Wall clock time and date at job start Wed Apr 1 2020 02:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00521 * 2 1 4 4 H 1.48493 * 109.47725 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46881 * 300.00628 * 3 2 1 6 6 H 1.48498 * 109.47007 * 59.99731 * 3 2 1 7 7 C 1.38821 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.45981 * 125.54824 * 0.06756 * 9 7 2 11 11 C 1.54903 * 107.28542 * 180.34837 * 10 9 7 12 12 H 1.08998 * 112.08877 * 143.31572 * 11 10 9 13 13 O 1.42784 * 107.17107 * 266.41414 * 11 10 9 14 14 C 1.42623 * 115.83861 * 166.91464 * 13 11 10 15 15 C 1.53573 * 108.29423 * 295.40395 * 14 13 11 16 16 N 1.47038 * 107.23529 * 55.94358 * 15 14 13 17 17 C 1.34780 * 120.04261 * 130.35592 * 16 15 14 18 18 O 1.21277 * 120.00188 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99474 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46851 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.05508 * 306.41323 * 20 19 17 22 22 C 1.54261 * 110.03320 * 67.83312 * 20 19 17 23 23 C 1.54888 * 104.19672 * 142.89314 * 22 20 19 24 24 C 1.54891 * 102.75120 * 322.06034 * 23 22 20 25 25 C 1.53876 * 110.03313 * 185.00242 * 20 19 17 26 26 F 1.39903 * 110.03215 * 359.97438 * 25 20 19 27 27 F 1.39898 * 110.03577 * 121.42861 * 25 20 19 28 28 C 1.45531 * 119.92062 * 310.62977 * 16 15 14 29 29 H 1.08997 * 110.29598 * 165.31080 * 28 16 15 30 30 C 1.47605 * 125.63830 * 180.02562 * 9 7 2 31 31 H 0.97001 * 119.99580 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.07364 * 60.80024 * 10 9 7 33 33 H 1.09004 * 109.63402 * 299.64493 * 10 9 7 34 34 H 1.08993 * 109.69717 * 175.69981 * 14 13 11 35 35 H 1.09000 * 109.69392 * 55.10228 * 14 13 11 36 36 H 1.08995 * 109.90037 * 296.50670 * 15 14 13 37 37 H 1.09005 * 109.96356 * 175.40710 * 15 14 13 38 38 H 1.09005 * 109.47121 * 60.00219 * 19 17 16 39 39 H 1.08991 * 109.47551 * 299.99877 * 19 17 16 40 40 H 1.09000 * 110.48928 * 261.57322 * 22 20 19 41 41 H 1.08999 * 110.48469 * 24.21732 * 22 20 19 42 42 H 1.09005 * 110.75648 * 80.37263 * 23 22 20 43 43 H 1.08999 * 110.75852 * 203.74195 * 23 22 20 44 44 H 1.09004 * 110.48613 * 279.26383 * 24 23 22 45 45 H 1.08994 * 110.48745 * 156.61801 * 24 23 22 46 46 H 1.09005 * 110.42472 * 37.70650 * 30 9 7 47 47 H 1.08999 * 110.42445 * 275.22964 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1275 -2.5292 -0.0014 11 6 -0.4427 -4.0458 0.0079 12 1 -1.3198 -4.2784 0.6117 13 8 -0.6104 -4.4499 -1.3512 14 6 -0.6203 -5.8568 -1.5847 15 6 0.7623 -6.4160 -1.2183 16 7 1.0328 -6.0308 0.1747 17 6 1.4467 -6.9566 1.0626 18 8 1.6700 -6.6379 2.2112 19 6 1.6318 -8.3875 0.6279 20 6 2.1042 -9.2250 1.8181 21 1 2.9902 -8.7737 2.2645 22 6 0.9795 -9.3320 2.8685 23 6 1.1071 -10.7753 3.4159 24 6 1.4718 -11.5901 2.1501 25 6 2.4172 -10.6606 1.3613 26 9 2.1797 -10.7893 -0.0114 27 9 3.7494 -10.9756 1.6498 28 6 0.8475 -4.6499 0.5951 29 1 0.8355 -4.5843 1.6830 30 6 1.9343 -3.7328 -0.0005 31 1 -0.4849 0.8401 0.0004 32 1 -0.5476 -2.0686 -0.8955 33 1 -0.5417 -2.0588 0.8904 34 1 -0.8292 -6.0532 -2.6363 35 1 -1.3830 -6.3268 -0.9640 36 1 1.5207 -5.9902 -1.8751 37 1 0.7604 -7.5023 -1.3092 38 1 2.3771 -8.4325 -0.1662 39 1 0.6844 -8.7809 0.2597 40 1 1.1329 -8.6062 3.6671 41 1 0.0057 -9.1862 2.4009 42 1 1.9030 -10.8380 4.1581 43 1 0.1597 -11.1150 3.8343 44 1 0.5775 -11.8088 1.5665 45 1 1.9844 -12.5120 2.4243 46 1 2.8274 -3.7460 0.6242 47 1 2.1760 -4.0409 -1.0178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083175595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:32 Heat of formation + Delta-G solvation = -167.315570 kcal Electronic energy + Delta-G solvation = -31975.487213 eV Core-core repulsion = 27407.892945 eV Total energy + Delta-G solvation = -4567.594268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.94360 -48.00961 -41.87992 -40.07121 -38.15902 -37.54538 -35.98874 -34.28771 -32.85201 -31.44799 -29.39516 -29.24367 -28.75158 -27.19379 -25.98770 -24.47695 -22.53429 -22.25393 -22.05304 -21.10385 -19.82343 -19.10076 -18.94015 -18.38423 -17.83898 -17.49776 -16.98815 -16.88798 -16.65262 -16.48050 -16.11049 -15.59116 -15.46789 -15.33851 -15.16068 -14.98718 -14.74709 -14.54620 -14.37497 -14.23609 -14.09811 -13.67607 -13.52991 -13.28915 -12.99994 -12.85835 -12.81806 -12.72916 -12.57559 -12.44528 -12.17319 -12.11041 -12.03415 -11.90685 -11.85241 -11.65293 -11.58360 -11.43133 -11.08126 -10.80739 -10.79470 -9.61303 -8.96393 -7.89501 -5.26667 1.44837 1.46419 1.51224 1.56915 1.71742 2.47121 2.71521 2.81296 2.94528 3.17831 3.28870 3.30134 3.46339 3.54644 3.64426 3.85795 3.90320 3.99259 4.03144 4.08598 4.20122 4.22123 4.28753 4.30089 4.36727 4.42883 4.46046 4.55236 4.62391 4.68817 4.74967 4.79623 4.86227 4.92827 4.95215 5.05367 5.09720 5.22733 5.31020 5.35437 5.37990 5.43413 5.64614 6.13177 6.29649 6.38809 7.04375 7.06480 7.69053 8.32282 9.21057 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.002632 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.727699 B =10635.709029 C =11052.571682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.198 3.802 11 C 0.077 3.923 12 H 0.089 0.911 13 O -0.392 6.392 14 C 0.040 3.960 15 C 0.068 3.932 16 N -0.599 5.599 17 C 0.513 3.487 18 O -0.573 6.573 19 C -0.123 4.123 20 C -0.117 4.117 21 H 0.085 0.915 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.153 4.153 25 C 0.280 3.720 26 F -0.200 7.200 27 F -0.211 7.211 28 C 0.116 3.884 29 H 0.091 0.909 30 C 0.138 3.862 31 H 0.250 0.750 32 H 0.024 0.976 33 H 0.027 0.973 34 H 0.132 0.868 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.032 0.968 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -27.775 0.630 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.811 3.189 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.347 5.347 10 C 0.072 3.928 11 C 0.018 3.982 12 H 0.107 0.893 13 O -0.311 6.311 14 C -0.037 4.037 15 C -0.054 4.054 16 N -0.332 5.332 17 C 0.303 3.697 18 O -0.452 6.452 19 C -0.162 4.162 20 C -0.136 4.136 21 H 0.104 0.896 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.191 4.191 25 C 0.243 3.757 26 F -0.181 7.181 27 F -0.192 7.192 28 C 0.010 3.990 29 H 0.109 0.891 30 C 0.011 3.989 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.151 0.849 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.136 0.864 45 H 0.120 0.880 46 H 0.050 0.950 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.544 -27.285 1.035 27.348 hybrid contribution 0.799 1.415 0.040 1.626 sum -0.745 -25.870 1.075 25.903 Atomic orbital electron populations 1.70150 1.06249 1.25548 1.57793 1.25688 0.96724 1.01066 1.02033 0.84945 0.78023 0.79037 0.76891 1.19189 1.21584 1.21591 1.19451 0.90951 0.83384 1.43787 0.90145 1.44380 1.02292 1.00852 1.87195 1.20862 0.84192 0.88837 0.98910 1.23547 0.95546 0.95524 0.83628 0.89312 1.87896 1.93542 1.24262 1.25400 1.23266 0.95571 0.80820 1.04006 1.22863 0.98511 1.03424 0.80575 1.47708 1.66672 1.07092 1.11679 1.21207 0.75404 0.88381 0.84690 1.90692 1.51779 1.82351 1.20377 1.21761 1.06171 0.89145 0.99150 1.22515 1.02200 0.91762 0.97173 0.89610 1.22371 0.97161 0.97819 0.97490 1.22517 1.03714 0.93167 0.96225 1.23391 0.99892 0.98321 0.97474 1.22110 0.78838 0.97293 0.77411 1.92978 1.94147 1.96958 1.34005 1.92998 1.38745 1.94284 1.93216 1.21833 0.95939 0.81419 0.99789 0.89110 1.21658 0.94831 0.85020 0.97368 0.94063 0.95786 0.95476 0.85007 0.91331 0.90686 0.84412 0.86884 0.84895 0.91479 0.89913 0.90816 0.87921 0.86445 0.88013 0.94974 0.95448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 10.29 21.65 0.22 -57.64 16 2 C -0.06 -3.60 5.48 84.86 0.47 -3.14 16 3 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.25 -14.41 10.28 84.04 0.86 -13.54 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 9 N -0.62 -33.57 3.37 -694.41 -2.34 -35.91 16 10 C 0.20 10.17 5.00 87.13 0.44 10.60 16 11 C 0.08 2.97 4.00 31.61 0.13 3.10 16 12 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 13 O -0.39 -13.87 9.98 -148.98 -1.49 -15.35 16 14 C 0.04 0.86 7.02 72.17 0.51 1.37 16 15 C 0.07 1.35 6.27 86.47 0.54 1.89 16 16 N -0.60 -16.62 2.76 -793.37 -2.19 -18.81 16 17 C 0.51 13.54 7.46 87.65 0.65 14.19 16 18 O -0.57 -19.75 14.23 -3.02 -0.04 -19.79 16 19 C -0.12 -2.06 2.53 29.85 0.08 -1.98 16 20 C -0.12 -2.08 2.39 -10.07 -0.02 -2.10 16 21 H 0.09 1.95 7.80 -2.39 -0.02 1.93 16 22 C -0.11 -1.73 5.43 31.67 0.17 -1.56 16 23 C -0.12 -1.22 6.91 31.89 0.22 -1.00 16 24 C -0.15 -1.48 6.40 31.67 0.20 -1.28 16 25 C 0.28 4.38 2.53 31.32 0.08 4.46 16 26 F -0.20 -3.20 15.45 44.97 0.69 -2.50 16 27 F -0.21 -4.32 17.04 44.97 0.77 -3.56 16 28 C 0.12 4.36 3.19 45.94 0.15 4.51 16 29 H 0.09 3.78 7.08 -2.39 -0.02 3.76 16 30 C 0.14 6.14 6.80 86.56 0.59 6.73 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.02 1.40 7.31 -2.39 -0.02 1.39 16 33 H 0.03 1.54 7.41 -2.38 -0.02 1.52 16 34 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.65 7.60 -2.39 -0.02 1.63 16 37 H 0.14 1.46 5.95 -2.38 -0.01 1.45 16 38 H 0.11 1.68 7.61 -2.38 -0.02 1.66 16 39 H 0.13 1.41 7.42 -2.39 -0.02 1.39 16 40 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 41 H 0.08 1.12 7.76 -2.39 -0.02 1.10 16 42 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.12 0.72 8.12 -2.38 -0.02 0.71 16 45 H 0.10 0.83 8.11 -2.39 -0.02 0.81 16 46 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.03 1.21 7.34 -2.39 -0.02 1.19 16 Total: -1.00 -75.77 367.84 3.69 -72.08 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.98 Total: 10.46 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 5.05 Total: 22.26 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.31 Total: -112.36 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.53 Total: -35.15 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 1.46 Total: -6.06 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.77 3.69 -72.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083175595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.233 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds