Wall clock time and date at job start Wed Apr 1 2020 02:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99585 * 3 2 1 5 5 H 1.48496 * 109.46936 * 29.99522 * 3 2 1 6 6 H 1.48508 * 109.46826 * 149.99661 * 3 2 1 7 7 C 1.38801 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99830 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99770 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47061 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99516 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00032 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.60493 * 0.02562 * 13 11 10 15 15 C 1.53196 * 108.77131 * 233.53550 * 14 13 11 16 16 C 1.53039 * 109.33748 * 305.41286 * 15 14 13 17 17 C 1.53045 * 109.53694 * 61.35198 * 16 15 14 18 18 H 1.08993 * 109.49902 * 58.61908 * 17 16 15 19 19 C 1.53003 * 109.49562 * 178.68194 * 17 16 15 20 20 H 1.09000 * 110.27332 * 59.29676 * 19 17 16 21 21 C 1.54596 * 110.30825 * 297.20890 * 19 17 16 22 22 C 1.55105 * 102.84125 * 219.18465 * 21 19 17 23 23 N 1.48529 * 103.28415 * 37.30748 * 22 21 19 24 24 C 1.46900 * 111.00129 * 200.32753 * 23 22 21 25 25 C 1.53000 * 109.47196 * 287.40005 * 24 23 22 26 26 F 1.39903 * 109.47147 * 179.97438 * 25 24 23 27 27 C 1.47902 * 105.82277 * 320.84558 * 23 22 21 28 28 C 1.46928 * 120.62770 * 180.02562 * 13 11 10 29 29 H 0.97003 * 119.99881 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47361 * 60.00029 * 10 9 7 31 31 H 1.08998 * 109.47032 * 299.99389 * 10 9 7 32 32 H 1.08996 * 109.56502 * 113.76244 * 14 13 11 33 33 H 1.09001 * 109.61713 * 353.33665 * 14 13 11 34 34 H 1.09002 * 109.49815 * 185.44599 * 15 14 13 35 35 H 1.09000 * 109.49595 * 65.37996 * 15 14 13 36 36 H 1.09001 * 109.45915 * 181.36781 * 16 15 14 37 37 H 1.08995 * 109.45917 * 301.32981 * 16 15 14 38 38 H 1.08996 * 110.72358 * 337.48116 * 21 19 17 39 39 H 1.08992 * 110.72226 * 100.77026 * 21 19 17 40 40 H 1.08999 * 110.59555 * 278.87503 * 22 21 19 41 41 H 1.09003 * 110.68167 * 155.77645 * 22 21 19 42 42 H 1.09002 * 109.46699 * 47.39843 * 24 23 22 43 43 H 1.08993 * 109.47368 * 167.39498 * 24 23 22 44 44 H 1.09002 * 109.47163 * 299.99553 * 25 24 23 45 45 H 1.08993 * 109.47376 * 59.99497 * 25 24 23 46 46 H 1.09006 * 109.91616 * 265.97817 * 27 23 22 47 47 H 1.08992 * 110.08438 * 144.77834 * 27 23 22 48 48 H 1.08997 * 109.58597 * 6.64243 * 28 13 11 49 49 H 1.09004 * 109.58075 * 246.21993 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5479 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.2958 -6.1167 0.0003 15 6 4.9153 -6.8924 -1.1666 16 6 4.5082 -8.3644 -1.0695 17 6 2.9853 -8.4817 -1.1660 18 1 2.6463 -8.0524 -2.1088 19 6 2.5815 -9.9561 -1.1019 20 1 2.9245 -10.4013 -0.1680 21 6 3.1653 -10.7252 -2.3092 22 6 2.0139 -11.6915 -2.6918 23 7 0.7938 -10.8761 -2.4629 24 6 -0.3895 -11.7321 -2.3044 25 6 -0.7738 -12.3271 -3.6606 26 9 -1.9003 -13.1429 -3.5096 27 6 1.0537 -10.0980 -1.2323 28 6 2.3439 -7.7247 0.0008 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7314 0.8905 31 1 3.1243 -3.7314 -0.8895 32 1 4.7205 -6.4695 0.9400 33 1 4.5001 -5.0527 -0.1188 34 1 6.0014 -6.8116 -1.1213 35 1 4.5586 -6.4776 -2.1093 36 1 4.9677 -8.9228 -1.8851 37 1 4.8441 -8.7720 -0.1161 38 1 3.3855 -10.0437 -3.1308 39 1 4.0566 -11.2809 -2.0181 40 1 2.0179 -12.5681 -2.0440 41 1 2.0896 -11.9851 -3.7388 42 1 -0.1643 -12.5373 -1.6051 43 1 -1.2187 -11.1383 -1.9200 44 1 -0.9990 -11.5220 -4.3600 45 1 0.0554 -12.9209 -4.0450 46 1 0.6548 -10.6274 -0.3670 47 1 0.5944 -9.1125 -1.3085 48 1 1.2604 -7.7211 -0.1176 49 1 2.6093 -8.2093 0.9405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275175147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:24 Heat of formation + Delta-G solvation = -94.966760 kcal Electronic energy + Delta-G solvation = -28025.310234 eV Core-core repulsion = 24027.066422 eV Total energy + Delta-G solvation = -3998.243812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.93679 -40.41724 -39.21603 -37.18178 -34.44781 -32.43090 -32.30158 -31.49275 -29.35313 -29.24882 -27.37884 -25.57623 -25.06125 -23.69330 -22.90615 -21.41286 -21.05413 -20.13039 -19.00675 -17.68210 -16.89774 -16.76230 -16.56714 -16.25036 -15.66334 -15.35149 -15.11027 -14.80085 -14.78672 -14.66962 -14.33041 -14.19077 -13.92037 -13.73881 -13.34312 -13.20266 -12.94841 -12.71219 -12.58728 -12.52401 -12.17917 -11.88649 -11.75946 -11.52330 -11.45535 -11.26982 -11.13277 -11.06209 -11.03167 -11.01923 -10.86305 -10.75899 -10.63230 -10.43509 -9.79559 -9.32638 -9.06313 -8.87226 -8.47986 -8.21528 -6.49423 -6.21140 -3.91621 2.94413 3.07350 3.22391 3.26210 3.30418 3.42553 3.60639 4.08607 4.20473 4.24186 4.32814 4.40407 4.47150 4.67988 4.69554 4.74294 4.83818 4.87154 4.95251 5.03151 5.06831 5.12469 5.13948 5.20027 5.24184 5.29255 5.31958 5.38328 5.44567 5.52276 5.54726 5.57730 5.60724 5.68214 5.69390 5.75142 5.81232 5.84160 5.90131 5.96833 6.06834 6.12533 6.20957 6.47161 6.56618 6.67084 7.58133 7.60317 8.35510 8.58399 9.24056 10.86282 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.002161 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.438121 B =12954.823272 C =14308.449254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.518 6.518 13 N -0.619 5.619 14 C 0.107 3.893 15 C -0.136 4.136 16 C -0.112 4.112 17 C -0.092 4.092 18 H 0.081 0.919 19 C -0.089 4.089 20 H 0.077 0.923 21 C -0.116 4.116 22 C 0.028 3.972 23 N -0.514 5.514 24 C 0.014 3.986 25 C 0.066 3.934 26 F -0.218 7.218 27 C 0.037 3.963 28 C 0.117 3.883 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.244 -25.750 -4.137 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.300 4.300 11 C 0.323 3.677 12 O -0.392 6.392 13 N -0.355 5.355 14 C -0.016 4.016 15 C -0.174 4.174 16 C -0.150 4.150 17 C -0.111 4.111 18 H 0.100 0.900 19 C -0.109 4.109 20 H 0.096 0.904 21 C -0.154 4.154 22 C -0.099 4.099 23 N -0.238 5.238 24 C -0.115 4.115 25 C 0.011 3.989 26 F -0.200 7.200 27 C -0.090 4.090 28 C -0.006 4.006 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.137 -25.594 -4.553 27.239 hybrid contribution 2.140 0.671 0.741 2.362 sum 10.277 -24.923 -3.812 27.226 Atomic orbital electron populations 1.70019 1.05948 1.27437 1.46856 1.24993 0.95027 0.99018 0.94568 0.86174 0.79408 0.81602 0.78348 1.20267 1.20756 1.19703 1.22856 0.94868 0.91647 1.58924 0.90969 1.85409 1.05042 0.96339 1.96689 1.23549 1.06417 0.95456 1.04626 1.20332 0.86215 0.86213 0.74952 1.90688 1.15189 1.85240 1.48068 1.48075 1.06357 1.05664 1.75430 1.21720 0.80103 1.01532 0.98269 1.21928 1.00502 0.95652 0.99340 1.21564 0.95042 0.96357 1.02012 1.21588 0.95723 0.93810 0.99983 0.90038 1.21992 0.94419 0.95543 0.98914 0.90448 1.22578 0.97014 0.97737 0.98035 1.23383 0.89940 0.95191 1.01409 1.64628 1.02222 1.22087 1.34848 1.22819 0.95235 0.96715 0.96728 1.21871 0.85176 0.93473 0.98384 1.92766 1.54885 1.75227 1.97084 1.23039 0.95914 0.99586 0.90495 1.21590 1.00640 0.81229 0.97168 0.92189 0.89351 0.89307 0.91654 0.89259 0.90767 0.91248 0.91609 0.91927 0.90247 0.90915 0.93621 0.89961 0.93486 0.89392 0.89670 0.91002 0.93438 0.89069 0.88835 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.05 4.50 36.01 0.16 -2.89 16 11 C 0.53 10.20 7.72 -10.98 -0.08 10.11 16 12 O -0.52 -11.84 15.28 5.55 0.08 -11.76 16 13 N -0.62 -8.68 2.97 -172.78 -0.51 -9.19 16 14 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 15 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 16 C -0.11 -0.84 4.99 -26.69 -0.13 -0.98 16 17 C -0.09 -0.82 1.63 -90.51 -0.15 -0.97 16 18 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 19 C -0.09 -0.66 2.56 -89.26 -0.23 -0.89 16 20 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 21 C -0.12 -0.73 5.59 -24.78 -0.14 -0.87 16 22 C 0.03 0.19 5.91 -1.81 -0.01 0.18 16 23 N -0.51 -4.31 5.25 -230.35 -1.21 -5.52 16 24 C 0.01 0.11 5.16 -3.82 -0.02 0.09 16 25 C 0.07 0.49 7.64 37.16 0.28 0.77 16 26 F -0.22 -2.15 17.36 2.25 0.04 -2.11 16 27 C 0.04 0.32 5.89 -2.76 -0.02 0.31 16 28 C 0.12 1.37 5.38 -3.73 -0.02 1.35 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 31 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.43 7.21 -51.93 -0.37 0.05 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.56 7.73 -51.93 -0.40 0.15 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.28 7.81 -51.93 -0.41 -0.13 16 41 H 0.08 0.48 7.80 -51.93 -0.41 0.07 16 42 H 0.05 0.35 7.83 -51.93 -0.41 -0.06 16 43 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.42 7.37 -51.93 -0.38 0.04 16 46 H 0.05 0.39 7.78 -51.93 -0.40 -0.01 16 47 H 0.09 0.98 6.40 -51.93 -0.33 0.64 16 48 H 0.09 1.29 5.60 -51.93 -0.29 1.00 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -34.03 394.48 -10.79 -44.81 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.29 Total: -2.24 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.34 Total: -6.93 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.99 Total: -40.20 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.03 -10.79 -44.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275175147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.155 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds