Wall clock time and date at job start Wed Apr 1 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00441 * 2 1 4 4 H 1.48502 * 109.46851 * 269.99903 * 3 2 1 5 5 H 1.48499 * 109.47046 * 29.99298 * 3 2 1 6 6 H 1.48501 * 109.47443 * 149.99928 * 3 2 1 7 7 C 1.38816 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.46878 * 125.36516 * 359.97438 * 9 7 2 11 11 C 1.54198 * 106.39467 * 197.85848 * 10 9 7 12 12 H 1.09001 * 109.63984 * 89.90577 * 11 10 9 13 13 O 1.40784 * 110.22809 * 210.33587 * 11 10 9 14 14 C 1.41320 * 118.40087 * 67.70566 * 13 11 10 15 15 C 1.51774 * 111.63734 * 56.76386 * 14 13 11 16 16 N 1.44960 * 111.99972 * 319.67544 * 15 14 13 17 17 C 1.34772 * 117.32463 * 203.54568 * 16 15 14 18 18 O 1.21281 * 120.00357 * 176.30318 * 17 16 15 19 19 C 1.50701 * 120.00066 * 356.29452 * 17 16 15 20 20 C 1.52997 * 109.47105 * 180.02562 * 19 17 16 21 21 H 1.08995 * 110.05606 * 306.41813 * 20 19 17 22 22 C 1.54274 * 110.03060 * 185.00177 * 20 19 17 23 23 C 1.54886 * 104.19472 * 217.10653 * 22 20 19 24 24 C 1.54887 * 102.74978 * 37.94189 * 23 22 20 25 25 C 1.53868 * 110.03400 * 67.83617 * 20 19 17 26 26 F 1.39901 * 110.03152 * 238.56763 * 25 20 19 27 27 F 1.39900 * 110.03250 * 359.94860 * 25 20 19 28 28 C 1.44544 * 125.35142 * 23.25239 * 16 15 14 29 29 H 1.08996 * 109.49032 * 106.14371 * 28 16 15 30 30 C 1.46780 * 125.36507 * 179.97438 * 9 7 2 31 31 H 0.97009 * 120.00077 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.06873 * 317.09123 * 10 9 7 33 33 H 1.09000 * 110.06985 * 78.57063 * 10 9 7 34 34 H 1.09002 * 109.06314 * 177.47075 * 14 13 11 35 35 H 1.09001 * 109.06732 * 296.41013 * 14 13 11 36 36 H 1.09003 * 109.07522 * 198.92554 * 15 14 13 37 37 H 1.09002 * 108.80009 * 80.23304 * 15 14 13 38 38 H 1.09002 * 109.46839 * 60.00273 * 19 17 16 39 39 H 1.09006 * 109.46777 * 300.00563 * 19 17 16 40 40 H 1.08999 * 110.48247 * 335.78564 * 22 20 19 41 41 H 1.09000 * 110.48279 * 98.42594 * 22 20 19 42 42 H 1.08999 * 110.75914 * 156.26170 * 23 22 20 43 43 H 1.09007 * 110.75489 * 279.62660 * 23 22 20 44 44 H 1.09009 * 110.48691 * 203.38072 * 24 23 22 45 45 H 1.08999 * 110.59907 * 80.79333 * 24 23 22 46 46 H 1.09002 * 109.82753 * 59.34094 * 30 9 7 47 47 H 1.09006 * 109.90380 * 298.41248 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1370 -2.5254 0.0005 11 6 -0.4387 -3.9679 0.4542 12 1 -0.5381 -3.9975 1.5392 13 8 -1.6324 -4.4243 -0.1363 14 6 -1.6535 -4.6347 -1.5336 15 6 -0.5765 -5.6116 -1.9687 16 7 0.6692 -5.3982 -1.2588 17 6 1.8006 -5.8281 -1.8517 18 8 2.8759 -5.6149 -1.3328 19 6 1.7296 -6.5738 -3.1593 20 6 3.1431 -6.9459 -3.6116 21 1 3.7739 -6.0573 -3.6357 22 6 3.0962 -7.5988 -5.0086 23 6 4.1838 -8.7000 -4.9498 24 6 4.0405 -9.2453 -3.5072 25 6 3.7435 -7.9927 -2.6571 26 9 4.9271 -7.5043 -2.0934 27 9 2.8255 -8.3038 -1.6483 28 6 0.7980 -4.7568 0.0301 29 1 1.0092 -5.5082 0.7908 30 6 1.9372 -3.7224 0.0005 31 1 -0.4851 0.8401 -0.0004 32 1 -0.5794 -1.8137 0.6976 33 1 -0.5283 -2.3584 -1.0030 34 1 -2.6293 -5.0271 -1.8199 35 1 -1.4914 -3.6829 -2.0396 36 1 -0.4003 -5.4945 -3.0380 37 1 -0.9247 -6.6266 -1.7771 38 1 1.2612 -5.9412 -3.9134 39 1 1.1396 -7.4810 -3.0286 40 1 2.1162 -8.0397 -5.1908 41 1 3.3357 -6.8668 -5.7799 42 1 3.9809 -9.4828 -5.6806 43 1 5.1747 -8.2729 -5.1047 44 1 4.9692 -9.7150 -3.1829 45 1 3.2141 -9.9533 -3.4452 46 1 2.5666 -3.8405 0.8826 47 1 2.5351 -3.8564 -0.9009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083175596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:37 Heat of formation + Delta-G solvation = -132.804000 kcal Electronic energy + Delta-G solvation = -32990.352981 eV Core-core repulsion = 28424.255247 eV Total energy + Delta-G solvation = -4566.097734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.78767 -46.83504 -40.77855 -38.66334 -37.46295 -35.88554 -34.78613 -32.61850 -31.73231 -30.00094 -28.26889 -27.92315 -27.49663 -25.81076 -24.44232 -23.24736 -21.57697 -21.26831 -20.28627 -19.71406 -18.41533 -17.74973 -17.41549 -17.06469 -16.61907 -16.50144 -16.15491 -15.52269 -15.20294 -14.96807 -14.64695 -14.56651 -14.31346 -14.10122 -13.86470 -13.72210 -13.38738 -13.20967 -13.05702 -12.76479 -12.72536 -12.28780 -12.12522 -11.98953 -11.86048 -11.77210 -11.56837 -11.43473 -11.34496 -11.07169 -11.02973 -10.85015 -10.68778 -10.57035 -10.40232 -10.32411 -10.05992 -9.72339 -9.30597 -8.91206 -8.56876 -8.18413 -6.76039 -5.64672 -3.02537 2.85530 3.07923 3.42614 3.47644 3.50204 3.66206 3.78961 4.01715 4.10548 4.16211 4.50739 4.56274 4.68067 4.78139 4.87332 4.92141 5.06731 5.07240 5.12443 5.13411 5.22299 5.33560 5.38150 5.42071 5.45900 5.47519 5.55884 5.59988 5.64997 5.72043 5.77331 5.79604 5.88464 5.95280 5.98092 6.15671 6.29001 6.62196 6.89359 7.21692 7.39490 7.52632 7.64844 7.76205 7.91182 8.32726 8.44808 9.25733 9.86238 10.49253 11.42203 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003609 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.468683 B = 7756.302746 C = 8788.723881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.141 3.859 11 C 0.067 3.933 12 H 0.112 0.888 13 O -0.370 6.370 14 C 0.058 3.942 15 C 0.078 3.922 16 N -0.588 5.588 17 C 0.506 3.494 18 O -0.516 6.516 19 C -0.134 4.134 20 C -0.119 4.119 21 H 0.110 0.890 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.165 4.165 25 C 0.294 3.706 26 F -0.190 7.190 27 F -0.197 7.197 28 C 0.113 3.887 29 H 0.068 0.932 30 C 0.125 3.875 31 H 0.251 0.749 32 H 0.098 0.902 33 H 0.021 0.979 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.031 0.969 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -20.126 -11.452 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.016 3.984 11 C 0.008 3.992 12 H 0.130 0.870 13 O -0.287 6.287 14 C -0.020 4.020 15 C -0.045 4.045 16 N -0.322 5.322 17 C 0.294 3.706 18 O -0.392 6.392 19 C -0.174 4.174 20 C -0.138 4.138 21 H 0.128 0.872 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.203 4.203 25 C 0.258 3.742 26 F -0.171 7.171 27 F -0.178 7.178 28 C 0.009 3.991 29 H 0.086 0.914 30 C -0.001 4.001 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.038 0.962 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.049 0.951 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.614 -19.804 -10.968 22.647 hybrid contribution 0.585 0.943 -0.012 1.110 sum 1.199 -18.862 -10.980 21.858 Atomic orbital electron populations 1.69868 1.04836 1.24802 1.57862 1.24782 0.95742 0.97654 1.02511 0.86072 0.78611 0.83343 0.77514 1.21730 1.21661 1.20637 1.19092 0.90567 0.82243 1.42813 0.90366 1.44286 1.01307 1.00290 1.87292 1.22037 0.85385 0.90699 1.00327 1.23075 0.82088 0.96174 0.97838 0.86994 1.86848 1.34730 1.86425 1.20710 1.22182 0.98038 0.98281 0.83474 1.21603 0.85870 1.00239 0.96823 1.46639 1.06544 1.58783 1.20279 1.20475 0.84066 0.79465 0.86621 1.90719 1.28191 1.55162 1.65156 1.21766 0.97484 1.01794 0.96310 1.22626 0.97399 0.99312 0.94502 0.87206 1.22439 0.99873 0.98068 0.95216 1.22462 0.99902 0.98413 0.95180 1.23398 1.04694 0.96189 0.95996 1.21585 0.75649 0.93914 0.83073 1.93035 1.47763 1.89333 1.86960 1.92982 1.66920 1.93705 1.64184 1.21556 0.98581 0.95299 0.83662 0.91370 1.21792 0.93340 0.83932 1.00991 0.93793 0.88421 0.96155 0.87928 0.92344 0.90180 0.91792 0.88009 0.88205 0.90350 0.89972 0.90008 0.90387 0.89111 0.88609 0.95080 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.43 10.18 55.49 0.56 -26.87 16 2 C -0.01 -0.34 5.48 -17.43 -0.10 -0.43 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.37 10.25 -15.05 -0.15 -6.52 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.60 -16.23 3.39 -171.41 -0.58 -16.81 16 10 C 0.14 3.51 5.26 -3.21 -0.02 3.50 16 11 C 0.07 1.36 3.91 -26.26 -0.10 1.25 16 12 H 0.11 2.16 8.14 -51.93 -0.42 1.74 16 13 O -0.37 -6.67 10.25 -34.35 -0.35 -7.02 16 14 C 0.06 0.83 6.73 36.54 0.25 1.07 16 15 C 0.08 1.00 5.85 -5.49 -0.03 0.97 16 16 N -0.59 -9.89 3.09 -169.12 -0.52 -10.41 16 17 C 0.51 8.40 5.94 -10.99 -0.07 8.33 16 18 O -0.52 -10.49 11.59 5.56 0.06 -10.42 16 19 C -0.13 -1.50 3.21 -27.88 -0.09 -1.59 16 20 C -0.12 -1.30 2.40 -89.50 -0.21 -1.52 16 21 H 0.11 1.43 7.80 -51.93 -0.41 1.02 16 22 C -0.12 -0.81 6.36 -25.07 -0.16 -0.97 16 23 C -0.12 -0.77 6.91 -24.74 -0.17 -0.94 16 24 C -0.16 -1.35 6.40 -25.07 -0.16 -1.51 16 25 C 0.29 3.67 1.80 -25.62 -0.05 3.62 16 26 F -0.19 -3.00 16.76 2.25 0.04 -2.96 16 27 F -0.20 -2.89 14.09 2.25 0.03 -2.86 16 28 C 0.11 2.24 3.34 -68.66 -0.23 2.01 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 C 0.13 2.95 6.06 -3.42 -0.02 2.93 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.10 2.73 6.25 -51.93 -0.32 2.41 16 33 H 0.02 0.55 6.48 -51.93 -0.34 0.21 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.95 6.73 -51.93 -0.35 0.60 16 36 H 0.08 0.81 6.33 -51.93 -0.33 0.48 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.93 7.11 -51.93 -0.37 0.56 16 39 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16 40 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.71 8.11 -51.92 -0.42 0.28 16 45 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.56 5.18 -51.93 -0.27 1.29 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -35.09 358.96 -8.64 -43.73 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.95 Total: 0.36 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.31 Total: 10.20 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.54 Total: -54.09 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.29 Total: -17.44 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.07 Total: -5.82 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.09 -8.64 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083175596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.072 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds