Wall clock time and date at job start Wed Apr 1 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99585 * 3 2 1 5 5 H 1.48496 * 109.46936 * 29.99522 * 3 2 1 6 6 H 1.48508 * 109.46826 * 149.99661 * 3 2 1 7 7 C 1.38801 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99830 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99770 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47061 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99516 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00032 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.60493 * 0.02562 * 13 11 10 15 15 C 1.53196 * 108.77131 * 233.53550 * 14 13 11 16 16 C 1.53039 * 109.33748 * 305.41286 * 15 14 13 17 17 C 1.53045 * 109.53694 * 61.35198 * 16 15 14 18 18 H 1.08993 * 109.49902 * 58.61908 * 17 16 15 19 19 C 1.53003 * 109.49562 * 178.68194 * 17 16 15 20 20 H 1.09000 * 110.27332 * 59.29676 * 19 17 16 21 21 C 1.54596 * 110.30825 * 297.20890 * 19 17 16 22 22 C 1.55105 * 102.84125 * 219.18465 * 21 19 17 23 23 N 1.48529 * 103.28415 * 37.30748 * 22 21 19 24 24 C 1.46900 * 111.00129 * 200.32753 * 23 22 21 25 25 C 1.53000 * 109.47196 * 287.40005 * 24 23 22 26 26 F 1.39903 * 109.47147 * 179.97438 * 25 24 23 27 27 C 1.47902 * 105.82277 * 320.84558 * 23 22 21 28 28 C 1.46928 * 120.62770 * 180.02562 * 13 11 10 29 29 H 0.97003 * 119.99881 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47361 * 60.00029 * 10 9 7 31 31 H 1.08998 * 109.47032 * 299.99389 * 10 9 7 32 32 H 1.08996 * 109.56502 * 113.76244 * 14 13 11 33 33 H 1.09001 * 109.61713 * 353.33665 * 14 13 11 34 34 H 1.09002 * 109.49815 * 185.44599 * 15 14 13 35 35 H 1.09000 * 109.49595 * 65.37996 * 15 14 13 36 36 H 1.09001 * 109.45915 * 181.36781 * 16 15 14 37 37 H 1.08995 * 109.45917 * 301.32981 * 16 15 14 38 38 H 1.08996 * 110.72358 * 337.48116 * 21 19 17 39 39 H 1.08992 * 110.72226 * 100.77026 * 21 19 17 40 40 H 1.08999 * 110.59555 * 278.87503 * 22 21 19 41 41 H 1.09003 * 110.68167 * 155.77645 * 22 21 19 42 42 H 1.09002 * 109.46699 * 47.39843 * 24 23 22 43 43 H 1.08993 * 109.47368 * 167.39498 * 24 23 22 44 44 H 1.09002 * 109.47163 * 299.99553 * 25 24 23 45 45 H 1.08993 * 109.47376 * 59.99497 * 25 24 23 46 46 H 1.09006 * 109.91616 * 265.97817 * 27 23 22 47 47 H 1.08992 * 110.08438 * 144.77834 * 27 23 22 48 48 H 1.08997 * 109.58597 * 6.64243 * 28 13 11 49 49 H 1.09004 * 109.58075 * 246.21993 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5479 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.2958 -6.1167 0.0003 15 6 4.9153 -6.8924 -1.1666 16 6 4.5082 -8.3644 -1.0695 17 6 2.9853 -8.4817 -1.1660 18 1 2.6463 -8.0524 -2.1088 19 6 2.5815 -9.9561 -1.1019 20 1 2.9245 -10.4013 -0.1680 21 6 3.1653 -10.7252 -2.3092 22 6 2.0139 -11.6915 -2.6918 23 7 0.7938 -10.8761 -2.4629 24 6 -0.3895 -11.7321 -2.3044 25 6 -0.7738 -12.3271 -3.6606 26 9 -1.9003 -13.1429 -3.5096 27 6 1.0537 -10.0980 -1.2323 28 6 2.3439 -7.7247 0.0008 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7314 0.8905 31 1 3.1243 -3.7314 -0.8895 32 1 4.7205 -6.4695 0.9400 33 1 4.5001 -5.0527 -0.1188 34 1 6.0014 -6.8116 -1.1213 35 1 4.5586 -6.4776 -2.1093 36 1 4.9677 -8.9228 -1.8851 37 1 4.8441 -8.7720 -0.1161 38 1 3.3855 -10.0437 -3.1308 39 1 4.0566 -11.2809 -2.0181 40 1 2.0179 -12.5681 -2.0440 41 1 2.0896 -11.9851 -3.7388 42 1 -0.1643 -12.5373 -1.6051 43 1 -1.2187 -11.1383 -1.9200 44 1 -0.9990 -11.5220 -4.3600 45 1 0.0554 -12.9209 -4.0450 46 1 0.6548 -10.6274 -0.3670 47 1 0.5944 -9.1125 -1.3085 48 1 1.2604 -7.7211 -0.1176 49 1 2.6093 -8.2093 0.9405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275175147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:23 Heat of formation + Delta-G solvation = -116.800752 kcal Electronic energy + Delta-G solvation = -28026.257027 eV Core-core repulsion = 24027.066422 eV Total energy + Delta-G solvation = -3999.190605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.64806 -41.39843 -40.16868 -38.26237 -35.32915 -34.59363 -33.20130 -32.32839 -30.69690 -29.88769 -28.16609 -27.67306 -26.12924 -24.43248 -23.59573 -22.25109 -21.69697 -20.85075 -20.34937 -19.45107 -18.20868 -17.49105 -17.21193 -17.04598 -16.90391 -16.84595 -16.55637 -15.99997 -15.65388 -15.59229 -15.41143 -15.05131 -14.98339 -14.60866 -14.50557 -14.31303 -14.20753 -13.85008 -13.49550 -13.32894 -13.17551 -13.16431 -12.91942 -12.89297 -12.61856 -12.37954 -12.24286 -12.11912 -11.92505 -11.79217 -11.70812 -11.68636 -11.56781 -11.35971 -11.15271 -11.14812 -10.82037 -10.26997 -9.63381 -9.48835 -8.68717 -8.35157 -6.13956 1.25081 1.42288 1.45577 1.56082 1.57350 2.11600 2.26903 2.81297 2.98889 3.24803 3.45107 3.62134 3.67215 3.71538 3.81414 3.85379 4.00774 4.07706 4.09805 4.19240 4.24491 4.26711 4.35814 4.36923 4.40700 4.42969 4.52065 4.59449 4.60663 4.64470 4.72142 4.75793 4.86975 4.94314 4.96048 4.99229 5.02556 5.06354 5.17315 5.18368 5.32965 5.34946 5.40817 5.51268 5.60582 5.86254 5.97133 6.19058 6.30732 7.05748 7.14938 8.74192 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.002161 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.438121 B =12954.823272 C =14308.449254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.155 6.155 10 C -0.121 4.121 11 C 0.530 3.470 12 O -0.569 6.569 13 N -0.606 5.606 14 C 0.096 3.904 15 C -0.131 4.131 16 C -0.107 4.107 17 C -0.080 4.080 18 H 0.055 0.945 19 C -0.082 4.082 20 H 0.095 0.905 21 C -0.109 4.109 22 C 0.028 3.972 23 N -0.529 5.529 24 C 0.017 3.983 25 C 0.067 3.933 26 F -0.233 7.233 27 C 0.036 3.964 28 C 0.113 3.887 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.259 -27.143 -4.133 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.072 5.928 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.448 6.448 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.170 4.170 16 C -0.144 4.144 17 C -0.100 4.100 18 H 0.073 0.927 19 C -0.101 4.101 20 H 0.113 0.887 21 C -0.147 4.147 22 C -0.100 4.100 23 N -0.254 5.254 24 C -0.113 4.113 25 C 0.012 3.988 26 F -0.214 7.214 27 C -0.092 4.092 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.210 -27.034 -4.556 30.011 hybrid contribution 0.920 0.976 0.737 1.531 sum 13.131 -26.057 -3.819 29.428 Atomic orbital electron populations 1.70191 1.08031 1.28620 1.47997 1.26161 0.95987 1.03399 0.93721 0.84936 0.78223 0.75878 0.78833 1.19261 1.20308 1.18037 1.23186 0.95314 0.91840 1.58893 0.89864 1.85614 1.10754 0.99389 1.97019 1.23354 1.03275 0.94445 1.06177 1.20155 0.86038 0.86770 0.75269 1.90670 1.17337 1.85824 1.50971 1.48114 1.07496 1.05400 1.72960 1.22089 0.77699 1.02023 1.00734 1.21923 1.01904 0.95835 0.97291 1.21569 0.93138 0.95901 1.03788 1.21461 0.97057 0.94294 0.97175 0.92669 1.21961 0.93188 0.94479 1.00489 0.88671 1.22573 0.97659 0.97465 0.97015 1.23472 0.88917 0.95286 1.02284 1.64586 1.03223 1.22887 1.34657 1.22764 0.94773 0.96555 0.97163 1.21957 0.85179 0.93581 0.98085 1.92736 1.55880 1.75652 1.97140 1.22965 0.97113 0.98202 0.90889 1.21788 0.99355 0.80219 0.99573 0.91994 0.87520 0.87670 0.89055 0.89787 0.87951 0.92893 0.89718 0.90082 0.90945 0.88515 0.92621 0.88991 0.92847 0.90927 0.89758 0.88915 0.93227 0.92185 0.91817 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.54 -31.40 9.50 67.95 0.65 -30.76 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 10 C -0.12 -5.00 4.50 71.24 0.32 -4.68 16 11 C 0.53 20.75 7.72 87.66 0.68 21.43 16 12 O -0.57 -27.66 15.28 -3.05 -0.05 -27.71 16 13 N -0.61 -16.61 2.97 -818.94 -2.43 -19.05 16 14 C 0.10 1.80 6.34 86.36 0.55 2.35 16 15 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16 16 C -0.11 -1.20 4.99 30.62 0.15 -1.04 16 17 C -0.08 -1.33 1.63 -10.72 -0.02 -1.35 16 18 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 19 C -0.08 -1.04 2.56 -9.91 -0.03 -1.07 16 20 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 21 C -0.11 -1.05 5.59 31.86 0.18 -0.87 16 22 C 0.03 0.30 5.91 86.71 0.51 0.81 16 23 N -0.53 -8.62 5.25 -882.69 -4.63 -13.25 16 24 C 0.02 0.26 5.16 86.30 0.45 0.70 16 25 C 0.07 0.95 7.64 71.98 0.55 1.50 16 26 F -0.23 -4.54 17.36 44.97 0.78 -3.76 16 27 C 0.04 0.63 5.89 86.45 0.51 1.14 16 28 C 0.11 2.59 5.38 86.35 0.46 3.06 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.11 3.97 7.94 -2.40 -0.02 3.95 16 31 H 0.11 3.95 7.69 -2.40 -0.02 3.93 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.68 5.93 -2.39 -0.01 1.66 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.72 7.21 -2.39 -0.02 0.70 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.83 7.73 -2.39 -0.02 0.81 16 39 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.51 7.81 -2.39 -0.02 0.49 16 41 H 0.09 0.82 7.80 -2.39 -0.02 0.81 16 42 H 0.05 0.75 7.83 -2.39 -0.02 0.73 16 43 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 0.93 7.37 -2.39 -0.02 0.92 16 46 H 0.05 0.82 7.78 -2.38 -0.02 0.80 16 47 H 0.06 1.42 6.40 -2.39 -0.02 1.41 16 48 H 0.06 1.89 5.60 -2.39 -0.01 1.87 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -78.61 394.48 1.36 -77.26 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.93 Total: 16.31 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.61 Total: -9.25 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -6.78 Total: -88.67 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -78.61 1.36 -77.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275175147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.545 kcal (2) G-P(sol) polarization free energy of solvation -78.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds