Wall clock time and date at job start Wed Apr 1 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00521 * 2 1 4 4 H 1.48493 * 109.47725 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46881 * 300.00628 * 3 2 1 6 6 H 1.48498 * 109.47007 * 59.99731 * 3 2 1 7 7 C 1.38821 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.45981 * 125.54824 * 0.06756 * 9 7 2 11 11 C 1.54903 * 107.28542 * 180.34837 * 10 9 7 12 12 H 1.08998 * 112.08877 * 143.31572 * 11 10 9 13 13 O 1.42784 * 107.17107 * 266.41414 * 11 10 9 14 14 C 1.42623 * 115.83861 * 166.91464 * 13 11 10 15 15 C 1.53573 * 108.29423 * 295.40395 * 14 13 11 16 16 N 1.47038 * 107.23529 * 55.94358 * 15 14 13 17 17 C 1.34780 * 120.04261 * 130.35592 * 16 15 14 18 18 O 1.21277 * 120.00188 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99474 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46851 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.05508 * 306.41323 * 20 19 17 22 22 C 1.54261 * 110.03320 * 67.83312 * 20 19 17 23 23 C 1.54888 * 104.19672 * 142.89314 * 22 20 19 24 24 C 1.54891 * 102.75120 * 322.06034 * 23 22 20 25 25 C 1.53876 * 110.03313 * 185.00242 * 20 19 17 26 26 F 1.39903 * 110.03215 * 359.97438 * 25 20 19 27 27 F 1.39898 * 110.03577 * 121.42861 * 25 20 19 28 28 C 1.45531 * 119.92062 * 310.62977 * 16 15 14 29 29 H 1.08997 * 110.29598 * 165.31080 * 28 16 15 30 30 C 1.47605 * 125.63830 * 180.02562 * 9 7 2 31 31 H 0.97001 * 119.99580 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.07364 * 60.80024 * 10 9 7 33 33 H 1.09004 * 109.63402 * 299.64493 * 10 9 7 34 34 H 1.08993 * 109.69717 * 175.69981 * 14 13 11 35 35 H 1.09000 * 109.69392 * 55.10228 * 14 13 11 36 36 H 1.08995 * 109.90037 * 296.50670 * 15 14 13 37 37 H 1.09005 * 109.96356 * 175.40710 * 15 14 13 38 38 H 1.09005 * 109.47121 * 60.00219 * 19 17 16 39 39 H 1.08991 * 109.47551 * 299.99877 * 19 17 16 40 40 H 1.09000 * 110.48928 * 261.57322 * 22 20 19 41 41 H 1.08999 * 110.48469 * 24.21732 * 22 20 19 42 42 H 1.09005 * 110.75648 * 80.37263 * 23 22 20 43 43 H 1.08999 * 110.75852 * 203.74195 * 23 22 20 44 44 H 1.09004 * 110.48613 * 279.26383 * 24 23 22 45 45 H 1.08994 * 110.48745 * 156.61801 * 24 23 22 46 46 H 1.09005 * 110.42472 * 37.70650 * 30 9 7 47 47 H 1.08999 * 110.42445 * 275.22964 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1275 -2.5292 -0.0014 11 6 -0.4427 -4.0458 0.0079 12 1 -1.3198 -4.2784 0.6117 13 8 -0.6104 -4.4499 -1.3512 14 6 -0.6203 -5.8568 -1.5847 15 6 0.7623 -6.4160 -1.2183 16 7 1.0328 -6.0308 0.1747 17 6 1.4467 -6.9566 1.0626 18 8 1.6700 -6.6379 2.2112 19 6 1.6318 -8.3875 0.6279 20 6 2.1042 -9.2250 1.8181 21 1 2.9902 -8.7737 2.2645 22 6 0.9795 -9.3320 2.8685 23 6 1.1071 -10.7753 3.4159 24 6 1.4718 -11.5901 2.1501 25 6 2.4172 -10.6606 1.3613 26 9 2.1797 -10.7893 -0.0114 27 9 3.7494 -10.9756 1.6498 28 6 0.8475 -4.6499 0.5951 29 1 0.8355 -4.5843 1.6830 30 6 1.9343 -3.7328 -0.0005 31 1 -0.4849 0.8401 0.0004 32 1 -0.5476 -2.0686 -0.8955 33 1 -0.5417 -2.0588 0.8904 34 1 -0.8292 -6.0532 -2.6363 35 1 -1.3830 -6.3268 -0.9640 36 1 1.5207 -5.9902 -1.8751 37 1 0.7604 -7.5023 -1.3092 38 1 2.3771 -8.4325 -0.1662 39 1 0.6844 -8.7809 0.2597 40 1 1.1329 -8.6062 3.6671 41 1 0.0057 -9.1862 2.4009 42 1 1.9030 -10.8380 4.1581 43 1 0.1597 -11.1150 3.8343 44 1 0.5775 -11.8088 1.5665 45 1 1.9844 -12.5120 2.4243 46 1 2.8274 -3.7460 0.6242 47 1 2.1760 -4.0409 -1.0178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083175595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:33 Heat of formation + Delta-G solvation = -146.793663 kcal Electronic energy + Delta-G solvation = -31974.597317 eV Core-core repulsion = 27407.892945 eV Total energy + Delta-G solvation = -4566.704371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.21356 -47.26700 -40.61770 -38.84055 -37.35800 -35.86377 -34.72061 -32.54244 -31.85668 -29.84597 -28.26293 -27.92407 -27.59132 -25.98863 -24.26236 -23.31980 -21.67971 -21.22766 -20.35702 -20.11412 -18.65590 -18.05539 -17.48561 -17.12273 -16.69654 -16.51770 -16.07998 -15.61235 -15.26416 -15.11016 -14.81255 -14.54063 -14.44331 -14.29050 -14.14769 -13.72877 -13.63905 -13.50811 -13.40620 -12.81146 -12.73885 -12.50912 -12.22803 -12.14770 -11.93319 -11.73592 -11.54002 -11.29695 -11.22141 -11.10646 -11.05297 -11.00313 -10.90565 -10.79368 -10.55322 -10.12043 -9.96509 -9.83192 -9.63846 -9.57481 -8.66450 -8.30285 -6.86387 -5.73456 -3.07053 2.61310 2.86245 3.40863 3.43579 3.46565 3.48967 3.58434 3.84707 3.98649 4.08651 4.46976 4.50728 4.54744 4.67283 4.81145 4.83096 4.93153 4.95091 4.99995 5.10315 5.17633 5.22389 5.27606 5.33530 5.35991 5.43073 5.51405 5.54430 5.63005 5.67385 5.68592 5.81119 5.82432 5.86889 5.95597 6.03028 6.18904 6.51284 6.59963 6.79730 7.29168 7.42221 7.50191 7.75406 7.85353 8.17409 8.23436 9.20119 9.78856 10.42875 11.38731 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.002632 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.727699 B =10635.709029 C =11052.571682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.189 3.811 11 C 0.055 3.945 12 H 0.070 0.930 13 O -0.365 6.365 14 C 0.048 3.952 15 C 0.069 3.931 16 N -0.598 5.598 17 C 0.514 3.486 18 O -0.536 6.536 19 C -0.132 4.132 20 C -0.114 4.114 21 H 0.110 0.890 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.161 4.161 25 C 0.282 3.718 26 F -0.199 7.199 27 F -0.197 7.197 28 C 0.098 3.902 29 H 0.110 0.890 30 C 0.136 3.864 31 H 0.253 0.747 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -24.792 1.522 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.064 3.936 11 C -0.003 4.003 12 H 0.088 0.912 13 O -0.283 6.283 14 C -0.030 4.030 15 C -0.054 4.054 16 N -0.331 5.331 17 C 0.302 3.698 18 O -0.413 6.413 19 C -0.172 4.172 20 C -0.134 4.134 21 H 0.128 0.872 22 C -0.149 4.149 23 C -0.162 4.162 24 C -0.199 4.199 25 C 0.246 3.754 26 F -0.179 7.179 27 F -0.178 7.178 28 C -0.006 4.006 29 H 0.128 0.872 30 C 0.009 3.991 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.061 0.939 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.190 -24.244 1.949 24.351 hybrid contribution 0.648 0.533 -0.204 0.864 sum -0.542 -23.711 1.744 23.781 Atomic orbital electron populations 1.69924 1.04880 1.25117 1.57124 1.24814 0.95776 0.97739 1.02067 0.85992 0.78700 0.83526 0.77228 1.20493 1.21712 1.21703 1.19099 0.90524 0.82016 1.43814 0.90225 1.44112 1.01409 0.99820 1.87343 1.21208 0.85069 0.85037 1.02300 1.24005 0.94744 0.99333 0.82259 0.91175 1.87965 1.93342 1.20217 1.26781 1.22844 0.94533 0.84036 1.01622 1.22600 0.99286 1.00662 0.82891 1.47649 1.66455 1.08919 1.10031 1.20449 0.76820 0.87067 0.85442 1.90696 1.50480 1.81547 1.18559 1.21717 1.04154 0.92473 0.98877 1.22543 1.02700 0.91236 0.96905 0.87184 1.22406 0.97235 0.96893 0.98343 1.22525 1.02736 0.94773 0.96204 1.23359 0.99833 0.98730 0.97949 1.21906 0.78990 0.97251 0.77236 1.92986 1.94205 1.96962 1.33790 1.93022 1.37453 1.94236 1.93101 1.22396 0.97692 0.79297 1.01240 0.87176 1.21600 0.94251 0.85940 0.97296 0.93640 0.91925 0.92195 0.88119 0.93285 0.89993 0.89107 0.88137 0.88166 0.89030 0.90893 0.90420 0.89941 0.88387 0.89024 0.93924 0.95831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.29 55.49 0.57 -26.46 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.38 10.28 -15.05 -0.15 -6.54 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.59 3.37 -170.84 -0.58 -16.16 16 10 C 0.19 4.63 5.00 -3.32 -0.02 4.61 16 11 C 0.06 1.07 4.00 -25.16 -0.10 0.97 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 13 O -0.36 -6.64 9.98 -35.23 -0.35 -6.99 16 14 C 0.05 0.60 7.02 37.45 0.26 0.86 16 15 C 0.07 0.80 6.27 -3.45 -0.02 0.78 16 16 N -0.60 -8.81 2.76 -164.70 -0.45 -9.27 16 17 C 0.51 7.20 7.46 -10.99 -0.08 7.12 16 18 O -0.54 -9.21 14.23 5.56 0.08 -9.13 16 19 C -0.13 -1.31 2.53 -27.88 -0.07 -1.38 16 20 C -0.11 -1.12 2.39 -89.50 -0.21 -1.33 16 21 H 0.11 1.25 7.80 -51.93 -0.41 0.84 16 22 C -0.11 -0.97 5.43 -25.08 -0.14 -1.10 16 23 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 24 C -0.16 -1.05 6.40 -25.07 -0.16 -1.21 16 25 C 0.28 2.57 2.53 -25.61 -0.06 2.51 16 26 F -0.20 -1.94 15.45 2.25 0.03 -1.91 16 27 F -0.20 -2.16 17.04 2.25 0.04 -2.12 16 28 C 0.10 1.83 3.19 -67.27 -0.21 1.62 16 29 H 0.11 2.22 7.08 -51.93 -0.37 1.86 16 30 C 0.14 2.96 6.80 -2.82 -0.02 2.95 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.06 1.73 7.31 -51.93 -0.38 1.35 16 33 H 0.06 1.59 7.41 -51.93 -0.38 1.21 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 37 H 0.09 0.74 5.95 -51.93 -0.31 0.43 16 38 H 0.10 0.94 7.61 -51.93 -0.40 0.54 16 39 H 0.10 0.80 7.42 -51.93 -0.39 0.41 16 40 H 0.09 0.95 7.66 -51.93 -0.40 0.55 16 41 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 45 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.02 0.52 7.34 -51.93 -0.38 0.14 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -32.68 367.84 -8.52 -41.20 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.13 Total: -0.49 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.26 Total: 8.55 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.46 Total: -51.88 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.27 Total: -16.12 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.03 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.68 -8.52 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083175595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.592 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds