Wall clock time and date at job start Wed Apr 1 2020 02:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99663 * 2 1 4 4 H 1.48500 * 109.47307 * 274.98823 * 3 2 1 5 5 H 1.48500 * 109.47473 * 34.99059 * 3 2 1 6 6 H 1.48500 * 109.47420 * 154.98883 * 3 2 1 7 7 C 1.38805 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99958 * 185.08415 * 7 2 1 9 9 N 1.36931 * 120.00280 * 5.08135 * 7 2 1 10 10 C 1.47718 * 134.44143 * 173.50536 * 9 7 2 11 11 C 1.53276 * 85.91200 * 155.89127 * 10 9 7 12 12 C 1.47713 * 134.43937 * 353.56920 * 9 7 2 13 13 C 1.53773 * 114.70668 * 267.36137 * 11 10 9 14 14 C 1.55455 * 102.01825 * 250.23091 * 13 11 10 15 15 C 1.55008 * 101.02722 * 326.40996 * 14 13 11 16 16 H 1.08998 * 110.38640 * 277.12173 * 15 14 13 17 17 C 1.52992 * 110.30118 * 155.01162 * 15 14 13 18 18 N 1.46501 * 109.47328 * 182.79871 * 17 15 14 19 19 C 1.34779 * 120.00411 * 180.27514 * 18 17 15 20 20 O 1.21276 * 119.99563 * 359.72465 * 19 18 17 21 21 C 1.50698 * 120.00159 * 179.71805 * 19 18 17 22 22 H 1.09000 * 110.43398 * 300.70383 * 21 19 18 23 23 C 1.54261 * 110.48542 * 178.16016 * 21 19 18 24 24 C 1.53875 * 106.59664 * 217.71407 * 23 21 19 25 25 C 1.54266 * 106.60107 * 0.02562 * 24 23 21 26 26 F 1.39901 * 110.48490 * 142.28882 * 25 24 23 27 27 F 1.39901 * 110.48274 * 264.80017 * 25 24 23 28 28 C 1.54889 * 110.48333 * 63.24514 * 21 19 18 29 29 O 1.42530 * 115.51196 * 140.19857 * 11 10 9 30 30 H 0.97001 * 119.99967 * 359.97438 * 1 2 3 31 31 H 1.09001 * 113.79638 * 41.63637 * 10 9 7 32 32 H 1.09004 * 113.79757 * 270.14288 * 10 9 7 33 33 H 1.09001 * 113.80516 * 89.85650 * 12 9 7 34 34 H 1.09002 * 113.79949 * 318.35707 * 12 9 7 35 35 H 1.08999 * 110.92237 * 8.41532 * 13 11 10 36 36 H 1.09008 * 110.92156 * 132.01287 * 13 11 10 37 37 H 1.08999 * 111.10746 * 208.47081 * 14 13 11 38 38 H 1.08996 * 111.10957 * 84.35213 * 14 13 11 39 39 H 1.09003 * 109.47258 * 62.79509 * 17 15 14 40 40 H 1.08998 * 109.47318 * 302.79430 * 17 15 14 41 41 H 0.96999 * 119.99931 * 359.97438 * 18 17 15 42 42 H 1.09003 * 110.03298 * 336.99872 * 23 21 19 43 43 H 1.09001 * 110.03097 * 98.43153 * 23 21 19 44 44 H 1.09007 * 110.03522 * 119.28696 * 24 23 21 45 45 H 1.09004 * 110.03446 * 240.71057 * 24 23 21 46 46 H 1.09001 * 110.75675 * 274.93403 * 28 21 19 47 47 H 1.09000 * 110.75909 * 38.30021 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4122 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0824 9 7 1.3297 -2.3856 -0.1061 10 6 1.7306 -3.7991 -0.2585 11 6 0.3716 -4.1375 0.3644 12 6 -0.0992 -2.7598 -0.1143 13 6 0.3911 -4.3158 1.8917 14 6 0.1614 -5.8459 2.0419 15 6 -0.7703 -6.1257 0.8352 16 1 -1.8039 -5.8929 1.0915 17 6 -0.6489 -7.5869 0.3984 18 7 -1.4851 -7.8147 -0.7827 19 6 -1.5402 -9.0391 -1.3435 20 8 -0.8937 -9.9510 -0.8732 21 6 -2.4053 -9.2749 -2.5547 22 1 -3.4464 -9.0433 -2.3297 23 6 -2.2691 -10.7329 -3.0398 24 6 -2.2995 -10.6890 -4.5777 25 6 -2.4525 -9.2059 -4.9734 26 9 -1.6941 -8.9228 -6.1144 27 9 -3.7987 -8.8938 -5.1917 28 6 -1.9072 -8.4254 -3.7502 29 8 -0.3063 -5.2522 -0.2094 30 1 -0.4850 0.8401 0.0004 31 1 2.5815 -4.0842 0.3603 32 1 1.8309 -4.1185 -1.2958 33 1 -0.5460 -2.7685 -1.1085 34 1 -0.6993 -2.2208 0.6188 35 1 1.3567 -4.0246 2.3052 36 1 -0.4164 -3.7525 2.3597 37 1 -0.3358 -6.0775 2.9838 38 1 1.0987 -6.3945 1.9497 39 1 -0.9795 -8.2370 1.2085 40 1 0.3904 -7.8085 0.1559 41 1 -2.0024 -7.0854 -1.1586 42 1 -1.3239 -11.1538 -2.6969 43 1 -3.1014 -11.3298 -2.6668 44 1 -1.3691 -11.0887 -4.9812 45 1 -3.1465 -11.2648 -4.9510 46 1 -2.3274 -7.4204 -3.7117 47 1 -0.8180 -8.3892 -3.7712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053609421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:42 Heat of formation + Delta-G solvation = -137.126080 kcal Electronic energy + Delta-G solvation = -30628.680962 eV Core-core repulsion = 26062.395808 eV Total energy + Delta-G solvation = -4566.285153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.16599 -47.29251 -40.37806 -39.74889 -37.11862 -36.48628 -34.62292 -32.12591 -31.94436 -30.34172 -28.97846 -28.38057 -26.87385 -24.96873 -24.08740 -22.46173 -21.80023 -21.40471 -21.26247 -20.03779 -18.80384 -18.24163 -17.39598 -16.92106 -16.86651 -16.57374 -16.30784 -15.86892 -15.46287 -15.16626 -14.71815 -14.67119 -14.36631 -14.26781 -13.85777 -13.69966 -13.62032 -13.50238 -13.21822 -12.92043 -12.64463 -12.58906 -12.41967 -12.16618 -11.98374 -11.82373 -11.77873 -11.45630 -11.24228 -11.11953 -11.08111 -11.00539 -10.87126 -10.71906 -10.54591 -10.38930 -10.04783 -9.99383 -9.60965 -9.22355 -8.83621 -8.77309 -6.92661 -5.83304 -3.14743 2.36890 2.90270 3.36418 3.37576 3.41611 3.43608 3.45089 3.78366 3.92342 4.05210 4.44397 4.47939 4.63270 4.68752 4.72067 4.77592 4.80529 4.84982 4.97575 5.03610 5.13203 5.21291 5.23859 5.27470 5.39793 5.45370 5.50227 5.51945 5.62266 5.63779 5.66990 5.78390 5.87126 6.01826 6.24354 6.31207 6.34346 6.45414 6.57047 6.68952 6.98714 7.17600 7.31823 7.47798 7.65671 7.91904 8.00611 8.99372 9.65237 10.54466 11.34656 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002365 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.952128 B =11834.887713 C =13233.758890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.118 3.882 11 C 0.056 3.944 12 C 0.168 3.832 13 C -0.113 4.113 14 C -0.148 4.148 15 C 0.066 3.934 16 H 0.075 0.925 17 C 0.123 3.877 18 N -0.717 5.717 19 C 0.522 3.478 20 O -0.541 6.541 21 C -0.114 4.114 22 H 0.112 0.888 23 C -0.108 4.108 24 C -0.161 4.161 25 C 0.280 3.720 26 F -0.195 7.195 27 F -0.194 7.194 28 C -0.150 4.150 29 O -0.365 6.365 30 H 0.254 0.746 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.408 0.592 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -21.539 -2.574 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.350 4.350 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.009 4.009 11 C 0.016 3.984 12 C 0.042 3.958 13 C -0.150 4.150 14 C -0.186 4.186 15 C 0.008 3.992 16 H 0.092 0.908 17 C 0.000 4.000 18 N -0.368 5.368 19 C 0.308 3.692 20 O -0.418 6.418 21 C -0.135 4.135 22 H 0.130 0.870 23 C -0.146 4.146 24 C -0.199 4.199 25 C 0.244 3.756 26 F -0.176 7.176 27 F -0.175 7.175 28 C -0.188 4.188 29 O -0.283 6.283 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.243 0.757 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.122 0.878 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.930 -21.862 -2.444 23.064 hybrid contribution 0.116 1.559 -0.353 1.603 sum -6.814 -20.303 -2.798 21.598 Atomic orbital electron populations 1.69835 1.05063 1.25474 1.56094 1.24828 0.95704 0.97583 1.02182 0.86113 0.78723 0.83448 0.77576 1.21558 1.21673 1.20521 1.18969 0.90708 0.81670 1.43610 0.90080 1.45641 1.02294 1.00585 1.84738 1.22811 0.94054 0.86309 0.97694 1.24333 0.94663 0.86958 0.92486 1.22446 0.88150 0.86566 0.98592 1.22617 1.03732 0.93870 0.94803 1.23264 0.99924 0.97605 0.97824 1.23171 0.98392 0.89133 0.88552 0.90767 1.21604 0.95958 0.94946 0.87529 1.45916 1.48228 1.11516 1.31162 1.20208 0.82055 0.82517 0.84459 1.90694 1.44668 1.42785 1.63679 1.22100 1.00997 0.97392 0.93039 0.87018 1.22041 1.05304 0.94711 0.92532 1.23167 1.05629 0.93045 0.98062 1.21895 0.73851 0.96751 0.83117 1.93026 1.75600 1.94961 1.53999 1.93022 1.34529 1.94396 1.95505 1.23463 1.04074 1.00102 0.91206 1.88343 1.74371 1.34950 1.30674 0.93561 0.93704 0.94284 0.94821 0.91053 0.89726 0.90355 0.90136 0.90326 0.90443 0.90712 0.75750 0.88467 0.90074 0.88268 0.88848 0.87830 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 11.51 55.49 0.64 -26.18 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.87 29.56 -169.99 -5.02 16.84 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.22 -6.16 10.69 -15.06 -0.16 -6.32 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.60 -15.33 3.67 -181.26 -0.66 -16.00 16 10 C 0.12 2.44 8.37 -3.24 -0.03 2.41 16 11 C 0.06 1.03 1.68 -90.05 -0.15 0.88 16 12 C 0.17 3.93 6.92 -3.25 -0.02 3.91 16 13 C -0.11 -1.76 6.32 -25.03 -0.16 -1.92 16 14 C -0.15 -1.73 6.58 -24.37 -0.16 -1.89 16 15 C 0.07 0.79 3.52 -25.68 -0.09 0.70 16 16 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 17 C 0.12 1.34 5.40 -4.05 -0.02 1.32 16 18 N -0.72 -7.26 5.44 -60.30 -0.33 -7.59 16 19 C 0.52 5.52 7.14 -10.99 -0.08 5.44 16 20 O -0.54 -7.49 15.44 5.56 0.09 -7.41 16 21 C -0.11 -0.88 3.25 -90.12 -0.29 -1.17 16 22 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 23 C -0.11 -0.78 6.17 -25.62 -0.16 -0.93 16 24 C -0.16 -1.08 6.42 -25.61 -0.16 -1.24 16 25 C 0.28 2.46 2.49 -25.01 -0.06 2.39 16 26 F -0.20 -2.10 17.17 2.25 0.04 -2.06 16 27 F -0.19 -1.93 17.17 2.25 0.04 -1.89 16 28 C -0.15 -1.21 5.89 -24.68 -0.15 -1.36 16 29 O -0.37 -5.86 10.67 -35.23 -0.38 -6.24 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.04 0.87 7.98 -51.93 -0.41 0.46 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.80 7.25 -51.93 -0.38 1.43 16 35 H 0.08 1.39 7.83 -51.93 -0.41 0.98 16 36 H 0.08 1.24 8.01 -51.92 -0.42 0.82 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.41 3.68 8.41 -40.82 -0.34 3.33 16 42 H 0.10 0.84 6.87 -51.93 -0.36 0.48 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.60 8.11 -51.92 -0.42 0.18 16 45 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -32.65 386.39 -8.90 -41.55 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.34 Total: 1.19 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.79 Total: 1.96 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.35 Total: -49.78 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.29 Total: -13.64 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.95 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.65 -8.90 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053609421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.574 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds