 3.682 8 O -0.387 6.387 9 N -0.355 5.355 10 C -0.026 4.026 11 C -0.184 4.184 12 C 0.027 3.973 13 H 0.136 0.864 14 N -0.348 5.348 15 C -0.071 4.071 16 C 0.323 3.677 17 O -0.388 6.388 18 C -0.271 4.271 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.026 4.026 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.735 -21.590 -17.851 32.131 hybrid contribution 0.793 0.376 -0.555 1.038 sum -14.942 -21.214 -18.405 31.813 Atomic orbital electron populations 1.21733 0.93263 1.02311 1.03540 1.22615 0.96114 0.83350 1.00125 1.88065 1.18171 1.26510 1.94933 1.21793 0.83864 0.96090 0.96711 0.89779 1.22263 1.01824 1.04002 0.94797 1.20052 0.80648 0.88246 0.79253 1.90754 1.49104 1.47137 1.51707 1.48274 1.06059 1.17855 1.63271 1.22188 0.86034 0.93094 1.01243 1.23105 0.96540 0.98838 0.99883 1.22112 0.87797 0.86783 1.00579 0.86377 1.47644 1.46954 1.33293 1.06918 1.21872 1.00855 0.97146 0.87180 1.20382 0.80861 0.84303 0.82131 1.90701 1.56566 1.55692 1.35869 1.23313 1.00563 0.98398 1.04814 1.84818 1.61113 1.43944 1.01768 1.22297 1.30264 1.16452 0.97902 0.89364 1.24706 0.93535 0.93872 0.99138 1.69936 1.29196 1.22032 1.30431 0.86740 0.81889 0.79593 0.83668 1.19212 1.19913 1.15921 1.22551 0.95248 0.86781 0.98004 0.90921 0.91564 0.91695 0.93137 0.93161 0.90674 0.90994 0.91052 0.90885 0.90610 0.89038 0.89493 0.92296 0.90075 0.90937 0.88364 0.88323 0.91921 0.90748 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.72 9.54 -54.97 -0.52 -4.24 16 4 C 0.08 0.64 2.53 -27.89 -0.07 0.56 16 5 H 0.08 0.49 7.60 -51.93 -0.39 0.09 16 6 C -0.17 -0.98 9.40 37.15 0.35 -0.63 16 7 C 0.53 6.19 7.17 -10.98 -0.08 6.11 16 8 O -0.51 -8.49 16.75 -14.18 -0.24 -8.73 16 9 N -0.62 -5.84 3.33 -170.52 -0.57 -6.40 16 10 C 0.10 0.56 6.17 -3.06 -0.02 0.55 16 11 C -0.15 -0.97 6.49 -24.73 -0.16 -1.13 16 12 C 0.13 1.40 3.47 -65.62 -0.23 1.18 16 13 H 0.12 1.53 7.02 -51.93 -0.36 1.16 16 14 N -0.61 -7.47 2.91 -171.29 -0.50 -7.97 16 15 C 0.07 0.63 9.20 59.85 0.55 1.18 16 16 C 0.54 9.18 7.69 -10.98 -0.08 9.09 16 17 O -0.51 -10.74 15.25 5.56 0.08 -10.66 16 18 C -0.12 -2.25 4.71 36.01 0.17 -2.08 16 19 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 21 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 24 Si 0.86 21.65 27.74 -169.99 -4.71 16.93 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 28 C 0.10 1.04 6.52 -2.53 -0.02 1.03 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.24 7.78 -51.92 -0.40 -0.16 16 33 H 0.05 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.07 0.29 5.70 -51.93 -0.30 0.00 16 35 H 0.07 0.31 7.78 -51.93 -0.40 -0.09 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 38 H 0.08 0.28 5.92 -51.93 -0.31 -0.03 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.48 5.97 -51.93 -0.31 0.17 16 41 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.08 0.72 6.44 -51.93 -0.33 0.38 16 43 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 44 H 0.10 1.68 7.40 -51.92 -0.38 1.30 16 45 H 0.10 1.74 8.11 -51.92 -0.42 1.31 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.07 0.73 7.28 -51.93 -0.38 0.36 16 48 H 0.09 1.14 7.99 -51.93 -0.41 0.72 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -37.35 396.89 -8.12 -45.46 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -7.67 Total: -3.41 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 1.25 Total: 4.11 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.29 Total: -39.90 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.68 Total: -23.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.35 -8.12 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687196607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.807 kcal (2) G-P(sol) polarization free energy of solvation -37.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds